MD11G1066400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0016046
Physical Location & Seq
Reverse (-)
5713307 .. 5713732
426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1066400.v1.1.491

Sequence Viewer

Length: 369 bp
ATGGTGACAGAAGCAGCAGCATGGGCACCTGCCATGGCTCCTACGGCTTCTTCTCCACAAGACCAAGACGGGATTCGCTTCTTGCTCGACAGGCACTACGCCTTGCATGGAGAGGTCATGATGGTGGTTGTGATTCTTCTGTTTGCTGCCTTCATTTTCTGCCTTCTCGTGTTTCCCTGTCTCCGGCGAGCGAAGAATCGTCATCTGCGATCTTCACTCGATGAAGACTCCGACGTCGTTGGGAAGCCGAGTAGTTGTTTTTCATCATGGTTTATGAAAAGGAGGACAGATGGAGATGGTGCAAGCTCAACAGAGTTGTCATTGAGGAGGTATATTAACAGTGAAGTTACAAGAAACCCTAGTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.63

Weight (kDa)

7.77

Isoelectric Point (pI)

78.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 37
AasI GACNNNNNNGTC 1 cut(s) 233
AatII GACGTC 1 cut(s) 237
Acc36I ACCTGC 1 cut(s) 37
AccB1I GGYRCC 1 cut(s) 25
AcyI GRCGYC 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 57, 89
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw26I GTCTC 1 cut(s) 185
ApeKI GCWGC 3 cut(s) 14, 17, 146
AsuHPI GGTGA 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 28
BanI GGYRCC 1 cut(s) 25
BauI CACGAG 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 26, 29, 133
BccI CCATC 3 cut(s) 115, 284, 290
BceAI ACGGC 1 cut(s) 60
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 37
BisI GCNGC 3 cut(s) 15, 18, 147
BlsI GCNGC 3 cut(s) 16, 19, 148
BmiI GGNNCC 2 cut(s) 27, 39
BpiI GAAGAC 1 cut(s) 231
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 183
BseRI GAGGAG 1 cut(s) 340
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 3 cut(s) 26, 29, 133
BshNI GGYRCC 1 cut(s) 25
BsiSI CCGG 1 cut(s) 184
BslI CCNNNNNNNGG 1 cut(s) 183
BsmAI GTCTC 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 209
Bsp19I CCATGG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 117
BspLI GGNNCC 2 cut(s) 27, 39
BspMI ACCTGC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 33
BssMI GATC 1 cut(s) 209
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 1 cut(s) 167
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 167
Bst4CI ACNGT 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 189, 304
BstDSI CCRYGG 1 cut(s) 33
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 3 cut(s) 23, 44, 91
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 3 cut(s) 26, 29, 133
BstV2I GAAGAC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 346
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 2 cut(s) 189, 304
CciI TCATGA 1 cut(s) 117
CviAII CATG 5 cut(s) 21, 34, 107, 118, 267
CviJI RGCY 4 cut(s) 38, 47, 247, 306
CviKI_1 RGCY 4 cut(s) 38, 47, 247, 306
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 33
ErhI CCWWGG 1 cut(s) 33
FaeI CATG 5 cut(s) 24, 37, 110, 121, 270
FaiI YATR 7 cut(s) 22, 35, 108, 119, 268, 275, 333
FatI CATG 5 cut(s) 20, 33, 106, 117, 266
Fnu4HI GCNGC 3 cut(s) 15, 18, 147
Fsp4HI GCNGC 3 cut(s) 15, 18, 147
FspBI CTAG 1 cut(s) 360
GluI GCNGC 3 cut(s) 15, 18, 147
HapII CCGG 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 5 cut(s) 24, 37, 110, 121, 270
HinfI GANTC 4 cut(s) 73, 133, 196, 227
HpaII CCGG 1 cut(s) 184
HphI GGTGA 1 cut(s) 16
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 1 cut(s) 118
Hpy99I CGWCG 2 cut(s) 236, 239
HpyAV CCTTC 2 cut(s) 160, 173
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 106, 302
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 44, 91
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 5 cut(s) 24, 37, 110, 121, 270
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 4 cut(s) 42, 76, 190, 197
Lsp1109I GCAGC 3 cut(s) 26, 29, 133
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 4, 346
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 5 cut(s) 42, 128, 204, 205, 236
MhlI GDGCHC 1 cut(s) 28
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 4 cut(s) 106, 276, 318, 321
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 122
MspI CCGG 1 cut(s) 184
MwoI GCNNNNNNNGC 3 cut(s) 23, 44, 91
NcoI CCATGG 1 cut(s) 33
NdeII GATC 1 cut(s) 209
NlaIII CATG 5 cut(s) 24, 37, 110, 121, 270
NlaIV GGNNCC 2 cut(s) 27, 39
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 117
PaqCI CACCTGC 1 cut(s) 37
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PfeI GAWTC 3 cut(s) 73, 133, 196
PkrI GCNGC 3 cut(s) 16, 19, 148
PleI GAGTC 1 cut(s) 221
PpsI GAGTC 1 cut(s) 221
PspN4I GGNNCC 2 cut(s) 27, 39
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 3 cut(s) 15, 18, 147
Sau3AI GATC 1 cut(s) 209
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 1 cut(s) 28
SetI ASST 5 cut(s) 31, 117, 237, 308, 332
SmiMI CAYNNNNRTG 1 cut(s) 122
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 237
TaqI TCGA 2 cut(s) 87, 219
TfiI GAWTC 3 cut(s) 73, 133, 196
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 346
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 3 cut(s) 14, 17, 146
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 4 cut(s) 142, 237, 252, 290
TspRI CASTG 1 cut(s) 346
XspI CTAG 1 cut(s) 360
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.