MD11G1066600.v1.1

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007301
Physical Location & Seq
Forward (+)
5717187 .. 5719216
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1066600.v1.1.491

Sequence Viewer

Length: 546 bp
ATGTCGCTTCCAAATGAAGGAAATGATATGTCCTCTTCTTCCGATGTTCAGCTGTCATCTCATGTTTTTGTGGATCTCCTCGATTCGATCATTGTTGATGTTGCATCTGAGTGTCATCGAATAGCGAAGTTGGGTCTTGATCGTAAGTTTGAAGAAGAGGAAGAAGAACTAAGGCTGTCAGCCCAAGCACGGGTGAGGGTAGCTGATCCTAGTAATAGTGGTGAAGCAGATAGCAAGTACGTGGTTGACATATTTGGGCAGAATCATCCTTCTGTAGCCAGCGAAGTGTTTGAGTGCATGAATTGTGGTCGGCCTATCGTGGCTGGGAGGTTTGCTCCTCATCTGGAGAAGTGTATGGGAAAGGGTAGAAAGGCTCGCCTCAAGGTGACAAGAAGTAGCACGGCTGCACAGACTCGGAATTCTCGGGGAAGCTCTGCTTCCACATACTCCACATATTCAAATTCCAACAGCACAAGCCGGTTATCAAATGGAGCATCCGGTGTTGCTGGTGAGGAGTACTCAAATGGTACATTGGAAGAGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

182

Amino Acids

19.51

Weight (kDa)

