Rh5DG492400

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0007301
Physical Location & Seq
Reverse (-)
77374221 .. 77375979
1759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG492400.1

Sequence Viewer

Length: 525 bp
ATGGTTCCTTTCTTTTATGGCCTGTGCTTGCAGCTTAATAATATTTTTGGGGATCTACTCGATTCCATTATTGTTGATGTTGCATCTGAGTGTCACCGAATAGCAAAGTTGGGACTTGATCGTAATTTTGAAGAAGAGGAAGAAGAAATGAGGCTTTCAGCCCAAGCACGGGTAAGGGTAGCTGATCCTAGTAATAGTAGTGAAGCAAATGGCAAGTACCTGGTTGACATATTTGGACAGACTCATCCTCCTGTTGCCAATGAAATATTTGAGTGCATGAATTGTGGTCGAACTATCATGGCCGGAAGATTTGCTCCTCATTTGGAGAAGTGTATGGGAAAGGGTAGAAAGGCTCGTCTGAAGGTGACAAGAAGTAGCACGGCTGCACAGACTCGACATACACGAGGCAACCCTGGTTCCACATACTCCAATTATTCAAATTCCAACAGCACAAGCCGGCTACCAAATGGAACATCAAGTGTTGGAGGTGAGGAGTACTCGAATGGTGCACTGGAAGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

174

Amino Acids

19.1

Weight (kDa)

6.1

Isoelectric Point (pI)

