AT5G58575

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007301
Physical Location & Seq
Forward (+)
23673533 .. 23675643
2111 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G58575.2

Sequence Viewer

Length: 546 bp
ATGTCTGGCGCAGAGGATAATAAATCTTCCCATGCTCAGCTTTCGTCCCAAATTTTTCTTGATCTTGTGGATTCGGTGATAGCTGATGTAGCATCTGAGTGTCATCGGGTAGCACGACTAGGACTTGATCGTGATTTGGATATAGTAGAAGAAGAGTTGAGATTGTCAGTGGAAGCGCGTGCGAAGATCGCTGATCCTAGCAACAACCTCGAAACCAACACCAAATATGTTGTTGATATATTTGGGCAGACTCACCCTCCTGTAGCTAGTGAAGTGTTCAATTGCATGAACTGTGGGCGACAAATTGTTGCAGGAAGGTTTGCTCCTCATCTCGAAAAATGCATGGGAAAGGGAAGAAAGGCTCGTGCCAAGACAACCAGAAGCACAACGGCTGCACAGAACCGGAATGCACGACGCAGCCCCAATCCACGATATTCTCCTTATCCAAATTCTGCTAGTGAGAACCAGTTAGCAAGTGGATCACCTGGTGTTGCAGGTGAAGACTGCTCAAATTTCACAGTTCGAGAGAACGTGAAAGGAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

181

Amino Acids

19.68

Weight (kDa)

