Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0007301

Physical Location & Seq

Genomic Coordinates Reverse (-)

6081801 .. 6082367

Gene Structure 567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1071300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAATTGCGGTCGGTCTATCGTGGATGGGAGGTTTTCTCCTCATCTGGAGAAGTGTATGGGAAAGGGTAGGAAGACTCACCTCAAGGTGACAAGAATTAGCACGGTTGCACAGACTCGGAATTCACAGGGAAACCCTGCTTCCACATACTCAACATATTCAAGTTCCAACAGCATAAGCCGGTTATCAAATGGAGCATCGGGTGTTGCTCGTGAGGAGTACTCGAATGGTGCATCGGAAGAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

83

Amino Acids

8.8

Weight (kDa)

9.69

Isoelectric Point (pI)

34.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sgf11	PF08209	2 - 25	3e-11	Sgf11 (transcriptional regulation protein)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58575 AT5G58575
fragaria_vesca	FvH4_3g39150 FvH4_3g39150
malus_domestica	MD03G1063100.v1.1 MD11G1066600.v1.1 MD11G1071300.v1.1 MD11G1152800.v1.1
prunus_persica	Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1
pyrus_communis	pycom11g05640 pycom11g05660 pycom11g05950
rosa_chinensis	RchiOBHm_Chr5g0070551
rosa_laevigata	RLG00000036140
rosa_multiflora	Rmu_sc0002443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010650
rosa_rugosa	Rorug05G0406900 Rorug05G0407000
rosa_samantha	Rh5AG462300 Rh5BG480400 Rh5CG504700 Rh5DG492400
rosa_wichuraiana	Rw5G043050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	9
AcsI	RAATTY	1 cut(s)	121
AfaI	GTAC	1 cut(s)	221
AgsI	TTSAA	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	71, 100
BauI	CACGAG	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	80
BccI	CCATC	1 cut(s)	20
BmcAI	AGTACT	1 cut(s)	221
BmsI	GCATC	2 cut(s)	206, 242
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 206, 238
BpmI	CTGGAG	1 cut(s)	68
BpuEI	CTTGAG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	180
BseGI	GGATG	1 cut(s)	31
BseRI	GAGGAG	2 cut(s)	30, 230
Bsh1285I	CGRYCG	1 cut(s)	13
BsiEI	CGRYCG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	181
BspACI	CCGC	1 cut(s)	9
BspQI	GCTCTTC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	180
BssAI	RCCGGY	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	210
Bst2BI	CACGAG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	31
BstMCI	CGRYCG	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	2 cut(s)	180, 244
CviKI_1	RGCY	2 cut(s)	180, 244
CviQI	GTAC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
EcoRI	GAATTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	59, 148, 157, 176, 247
FatI	CATG	1 cut(s)	245
FokI	GGATG	1 cut(s)	38
GsuI	CTGGAG	1 cut(s)	68
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	1 cut(s)	249
HinfI	GANTC	2 cut(s)	76, 115
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	71, 100
Hpy188I	TCNGA	2 cut(s)	120, 238
Hpy188III	TCNNGA	2 cut(s)	47, 212
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	110, 233
Hsp92II	CATG	1 cut(s)	249
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	194
LpnPI	CCDG	4 cut(s)	32, 113, 150, 194
LweI	GCATC	2 cut(s)	206, 242
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	3 cut(s)	4, 96, 121
MlyI	GAGTC	2 cut(s)	70, 109
MmeI	TCCRAC	1 cut(s)	192
MnlI	CCTC	4 cut(s)	24, 51, 92, 208
MspI	CCGG	1 cut(s)	181
NlaIII	CATG	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	88
PciSI	GCTCTTC	1 cut(s)	234
PleI	GAGTC	2 cut(s)	70, 109
PpsI	GAGTC	2 cut(s)	70, 109
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SapI	GCTCTTC	1 cut(s)	234
ScaI	AGTACT	1 cut(s)	221
SchI	GAGTC	2 cut(s)	70, 109
SetI	ASST	3 cut(s)	35, 84, 90
SfaNI	GCATC	2 cut(s)	206, 242
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	4, 96, 121
SsiI	CCGC	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	224
TasI	AATT	3 cut(s)	4, 96, 121
TatI	WGTACW	1 cut(s)	219
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	121
ZrmI	AGTACT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.