49.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 87 - 117 9.6e-17 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 60, 179
AcoI YGGCCR 1 cut(s) 300
AcsI RAATTY 1 cut(s) 439
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 2 cut(s) 218, 497
AfiI CCNNNNNNNGG 2 cut(s) 168, 169
AgsI TTSAA 2 cut(s) 131, 438
AjnI CCWGG 2 cut(s) 219, 412
AluBI AGCT 2 cut(s) 34, 182
AluI AGCT 2 cut(s) 34, 182
Alw21I GWGCWC 1 cut(s) 511
Alw44I GTGCAC 1 cut(s) 507
AlwI GGATC 2 cut(s) 60, 179
AoxI GGCC 2 cut(s) 19, 300
ApaLI GTGCAC 1 cut(s) 507
ApeKI GCWGC 2 cut(s) 31, 383
ApoI RAATTY 1 cut(s) 439
AsuHPI GGTGA 3 cut(s) 86, 376, 500
BaeGI GKGCMC 1 cut(s) 511
BauI CACGAG 1 cut(s) 402
Bbv12I GWGCWC 1 cut(s) 511
BbvI GCAGC 2 cut(s) 43, 370
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 221, 414
BfaI CTAG 1 cut(s) 189
BisI GCNGC 2 cut(s) 32, 384
BlsI GCNGC 2 cut(s) 33, 385
BmcAI AGTACT 1 cut(s) 497
Bme1390I CCNGG 2 cut(s) 221, 414
BmiI GGNNCC 2 cut(s) 6, 418
BmrFI CCNGG 2 cut(s) 221, 414
BmsI GCATC 1 cut(s) 92
BplI GAGNNNNNCTC 2 cut(s) 482, 514
BsaJI CCNNGG 1 cut(s) 412
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 169
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 516
BseBI CCWGG 2 cut(s) 221, 414
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 168, 169
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 1 cut(s) 516
BseRI GAGGAG 2 cut(s) 306, 506
BseSI GKGCMC 1 cut(s) 511
BseXI GCAGC 2 cut(s) 43, 370
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 21, 302
BsiHKAI GWGCWC 1 cut(s) 511
BsiSI CCGG 2 cut(s) 303, 457
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 168, 169
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 21, 302
Bsp1286I GDGCHC 1 cut(s) 511
Bsp143I GATC 3 cut(s) 52, 118, 184
BspANI GGCC 2 cut(s) 21, 302
BspCNI CTCAG 1 cut(s) 79
BspHI TCATGA 1 cut(s) 521
BspLI GGNNCC 2 cut(s) 6, 418
BspPI GGATC 2 cut(s) 60, 179
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 1 cut(s) 516
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 3 cut(s) 52, 118, 184
BssSI CACGAG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 402
Bst2UI CCWGG 2 cut(s) 221, 414
Bst6I CTCTTC 2 cut(s) 129, 510
BstC8I GCNNGC 2 cut(s) 29, 458
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 55, 121, 187
BstMBI GATC 3 cut(s) 52, 118, 184
BstNI CCWGG 2 cut(s) 221, 414
BstSCI CCNGG 2 cut(s) 219, 412
BstSLI GKGCMC 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 43, 370
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 21, 302
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 509
Cac8I GCNNGC 2 cut(s) 29, 458
CciI TCATGA 1 cut(s) 521
Cfr10I RCCGGY 1 cut(s) 456
CsiI ACCWGGT 1 cut(s) 219
Csp6I GTAC 2 cut(s) 217, 496
CviAII CATG 3 cut(s) 277, 298, 522
CviQI GTAC 2 cut(s) 217, 496
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 54, 120, 186
DpnII GATC 3 cut(s) 52, 118, 184
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 2 cut(s) 129, 510
EarI CTCTTC 2 cut(s) 129, 510
Eco57I CTGAAG 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 219, 412
FaeI CATG 3 cut(s) 280, 301, 525
FaiI YATR 8 cut(s) 18, 230, 278, 299, 335, 399, 424, 523
FaqI GGGAC 1 cut(s) 126
FatI CATG 3 cut(s) 276, 297, 521
Fnu4HI GCNGC 2 cut(s) 32, 384
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 2 cut(s) 32, 384
FspBI CTAG 1 cut(s) 189
GluI GCNGC 2 cut(s) 32, 384
HaeIII GGCC 2 cut(s) 21, 302
HapII CCGG 2 cut(s) 303, 457
Hin1II CATG 3 cut(s) 280, 301, 525
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 4 cut(s) 62, 241, 391, 518
HpaII CCGG 2 cut(s) 303, 457
HphI GGTGA 3 cut(s) 86, 376, 500
Hpy166II GTNNAC 2 cut(s) 226, 509
Hpy188I TCNGA 2 cut(s) 88, 360
Hpy188III TCNNGA 1 cut(s) 522
Hpy8I GTNNAC 2 cut(s) 226, 509
HpyAV CCTTC 1 cut(s) 355
HpyCH4V TGCA 5 cut(s) 31, 83, 276, 386, 509
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 3 cut(s) 280, 301, 525
KroI GCCGGC 1 cut(s) 456
KroNI GCCGGC 1 cut(s) 458
Kzo9I GATC 3 cut(s) 52, 118, 184
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 9 cut(s) 35, 206, 233, 264, 316, 399, 426, 470, 497
Lsp1109I GCAGC 2 cut(s) 43, 370
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 219
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 2 cut(s) 92, 364
MalI GATC 3 cut(s) 54, 120, 186
MboI GATC 3 cut(s) 52, 118, 184
MboII GAAGA 5 cut(s) 143, 146, 152, 155, 318
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 511
MluCI AATT 4 cut(s) 124, 280, 430, 439
MlyI GAGTC 2 cut(s) 235, 385
MmeI TCCRAC 2 cut(s) 463, 468
MnlI CCTC 7 cut(s) 130, 144, 258, 327, 398, 479, 484
MroNI GCCGGC 1 cut(s) 456
MseI TTAA 1 cut(s) 36
MslI CAYNNNNRTG 1 cut(s) 88
MspI CCGG 2 cut(s) 303, 457
MspR9I CCNGG 2 cut(s) 221, 414
MvaI CCWGG 2 cut(s) 221, 414
NaeI GCCGGC 1 cut(s) 458
NdeII GATC 3 cut(s) 52, 118, 184
NgoMIV GCCGGC 1 cut(s) 456
NlaIII CATG 3 cut(s) 280, 301, 525
NlaIV GGNNCC 2 cut(s) 6, 418
NmuCI GTSAC 2 cut(s) 92, 364
PagI TCATGA 1 cut(s) 521
PcsI WCGNNNNNNNCGW 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 458
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 2 cut(s) 33, 385
PleI GAGTC 2 cut(s) 235, 385
PpsI GAGTC 2 cut(s) 235, 385
Psp6I CCWGG 2 cut(s) 219, 412
PspGI CCWGG 2 cut(s) 219, 412
PspN4I GGNNCC 2 cut(s) 6, 418
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 2 cut(s) 218, 497
RsaNI GTAC 2 cut(s) 217, 496
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 2 cut(s) 32, 384
Sau3AI GATC 3 cut(s) 52, 118, 184
ScaI AGTACT 1 cut(s) 497
SchI GAGTC 2 cut(s) 235, 385
ScrFI CCNGG 2 cut(s) 221, 414
SduI GDGCHC 1 cut(s) 511
SetI ASST 5 cut(s) 36, 184, 222, 366, 490
SexAI ACCWGGT 1 cut(s) 219
SfaNI GCATC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 4 cut(s) 124, 280, 430, 439
SspI AATATT 2 cut(s) 43, 267
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 219, 412
TaqI TCGA 4 cut(s) 60, 289, 394, 500
TasI AATT 4 cut(s) 124, 280, 430, 439
TatI WGTACW 1 cut(s) 495
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 516
TseFI GTSAC 2 cut(s) 92, 364
TseI GCWGC 2 cut(s) 31, 383
Tsp45I GTSAC 2 cut(s) 92, 364
TspDTI ATGAA 2 cut(s) 276, 293
TspRI CASTG 1 cut(s) 516
VneI GTGCAC 1 cut(s) 507
XapI RAATTY 1 cut(s) 439
XspI CTAG 1 cut(s) 189
ZrmI AGTACT 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.