FvH4_3g39150

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007301
Physical Location & Seq
Reverse (-)
33376419 .. 33378287
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g39150.t1

Sequence Viewer

Length: 540 bp
ATGTCGCTTCCTAATGATGACAGTACTTCTTCAACTTCTGATGCACAGCTTAATAATATTTTTGGGGATCTACTGGATTCCATTATTGTTGATGTTGCATCTGAGTGCCATCGAATAGCAAAACTGGGACTTGATCGTAATTTTGAAGAAGAGGAAGAAGAAATGAGGCTTTCAGCCCAAGCACGAGTAAGGGTAGCTGATCCTAGTAATAGTAGTGAAGCAAATGGGAAATACGTGGTCGACATATTTGGACAGACTCATCCTCCTGTAGCGAATGAAATATTTGAGTGCATGAATTGTGGTCGAACTATCATGGCTGGAAGATTTGCTCCTCATTTGGAGAAGTGTATGGGAAAGGGTAGAAAGGCTCGTCTGAAGGTCACAAGAAGTAGCACAGCTGCACAGACTCGGCATACACGAGGCAACCCTGGTTCCACATACTCCAACTATTCAAATTCCAACAGCACAAGCCGGCTACCAAATGGAACGTCCAGTGTTGGAGGTGAGGAGTATTCAAATGGTGCATTGGAAGAGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

180

Amino Acids

19.42

Weight (kDa)