6.9

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 90 - 120 3e-17 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 485
Acc36I ACCTGC 1 cut(s) 485
AccII CGCG 1 cut(s) 178
AclWI GGATC 2 cut(s) 188, 487
AcsI RAATTY 3 cut(s) 51, 448, 511
AdeI CACNNNGTG 1 cut(s) 488
AgsI TTSAA 1 cut(s) 280
AjnI CCWGG 1 cut(s) 484
AluBI AGCT 3 cut(s) 40, 83, 266
AluI AGCT 3 cut(s) 40, 83, 266
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 188, 487
ApeKI GCWGC 2 cut(s) 392, 417
ApoI RAATTY 3 cut(s) 51, 448, 511
AspLEI GCGC 2 cut(s) 11, 178
AsuHPI GGTGA 4 cut(s) 88, 245, 474, 509
BauI CACGAG 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 507
BbvI GCAGC 2 cut(s) 379, 429
BceAI ACGGC 1 cut(s) 405
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 4 cut(s) 119, 198, 267, 456
BfmI CTRYAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 485
BisI GCNGC 2 cut(s) 393, 418
BlpI GCTNAGC 1 cut(s) 36
BlsI GCNGC 2 cut(s) 394, 419
Bme1390I CCNGG 1 cut(s) 486
BmrFI CCNGG 1 cut(s) 486
BmsI GCATC 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 507
Bpu1102I GCTNAGC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bse1I ACTGG 1 cut(s) 466
BseBI CCWGG 1 cut(s) 486
BseMII CTCAG 2 cut(s) 50, 87
BseNI ACTGG 1 cut(s) 466
BseRI GAGGAG 1 cut(s) 315
BseXI GCAGC 2 cut(s) 379, 429
BsgI GTGCAG 1 cut(s) 378
Bsh1236I CGCG 1 cut(s) 178
BsiSI CCGG 1 cut(s) 403
BslFI GGGAC 1 cut(s) 31
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 412
Bsp143I GATC 5 cut(s) 61, 127, 186, 193, 479
Bsp1720I GCTNAGC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 49, 88
BspFNI CGCG 1 cut(s) 178
BspMI ACCTGC 1 cut(s) 485
BspPI GGATC 2 cut(s) 188, 487
BsrI ACTGG 1 cut(s) 466
BssMI GATC 5 cut(s) 61, 127, 186, 193, 479
BssSI CACGAG 1 cut(s) 363
Bst2BI CACGAG 1 cut(s) 363
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 2 cut(s) 293, 520
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 36, 96
BstFNI CGCG 1 cut(s) 178
BstHHI GCGC 2 cut(s) 11, 178
BstKTI GATC 5 cut(s) 64, 130, 189, 196, 482
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 5 cut(s) 61, 127, 186, 193, 479
BstMWI GCNNNNNNNGC 2 cut(s) 89, 188
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 261
BstUI CGCG 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 379, 429
BstV2I GAAGAC 1 cut(s) 507
BtsIMutI CAGTG 1 cut(s) 174
BveI ACCTGC 1 cut(s) 485
Cac8I GCNNGC 1 cut(s) 180
CfoI GCGC 2 cut(s) 11, 178
CseI GACGC 1 cut(s) 423
CsiI ACCWGGT 1 cut(s) 484
CviAII CATG 3 cut(s) 32, 286, 343
CviJI RGCY 6 cut(s) 40, 83, 266, 362, 392, 420
CviKI_1 RGCY 6 cut(s) 40, 83, 266, 362, 392, 420
DdeI CTNAG 2 cut(s) 36, 96
DpnI GATC 5 cut(s) 63, 129, 188, 195, 481
DpnII GATC 5 cut(s) 61, 127, 186, 193, 479
DraIII CACNNNGTG 1 cut(s) 488
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 484
EcoT22I ATGCAT 1 cut(s) 344
FaeI CATG 3 cut(s) 35, 289, 346
FaiI YATR 6 cut(s) 33, 143, 228, 239, 287, 344
FaqI GGGAC 1 cut(s) 31
FatI CATG 3 cut(s) 31, 285, 342
Fnu4HI GCNGC 2 cut(s) 393, 418
Fsp4HI GCNGC 2 cut(s) 393, 418
FspBI CTAG 4 cut(s) 119, 198, 267, 456
GlaI GCGC 2 cut(s) 10, 177
GluI GCNGC 2 cut(s) 393, 418
HapII CCGG 1 cut(s) 403
HgaI GACGC 1 cut(s) 423
HhaI GCGC 2 cut(s) 11, 178
Hin1II CATG 3 cut(s) 35, 289, 346
Hin6I GCGC 2 cut(s) 9, 176
HinP1I GCGC 2 cut(s) 9, 176
HinfI GANTC 2 cut(s) 71, 250
HpaII CCGG 1 cut(s) 403
HphI GGTGA 4 cut(s) 88, 245, 474, 509
Hpy188I TCNGA 1 cut(s) 97
Hpy188III TCNNGA 4 cut(s) 59, 131, 332, 524
Hpy99I CGWCG 1 cut(s) 417
HpyAV CCTTC 1 cut(s) 309
HpyCH4III ACNGT 2 cut(s) 293, 520
HpyCH4IV ACGT 1 cut(s) 531
HpyCH4V TGCA 6 cut(s) 285, 311, 342, 395, 410, 494
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 188
HpyF3I CTNAG 2 cut(s) 36, 96
HpySE526I ACGT 1 cut(s) 531
Hsp92II CATG 3 cut(s) 35, 289, 346
HspAI GCGC 2 cut(s) 9, 176
Kzo9I GATC 5 cut(s) 61, 127, 186, 193, 479
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 273, 297, 391, 416, 471, 479, 480, 498
Lsp1109I GCAGC 2 cut(s) 379, 429
LweI GCATC 1 cut(s) 101
MabI ACCWGGT 1 cut(s) 484
MaeI CTAG 4 cut(s) 119, 198, 267, 456
MaeII ACGT 1 cut(s) 531
MalI GATC 5 cut(s) 63, 129, 188, 195, 481
MboI GATC 5 cut(s) 61, 127, 186, 193, 479
MboII GAAGA 6 cut(s) 18, 161, 164, 196, 366, 512
MfeI CAATTG 1 cut(s) 280
MluCI AATT 5 cut(s) 51, 280, 303, 448, 511
MlyI GAGTC 1 cut(s) 244
MnlI CCTC 4 cut(s) 7, 218, 267, 336
Mph1103I ATGCAT 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 97
MspI CCGG 1 cut(s) 403
MspR9I CCNGG 1 cut(s) 486
MunI CAATTG 1 cut(s) 280
Mva1269I GAATGC 1 cut(s) 412
MvaI CCWGG 1 cut(s) 486
MvnI CGCG 1 cut(s) 178
MwoI GCNNNNNNNGC 2 cut(s) 89, 188
NdeII GATC 5 cut(s) 61, 127, 186, 193, 479
NlaIII CATG 3 cut(s) 35, 289, 346
NsiI ATGCAT 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 485
PcsI WCGNNNNNNNCGW 1 cut(s) 112
PctI GAATGC 1 cut(s) 412
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 394, 419
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 484
PspGI CCWGG 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 97
SatI GCNGC 2 cut(s) 393, 418
Sau3AI GATC 5 cut(s) 61, 127, 186, 193, 479
SchI GAGTC 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 486
SetI ASST 8 cut(s) 42, 85, 210, 268, 320, 487, 499, 534
SexAI ACCWGGT 1 cut(s) 484
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 261
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 5 cut(s) 51, 280, 303, 448, 511
SspMI CTAG 4 cut(s) 119, 198, 267, 456
StyD4I CCNGG 1 cut(s) 484
TaaI ACNGT 2 cut(s) 293, 520
TaiI ACGT 1 cut(s) 534
TaqI TCGA 3 cut(s) 210, 333, 523
TasI AATT 5 cut(s) 51, 280, 303, 448, 511
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 1 cut(s) 174
TseI GCWGC 2 cut(s) 392, 417
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 174
XapI RAATTY 3 cut(s) 51, 448, 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 473
XspI CTAG 4 cut(s) 119, 198, 267, 456
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.