MD11G1152800.v1.1

SAGA-associated factor 11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007301
Physical Location & Seq
Reverse (-)
14674142 .. 14674687
546 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1152800.v1.1.491

Sequence Viewer

Length: 396 bp
ATGACTTTAATGGTAAGTGGTTCCATACTAGTAAGTTCTTTCATCTTATGTTTTGTGGATCTCTTCGATTCAATCATTGTTGATGTTGCATCTGAGTGTCATCGAATAGTGAAGTTGGGTCTTGATCGTAATTTTGAAGAAGATGAAGAAGAACTAAGGTTGTCAGCCCAAGCACAGGTGAGGGTAGCTGATCCTAGTAATAGTGGTGAAGCTAATAACAAGTATGTGGTTGACATATTTGGGCAGAATCATCCTTCTGTAGCCATCGAAGTGTTTGAGTGCATGACTTGTGGTCGGTTTATCTTGGCTGGGAAGTTTGCTCCTCATCTGGAGAAGTGTATGGGAAAGGCTAGAAAGGCTCACCTCAAGGTGACAAGAAGTAGCATGGCTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sgf11

Protein Analysis

132

Amino Acids

14.45

Weight (kDa)

5.77

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sgf11 PF08209 90 - 119 5.5e-12 Sgf11 (transcriptional regulation protein)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 66, 185
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 2 cut(s) 72, 137
AhdI GACNNNNNGTC 1 cut(s) 291
AhlI ACTAGT 1 cut(s) 28
AluBI AGCT 2 cut(s) 188, 212
AluI AGCT 2 cut(s) 188, 212
AlwI GGATC 2 cut(s) 66, 185
ApeKI GCWGC 1 cut(s) 389
AsuHPI GGTGA 4 cut(s) 190, 218, 353, 382
BbvI GCAGC 1 cut(s) 376
BccI CCATC 1 cut(s) 272
BcuI ACTAGT 1 cut(s) 28
BfaI CTAG 3 cut(s) 29, 195, 351
BfmI CTRYAG 1 cut(s) 258
BisI GCNGC 1 cut(s) 390
BlsI GCNGC 1 cut(s) 391
BmeRI GACNNNNNGTC 1 cut(s) 291
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 98
BpmI CTGGAG 1 cut(s) 350
BpuEI CTTGAG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 308
BslI CCNNNNNNNGG 1 cut(s) 175
Bsp143I GATC 3 cut(s) 58, 124, 190
BspCNI CTCAG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 2 cut(s) 66, 185
BssMI GATC 3 cut(s) 58, 124, 190
Bst6I CTCTTC 1 cut(s) 68
BstDEI CTNAG 2 cut(s) 93, 155
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 3 cut(s) 61, 127, 193
BstMBI GATC 3 cut(s) 58, 124, 190
BstMWI GCNNNNNNNGC 1 cut(s) 356
BstSFI CTRYAG 1 cut(s) 258
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 1 cut(s) 58
BstYI RGATCY 1 cut(s) 58
BtsCI GGATG 1 cut(s) 250
CviAII CATG 2 cut(s) 283, 385
CviJI RGCY 8 cut(s) 167, 188, 212, 263, 308, 350, 359, 389
CviKI_1 RGCY 8 cut(s) 167, 188, 212, 263, 308, 350, 359, 389
DdeI CTNAG 2 cut(s) 93, 155
DpnI GATC 3 cut(s) 60, 126, 192
DpnII GATC 3 cut(s) 58, 124, 190
DriI GACNNNNNGTC 1 cut(s) 291
Eam1104I CTCTTC 1 cut(s) 68
Eam1105I GACNNNNNGTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 68
FaeI CATG 2 cut(s) 286, 388
FaiI YATR 8 cut(s) 26, 49, 225, 236, 284, 341, 386, 394
FatI CATG 2 cut(s) 282, 384
Fnu4HI GCNGC 1 cut(s) 390
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 1 cut(s) 390
FspBI CTAG 3 cut(s) 29, 195, 351
GluI GCNGC 1 cut(s) 390
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 350
Hin1II CATG 2 cut(s) 286, 388
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 68, 247
HphI GGTGA 4 cut(s) 190, 218, 353, 382
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 94
Hpy188III TCNNGA 2 cut(s) 122, 329
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 89, 282, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 356
HpyF3I CTNAG 2 cut(s) 93, 155
Hsp92II CATG 2 cut(s) 286, 388
Kzo9I GATC 3 cut(s) 58, 124, 190
LmnI GCTCC 1 cut(s) 325
LpnPI CCDG 3 cut(s) 161, 294, 314
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 98
MaeI CTAG 3 cut(s) 29, 195, 351
MaeIII GTNAC 1 cut(s) 370
MalI GATC 3 cut(s) 60, 126, 192
MboI GATC 3 cut(s) 58, 124, 190
MboII GAAGA 5 cut(s) 55, 149, 152, 158, 161
MflI RGATCY 1 cut(s) 58
MluCI AATT 1 cut(s) 130
MnlI CCTC 3 cut(s) 174, 333, 374
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 2 cut(s) 94, 269
MwoI GCNNNNNNNGC 1 cut(s) 356
NdeII GATC 3 cut(s) 58, 124, 190
NlaIII CATG 2 cut(s) 286, 388
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 370
PfeI GAWTC 2 cut(s) 68, 247
PkrI GCNGC 1 cut(s) 391
PspFI CCCAGC 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 58
RseI CAYNNNNRTG 2 cut(s) 94, 269
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 1 cut(s) 390
Sau3AI GATC 3 cut(s) 58, 124, 190
SetI ASST 6 cut(s) 161, 180, 190, 214, 366, 372
SfaNI GCATC 1 cut(s) 98
SfcI CTRYAG 1 cut(s) 258
SmiMI CAYNNNNRTG 2 cut(s) 94, 269
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SpeI ACTAGT 1 cut(s) 28
Sse9I AATT 1 cut(s) 130
SspMI CTAG 3 cut(s) 29, 195, 351
TaqI TCGA 3 cut(s) 66, 103, 267
TasI AATT 1 cut(s) 130
TfiI GAWTC 2 cut(s) 68, 247
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseFI GTSAC 1 cut(s) 370
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 370
TspDTI ATGAA 2 cut(s) 31, 159
XspI CTAG 3 cut(s) 29, 195, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.