5.41

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 92 - 122 1e-16 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 240
AclWI GGATC 2 cut(s) 75, 194
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 395
AfaI GTAC 1 cut(s) 25
AgsI TTSAA 4 cut(s) 33, 146, 453, 516
AjnI CCWGG 1 cut(s) 427
AluBI AGCT 3 cut(s) 49, 197, 398
AluI AGCT 3 cut(s) 49, 197, 398
AlwI GGATC 2 cut(s) 75, 194
ApeKI GCWGC 1 cut(s) 398
ApoI RAATTY 1 cut(s) 454
ArsI GACNNNNNNTTYG 2 cut(s) 473, 505
AsuHPI GGTGA 1 cut(s) 515
BauI CACGAG 2 cut(s) 183, 417
BbvI GCAGC 1 cut(s) 385
BccI CCATC 1 cut(s) 117
BciT130I CCWGG 1 cut(s) 429
BfaI CTAG 1 cut(s) 204
BfmI CTRYAG 1 cut(s) 267
BisI GCNGC 1 cut(s) 399
BlsI GCNGC 1 cut(s) 400
BmcAI AGTACT 1 cut(s) 25
Bme1390I CCNGG 1 cut(s) 429
BmiI GGNNCC 1 cut(s) 433
BmrFI CCNGG 1 cut(s) 429
BmrI ACTGGG 1 cut(s) 134
BmsI GCATC 2 cut(s) 31, 107
BmuI ACTGGG 1 cut(s) 134
BsaAI YACGTR 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 427
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 3 cut(s) 78, 129, 492
BseBI CCWGG 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 427
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 93
BseNI ACTGG 3 cut(s) 78, 129, 492
BseRI GAGGAG 2 cut(s) 321, 521
BseXI GCAGC 1 cut(s) 385
BsgI GTGCAG 1 cut(s) 384
BsiSI CCGG 1 cut(s) 472
BslFI GGGAC 1 cut(s) 141
BsmFI GGGAC 1 cut(s) 141
Bsp143I GATC 3 cut(s) 67, 133, 199
BspCNI CTCAG 1 cut(s) 94
BspHI TCATGA 1 cut(s) 536
BspLI GGNNCC 1 cut(s) 433
BspPI GGATC 2 cut(s) 75, 194
BsrFI RCCGGY 1 cut(s) 471
BsrI ACTGG 3 cut(s) 78, 129, 492
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 427
BssMI GATC 3 cut(s) 67, 133, 199
BssSI CACGAG 2 cut(s) 183, 417
Bst2BI CACGAG 2 cut(s) 183, 417
Bst2UI CCWGG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 23
Bst6I CTCTTC 2 cut(s) 144, 525
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 1 cut(s) 102
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 3 cut(s) 70, 136, 202
BstMBI GATC 3 cut(s) 67, 133, 199
BstNI CCWGG 1 cut(s) 429
BstSCI CCNGG 1 cut(s) 427
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 67
BstYI RGATCY 1 cut(s) 67
BtsCI GGATG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 473
CciI TCATGA 1 cut(s) 536
Cfr10I RCCGGY 1 cut(s) 471
Csp6I GTAC 1 cut(s) 24
CviAII CATG 3 cut(s) 292, 313, 537
CviJI RGCY 9 cut(s) 49, 169, 176, 197, 317, 368, 398, 471, 475
CviKI_1 RGCY 9 cut(s) 49, 169, 176, 197, 317, 368, 398, 471, 475
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 69, 135, 201
DpnII GATC 3 cut(s) 67, 133, 199
Eam1104I CTCTTC 2 cut(s) 144, 525
EarI CTCTTC 2 cut(s) 144, 525
Eco57I CTGAAG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 427
FaeI CATG 3 cut(s) 295, 316, 540
FaiI YATR 7 cut(s) 245, 293, 314, 350, 414, 439, 538
FaqI GGGAC 1 cut(s) 141
FatI CATG 3 cut(s) 291, 312, 536
FblI GTMKAC 1 cut(s) 240
Fnu4HI GCNGC 1 cut(s) 399
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 399
FspBI CTAG 1 cut(s) 204
GluI GCNGC 1 cut(s) 399
HapII CCGG 1 cut(s) 472
Hin1II CATG 3 cut(s) 295, 316, 540
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 4 cut(s) 77, 256, 406, 533
HpaII CCGG 1 cut(s) 472
HphI GGTGA 1 cut(s) 515
Hpy166II GTNNAC 1 cut(s) 241
Hpy188I TCNGA 3 cut(s) 40, 103, 375
Hpy188III TCNNGA 1 cut(s) 537
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 370
HpyCH4III ACNGT 1 cut(s) 23
HpyCH4IV ACGT 2 cut(s) 234, 488
HpyCH4V TGCA 5 cut(s) 44, 98, 291, 401, 524
HpyF3I CTNAG 1 cut(s) 102
HpySE526I ACGT 2 cut(s) 234, 488
Hsp92II CATG 3 cut(s) 295, 316, 540
KroI GCCGGC 1 cut(s) 471
KroNI GCCGGC 1 cut(s) 473
Kzo9I GATC 3 cut(s) 67, 133, 199
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 8 cut(s) 59, 110, 279, 303, 414, 441, 485, 505
Lsp1109I GCAGC 1 cut(s) 385
LweI GCATC 2 cut(s) 31, 107
MaeI CTAG 1 cut(s) 204
MaeII ACGT 2 cut(s) 234, 488
MaeIII GTNAC 1 cut(s) 379
MalI GATC 3 cut(s) 69, 135, 201
MboI GATC 3 cut(s) 67, 133, 199
MboII GAAGA 6 cut(s) 21, 158, 161, 167, 170, 333
MflI RGATCY 1 cut(s) 67
MluCI AATT 3 cut(s) 139, 295, 454
MlyI GAGTC 2 cut(s) 250, 400
MmeI TCCRAC 3 cut(s) 468, 478, 483
MnlI CCTC 7 cut(s) 145, 159, 273, 342, 413, 494, 499
MroNI GCCGGC 1 cut(s) 471
MseI TTAA 1 cut(s) 51
MslI CAYNNNNRTG 1 cut(s) 103
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 1 cut(s) 472
MspR9I CCNGG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 429
NaeI GCCGGC 1 cut(s) 473
NdeII GATC 3 cut(s) 67, 133, 199
NgoMIV GCCGGC 1 cut(s) 471
NlaIII CATG 3 cut(s) 295, 316, 540
NlaIV GGNNCC 1 cut(s) 433
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 379
PagI TCATGA 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PdiI GCCGGC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 400
PleI GAGTC 2 cut(s) 250, 400
PpsI GAGTC 2 cut(s) 250, 400
Ppu21I YACGTR 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 427
PspGI CCWGG 1 cut(s) 427
PspN4I GGNNCC 1 cut(s) 433
PsuI RGATCY 1 cut(s) 67
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 103
SalI GTCGAC 1 cut(s) 239
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 1 cut(s) 399
Sau3AI GATC 3 cut(s) 67, 133, 199
ScaI AGTACT 1 cut(s) 25
SchI GAGTC 2 cut(s) 250, 400
ScrFI CCNGG 1 cut(s) 429
SetI ASST 7 cut(s) 51, 199, 237, 381, 400, 491, 505
SfaNI GCATC 2 cut(s) 31, 107
SfcI CTRYAG 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 103
Sse9I AATT 3 cut(s) 139, 295, 454
SspI AATATT 2 cut(s) 58, 282
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 427
TaaI ACNGT 1 cut(s) 23
TaiI ACGT 2 cut(s) 237, 491
TaqI TCGA 3 cut(s) 112, 240, 304
TasI AATT 3 cut(s) 139, 295, 454
TatI WGTACW 1 cut(s) 23
TfiI GAWTC 1 cut(s) 77
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 499
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 1 cut(s) 398
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 291, 308
TspRI CASTG 1 cut(s) 499
XapI RAATTY 1 cut(s) 454
XmiI GTMKAC 1 cut(s) 240
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.