5.43

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 94 - 124 8.2e-17 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 81, 200
AcsI RAATTY 2 cut(s) 418, 460
AfaI GTAC 3 cut(s) 239, 518, 529
AfiI CCNNNNNNNGG 3 cut(s) 17, 189, 190
AgsI TTSAA 2 cut(s) 152, 459
AluBI AGCT 3 cut(s) 52, 203, 432
AluI AGCT 3 cut(s) 52, 203, 432
AlwI GGATC 2 cut(s) 81, 200
Ama87I CYCGRG 1 cut(s) 423
AoxI GGCC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 418, 460
AsuHPI GGTGA 4 cut(s) 205, 233, 397, 521
AvaI CYCGRG 1 cut(s) 423
BbvI GCAGC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 417
BfaI CTAG 1 cut(s) 210
BfmI CTRYAG 1 cut(s) 273
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmcAI AGTACT 1 cut(s) 518
BmeT110I CYCGRG 1 cut(s) 423
BmsI GCATC 2 cut(s) 113, 503
BplI GAGNNNNNCTC 4 cut(s) 319, 351, 503, 535
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 365
BsaAI YACGTR 1 cut(s) 241
BsaWI WCCGGW 1 cut(s) 497
Bsc4I CCNNNNNNNGG 3 cut(s) 17, 189, 190
Bse118I RCCGGY 1 cut(s) 477
BseGI GGATG 2 cut(s) 265, 494
BseLI CCNNNNNNNGG 3 cut(s) 17, 189, 190
BseMII CTCAG 1 cut(s) 99
BseRI GAGGAG 3 cut(s) 68, 327, 527
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 323
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 1 cut(s) 313
BsiHKCI CYCGRG 1 cut(s) 423
BsiSI CCGG 2 cut(s) 478, 498
BslI CCNNNNNNNGG 3 cut(s) 17, 189, 190
BsnI GGCC 1 cut(s) 313
BsoBI CYCGRG 1 cut(s) 423
Bsp143I GATC 4 cut(s) 73, 87, 139, 205
BspANI GGCC 1 cut(s) 313
BspCNI CTCAG 1 cut(s) 100
BspPI GGATC 2 cut(s) 81, 200
BspQI GCTCTTC 1 cut(s) 531
BsrFI RCCGGY 1 cut(s) 477
BssAI RCCGGY 1 cut(s) 477
BssMI GATC 4 cut(s) 73, 87, 139, 205
Bst6I CTCTTC 3 cut(s) 40, 150, 531
BstBAI YACGTR 1 cut(s) 241
BstC8I GCNNGC 2 cut(s) 280, 376
BstDEI CTNAG 2 cut(s) 108, 170
BstF5I GGATG 2 cut(s) 265, 494
BstKTI GATC 4 cut(s) 76, 90, 142, 208
BstMBI GATC 4 cut(s) 73, 87, 139, 205
BstSFI CTRYAG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
BsuRI GGCC 1 cut(s) 313
BtsCI GGATG 2 cut(s) 265, 494
Cac8I GCNNGC 2 cut(s) 280, 376
Cfr10I RCCGGY 1 cut(s) 477
Csp6I GTAC 3 cut(s) 238, 517, 528
CviAII CATG 3 cut(s) 62, 298, 543
CviQI GTAC 3 cut(s) 238, 517, 528
DdeI CTNAG 2 cut(s) 108, 170
DpnI GATC 4 cut(s) 75, 89, 141, 207
DpnII GATC 4 cut(s) 73, 87, 139, 205
Eam1104I CTCTTC 3 cut(s) 40, 150, 531
EarI CTCTTC 3 cut(s) 40, 150, 531
Eco88I CYCGRG 1 cut(s) 423
EcoRI GAATTC 1 cut(s) 418
FaeI CATG 3 cut(s) 65, 301, 546
FaiI YATR 8 cut(s) 29, 63, 251, 299, 356, 445, 454, 544
FalI AAGNNNNNCTT 2 cut(s) 421, 453
FatI CATG 3 cut(s) 61, 297, 542
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 252, 481
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 210
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 1 cut(s) 313
HapII CCGG 2 cut(s) 478, 498
Hin1II CATG 3 cut(s) 65, 301, 546
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 3 cut(s) 83, 262, 412
HpaII CCGG 2 cut(s) 478, 498
HphI GGTGA 4 cut(s) 205, 233, 397, 521
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 43, 109, 417
Hpy188III TCNNGA 2 cut(s) 137, 344
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 2 cut(s) 11, 279
HpyCH4IV ACGT 1 cut(s) 240
HpyCH4V TGCA 3 cut(s) 104, 297, 407
HpyF3I CTNAG 2 cut(s) 108, 170
HpySE526I ACGT 1 cut(s) 240
Hsp92II CATG 3 cut(s) 65, 301, 546
Kzo9I GATC 4 cut(s) 73, 87, 139, 205
LguI GCTCTTC 1 cut(s) 531
LmnI GCTCC 2 cut(s) 340, 491
LpnPI CCDG 6 cut(s) 292, 309, 329, 491, 492, 511
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 113, 503
MaeI CTAG 1 cut(s) 210
MaeII ACGT 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 385
MalI GATC 4 cut(s) 75, 89, 141, 207
MboI GATC 4 cut(s) 73, 87, 139, 205
MboII GAAGA 6 cut(s) 27, 30, 164, 167, 173, 176
MflI RGATCY 1 cut(s) 73
MluCI AATT 3 cut(s) 301, 418, 460
MlyI GAGTC 1 cut(s) 406
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 8 cut(s) 43, 89, 151, 189, 321, 348, 389, 505
MslI CAYNNNNRTG 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 52
MspI CCGG 2 cut(s) 478, 498
NdeII GATC 4 cut(s) 73, 87, 139, 205
NlaIII CATG 3 cut(s) 65, 301, 546
NmuCI GTSAC 1 cut(s) 385
PciSI GCTCTTC 1 cut(s) 531
PfeI GAWTC 2 cut(s) 83, 262
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 1 cut(s) 406
PpsI GAGTC 1 cut(s) 406
Ppu21I YACGTR 1 cut(s) 241
PspFI CCCAGC 1 cut(s) 323
PsuI RGATCY 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 52
RsaI GTAC 3 cut(s) 239, 518, 529
RsaNI GTAC 3 cut(s) 238, 517, 528
RseI CAYNNNNRTG 1 cut(s) 109
SapI GCTCTTC 1 cut(s) 531
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 4 cut(s) 73, 87, 139, 205
ScaI AGTACT 1 cut(s) 518
SchI GAGTC 1 cut(s) 406
SetI ASST 6 cut(s) 54, 205, 243, 332, 387, 434
SfaNI GCATC 2 cut(s) 113, 503
SfcI CTRYAG 1 cut(s) 273
SmiMI CAYNNNNRTG 1 cut(s) 109
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 3 cut(s) 301, 418, 460
SspMI CTAG 1 cut(s) 210
TaiI ACGT 1 cut(s) 243
TaqI TCGA 3 cut(s) 81, 86, 118
TasI AATT 3 cut(s) 301, 418, 460
TatI WGTACW 1 cut(s) 516
TfiI GAWTC 2 cut(s) 83, 262
TseFI GTSAC 1 cut(s) 385
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 385
TspDTI ATGAA 2 cut(s) 30, 314
XapI RAATTY 2 cut(s) 418, 460
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.