Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002443.1

Orthogroup ID

OG0007301

Physical Location & Seq

Genomic Coordinates Reverse (-)

11311 .. 12587

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002443.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtcgcttcctaatgaagacagtacgtcttcaacttctgatgcacagcttaataatatttttggggatctactcgattccattattgttgatgttgcatctgagtgtcaccgaatagcaaagttgggacttgatcgtaattttgaagaagaggaagaagaaatgaggctttcagcccaagcacgggtaagggtagcggatcctagtaatagtagtgaagcaaatggcaagtacctggttgacatatttggacagactcatcctcctgtagccaatgaaatatttgagtgcatgaattgtggtcgaactatcatggccggaagatttgctcctcatttggagaagtgtatgggaaagggtagaaaggctcgtctgaaggtgacaagaagtagcacggctgcacagactcgacatacacgaggcaaccctggttccacatactccaattattcaaattccaacagcacaagccggctaccaaatggaacatcaagtgctggaggtgaggagtactcgaatggtgcactggaagagtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sgf11

Protein Analysis

179

Amino Acids

19.42

Weight (kDa)

5.42

Isoelectric Point (pI)

49.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58575 AT5G58575
fragaria_vesca	FvH4_3g39150 FvH4_3g39150
malus_domestica	MD03G1063100.v1.1 MD11G1066600.v1.1 MD11G1071300.v1.1 MD11G1152800.v1.1
prunus_persica	Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1 Prupe.6G053100_v2.0.a1
pyrus_communis	pycom11g05640 pycom11g05660 pycom11g05950
rosa_chinensis	RchiOBHm_Chr5g0070551
rosa_laevigata	RLG00000036140
rosa_multiflora	Rmu_sc0002443.1_g000005
rosa_roxburghii	Rroxscaffold_1G00010650
rosa_rugosa	Rorug05G0406900 Rorug05G0407000
rosa_samantha	Rh5AG462300 Rh5BG480400 Rh5CG504700 Rh5DG492400
rosa_wichuraiana	Rw5G043050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	3 cut(s)	75, 194, 207
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	1 cut(s)	454
AcuI	CTGAAG	1 cut(s)	395
AfaI	GTAC	3 cut(s)	25, 233, 512
AfiI	CCNNNNNNNGG	2 cut(s)	183, 184
AgsI	TTSAA	3 cut(s)	33, 146, 453
AhdI	GACNNNNNGTC	1 cut(s)	25
AjnI	CCWGG	2 cut(s)	234, 427
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
Alw21I	GWGCWC	1 cut(s)	526
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	75, 194, 207
AoxI	GGCC	1 cut(s)	315
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	101, 391, 515
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	199
BauI	CACGAG	1 cut(s)	417
BbsI	GAAGAC	2 cut(s)	21, 24
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	1 cut(s)	385
BceAI	ACGGC	1 cut(s)	411
BciT130I	CCWGG	2 cut(s)	236, 429
BfaI	CTAG	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmcAI	AGTACT	1 cut(s)	512
Bme1390I	CCNGG	2 cut(s)	236, 429
BmeRI	GACNNNNNGTC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	201, 433
BmrFI	CCNGG	2 cut(s)	236, 429
BmsI	GCATC	2 cut(s)	31, 107
BpiI	GAAGAC	2 cut(s)	21, 24
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpmI	CTGGAG	1 cut(s)	519
BsaJI	CCNNGG	1 cut(s)	427
BsaXI	ACNNNNNCTCC	2 cut(s)	247, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 184
Bse118I	RCCGGY	1 cut(s)	471
Bse1I	ACTGG	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	236, 429
BseDI	CCNNGG	1 cut(s)	427
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	183, 184
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	531
BseRI	GAGGAG	2 cut(s)	321, 521
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	318, 472
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	183, 184
BsmFI	GGGAC	1 cut(s)	141
BsnI	GGCC	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	67, 133, 199
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	317
BspCNI	CTCAG	1 cut(s)	94
BspHI	TCATGA	1 cut(s)	536
BspLI	GGNNCC	2 cut(s)	201, 433
BspPI	GGATC	3 cut(s)	75, 194, 207
BsrFI	RCCGGY	1 cut(s)	471
BsrI	ACTGG	1 cut(s)	531
BssAI	RCCGGY	1 cut(s)	471
BssECI	CCNNGG	1 cut(s)	427
BssMI	GATC	3 cut(s)	67, 133, 199
BssSI	CACGAG	1 cut(s)	417
Bst2BI	CACGAG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	236, 429
Bst4CI	ACNGT	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	144, 525
BstC8I	GCNNGC	1 cut(s)	473
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	3 cut(s)	70, 136, 202
BstMBI	GATC	3 cut(s)	67, 133, 199
BstNI	CCWGG	2 cut(s)	236, 429
BstSCI	CCNGG	2 cut(s)	234, 427
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	2 cut(s)	21, 24
BstX2I	RGATCY	2 cut(s)	67, 199
