Rh5BG480400

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0007301
Physical Location & Seq
Reverse (-)
76411616 .. 76413787
2172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG480400.1

Sequence Viewer

Length: 384 bp
ATGGTTCCTTTCTTTTATGGCCTGTGCTTGCAGCTTAATAATATTTTTGGGGATCTACTCGATTCCATTATTGTTGATGTTGCATCTGAGTGTCACCGAATAGCAAAGTTGGGACTTGATCGTAATTTTGAAGAAGAGGAAGAAGAAATGAGGCTTTCAGCCCAAGCACGGGTAAGGGTAGCTGATCCTAGTAATAGTAGTGAAGCAAATGGCAAGTACCTGGTTGACATATTTGGACAGACTCATCCTCCTGTAGCCAATGAAATATTTGAGTGCATGAATTGTGGTCGAACTATCATGGCCGGAAGATTTGCTCCTCATTTGGAGAAGTGTATGGGAAAGGTGAGCCTATGCCATCTCATTGTAGTATACATCTTTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

127

Amino Acids

14.28

Weight (kDa)

5.11

Isoelectric Point (pI)

56.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 87 - 114 1.8e-15 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 369
AclWI GGATC 2 cut(s) 60, 179
AcoI YGGCCR 1 cut(s) 300
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 168, 169
AgsI TTSAA 1 cut(s) 131
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 2 cut(s) 34, 182
AluI AGCT 2 cut(s) 34, 182
AlwI GGATC 2 cut(s) 60, 179
AoxI GGCC 2 cut(s) 19, 300
ApeKI GCWGC 1 cut(s) 31
AsuHPI GGTGA 2 cut(s) 86, 355
BbvI GCAGC 1 cut(s) 43
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 1 cut(s) 221
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 1 cut(s) 32
BlsI GCNGC 1 cut(s) 33
Bme1390I CCNGG 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 232, 262
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 169
BseBI CCWGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 168, 169
BseMII CTCAG 1 cut(s) 78
BseRI GAGGAG 1 cut(s) 306
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 21, 302
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 168, 169
BsmFI GGGAC 1 cut(s) 126
BsnI GGCC 2 cut(s) 21, 302
Bsp143I GATC 3 cut(s) 52, 118, 184
BspANI GGCC 2 cut(s) 21, 302
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 60, 179
BssMI GATC 3 cut(s) 52, 118, 184
BssNAI GTATAC 1 cut(s) 370
Bst1107I GTATAC 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 221
Bst6I CTCTTC 1 cut(s) 129
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 3 cut(s) 55, 121, 187
BstMBI GATC 3 cut(s) 52, 118, 184
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 219
BstSFI CTRYAG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 370
BsuRI GGCC 2 cut(s) 21, 302
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 29
CsiI ACCWGGT 1 cut(s) 219
Csp6I GTAC 1 cut(s) 217
CviAII CATG 2 cut(s) 277, 298
CviJI RGCY 8 cut(s) 21, 34, 154, 161, 182, 257, 302, 348
CviKI_1 RGCY 8 cut(s) 21, 34, 154, 161, 182, 257, 302, 348
CviQI GTAC 1 cut(s) 217
DdeI CTNAG 1 cut(s) 87
DpnI GATC 3 cut(s) 54, 120, 186
DpnII GATC 3 cut(s) 52, 118, 184
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 219
FaeI CATG 2 cut(s) 280, 301
FaiI YATR 7 cut(s) 18, 230, 278, 299, 335, 352, 370
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 276, 297
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 32
FokI GGATG 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 32
FspBI CTAG 1 cut(s) 189
GluI GCNGC 1 cut(s) 32
HaeIII GGCC 2 cut(s) 21, 302
HapII CCGG 1 cut(s) 303
Hin1II CATG 2 cut(s) 280, 301
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 62, 241
HpaII CCGG 1 cut(s) 303
HphI GGTGA 2 cut(s) 86, 355
Hpy166II GTNNAC 2 cut(s) 226, 370
Hpy188I TCNGA 1 cut(s) 88
Hpy8I GTNNAC 2 cut(s) 226, 370
HpyCH4V TGCA 3 cut(s) 31, 83, 276
HpyF3I CTNAG 1 cut(s) 87
Hsp92II CATG 2 cut(s) 280, 301
Kzo9I GATC 3 cut(s) 52, 118, 184
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 5 cut(s) 35, 206, 233, 264, 316
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 1 cut(s) 219
MaeI CTAG 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 54, 120, 186
MboI GATC 3 cut(s) 52, 118, 184
MboII GAAGA 5 cut(s) 143, 146, 152, 155, 318
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 124, 280
MlyI GAGTC 1 cut(s) 235
MnlI CCTC 4 cut(s) 130, 144, 258, 327
MseI TTAA 2 cut(s) 36, 382
MslI CAYNNNNRTG 1 cut(s) 88
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 1 cut(s) 221
MvaI CCWGG 1 cut(s) 221
NdeII GATC 3 cut(s) 52, 118, 184
NlaIII CATG 2 cut(s) 280, 301
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 92
PfeI GAWTC 1 cut(s) 62
PkrI GCNGC 1 cut(s) 33
PleI GAGTC 1 cut(s) 235
PpsI GAGTC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 88
SaqAI TTAA 2 cut(s) 36, 382
SatI GCNGC 1 cut(s) 32
Sau3AI GATC 3 cut(s) 52, 118, 184
SchI GAGTC 1 cut(s) 235
ScrFI CCNGG 1 cut(s) 221
SetI ASST 4 cut(s) 36, 184, 222, 345
SexAI ACCWGGT 1 cut(s) 219
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 252
SmiMI CAYNNNNRTG 1 cut(s) 88
Sse9I AATT 2 cut(s) 124, 280
SspI AATATT 2 cut(s) 43, 267
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 1 cut(s) 219
TaqI TCGA 2 cut(s) 60, 289
TasI AATT 2 cut(s) 124, 280
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 2 cut(s) 36, 382
Tru9I TTAA 2 cut(s) 36, 382
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 2 cut(s) 276, 293
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.