BstYI	RGATCY	2 cut(s)	67, 199
BsuRI	GGCC	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	524
Cac8I	GCNNGC	1 cut(s)	473
CciI	TCATGA	1 cut(s)	536
Cfr10I	RCCGGY	1 cut(s)	471
CsiI	ACCWGGT	1 cut(s)	234
Csp6I	GTAC	3 cut(s)	24, 232, 511
CviAII	CATG	3 cut(s)	292, 313, 537
CviJI	RGCY	9 cut(s)	49, 169, 176, 272, 317, 368, 398, 471, 475
CviKI_1	RGCY	9 cut(s)	49, 169, 176, 272, 317, 368, 398, 471, 475
CviQI	GTAC	3 cut(s)	24, 232, 511
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	3 cut(s)	69, 135, 201
DpnII	GATC	3 cut(s)	67, 133, 199
DriI	GACNNNNNGTC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	315
Eam1104I	CTCTTC	2 cut(s)	144, 525
Eam1105I	GACNNNNNGTC	1 cut(s)	25
EarI	CTCTTC	2 cut(s)	144, 525
Eco57I	CTGAAG	1 cut(s)	395
EcoRII	CCWGG	2 cut(s)	234, 427
FaeI	CATG	3 cut(s)	295, 316, 540
FaiI	YATR	7 cut(s)	245, 293, 314, 350, 414, 439, 538
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	291, 312, 536
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	1 cut(s)	204
GluI	GCNGC	1 cut(s)	399
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	1 cut(s)	317
HapII	CCGG	2 cut(s)	318, 472
Hin1II	CATG	3 cut(s)	295, 316, 540
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HinfI	GANTC	4 cut(s)	77, 256, 406, 533
HpaII	CCGG	2 cut(s)	318, 472
HphI	GGTGA	3 cut(s)	101, 391, 515
Hpy166II	GTNNAC	2 cut(s)	241, 524
Hpy188I	TCNGA	3 cut(s)	40, 103, 375
Hpy188III	TCNNGA	1 cut(s)	537
Hpy8I	GTNNAC	2 cut(s)	241, 524
HpyAV	CCTTC	1 cut(s)	370
HpyCH4III	ACNGT	1 cut(s)	23
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	5 cut(s)	44, 98, 291, 401, 524
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	3 cut(s)	295, 316, 540
KroI	GCCGGC	1 cut(s)	471
KroNI	GCCGGC	1 cut(s)	473
Kzo9I	GATC	3 cut(s)	67, 133, 199
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	9 cut(s)	221, 248, 279, 331, 414, 441, 483, 485, 512
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	2 cut(s)	31, 107
MabI	ACCWGGT	1 cut(s)	234
MaeI	CTAG	1 cut(s)	204
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	2 cut(s)	107, 379
MalI	GATC	3 cut(s)	69, 135, 201
MboI	GATC	3 cut(s)	67, 133, 199
MboII	GAAGA	7 cut(s)	21, 29, 158, 161, 167, 170, 333
MflI	RGATCY	2 cut(s)	67, 199
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	4 cut(s)	139, 295, 445, 454
MlyI	GAGTC	2 cut(s)	250, 400
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	7 cut(s)	145, 159, 273, 342, 413, 494, 499
MroNI	GCCGGC	1 cut(s)	471
MseI	TTAA	1 cut(s)	51
MslI	CAYNNNNRTG	1 cut(s)	103
MspI	CCGG	2 cut(s)	318, 472
MspR9I	CCNGG	2 cut(s)	236, 429
MvaI	CCWGG	2 cut(s)	236, 429
NaeI	GCCGGC	1 cut(s)	473
NdeII	GATC	3 cut(s)	67, 133, 199
NgoMIV	GCCGGC	1 cut(s)	471
NlaIII	CATG	3 cut(s)	295, 316, 540
NlaIV	GGNNCC	2 cut(s)	201, 433
NmuCI	GTSAC	2 cut(s)	107, 379
PagI	TCATGA	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	1 cut(s)	415
PdiI	GCCGGC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	77
PkrI	GCNGC	1 cut(s)	400
PleI	GAGTC	2 cut(s)	250, 400
PpsI	GAGTC	2 cut(s)	250, 400
Psp6I	CCWGG	2 cut(s)	234, 427
PspGI	CCWGG	2 cut(s)	234, 427
PspN4I	GGNNCC	2 cut(s)	201, 433
PsuI	RGATCY	2 cut(s)	67, 199
RsaI	GTAC	3 cut(s)	25, 233, 512
RsaNI	GTAC	3 cut(s)	24, 232, 511
RseI	CAYNNNNRTG	1 cut(s)	103
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	399
Sau3AI	GATC	3 cut(s)	67, 133, 199
ScaI	AGTACT	1 cut(s)	512
SchI	GAGTC	2 cut(s)	250, 400
ScrFI	CCNGG	2 cut(s)	236, 429
SduI	GDGCHC	1 cut(s)	526
SetI	ASST	5 cut(s)	29, 51, 237, 381, 505
SexAI	ACCWGGT	1 cut(s)	234
SfaNI	GCATC	2 cut(s)	31, 107
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	103
Sse9I	AATT	4 cut(s)	139, 295, 445, 454
SsiI	CCGC	1 cut(s)	197
SspI	AATATT	2 cut(s)	58, 282
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	234, 427
TaaI	ACNGT	1 cut(s)	23
TaiI	ACGT	1 cut(s)	29
TaqI	TCGA	4 cut(s)	75, 304, 409, 515
TasI	AATT	4 cut(s)	139, 295, 445, 454
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	2 cut(s)	107, 379
TseI	GCWGC	1 cut(s)	398
Tsp45I	GTSAC	2 cut(s)	107, 379
TspDTI	ATGAA	3 cut(s)	30, 291, 308
TspRI	CASTG	1 cut(s)	531
VneI	GTGCAC	1 cut(s)	522
XapI	RAATTY	1 cut(s)	454
XspI	CTAG	1 cut(s)	204
ZrmI	AGTACT	1 cut(s)	512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.