Rh5CG504800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0016046
Physical Location & Seq
Forward (+)
70137107 .. 70138356
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG504800.1

Sequence Viewer

Length: 390 bp
ATGATATTAGCTCTGACGGCAACATGGGCAGCAGCAGCAGCACCTCATCACAAATTTCCAGCCATGCCATCAGCACCTGCCATGGCTCCTAATAATCAAGATGAGATTCTGTTCTCGGATGATAAGCACTATGCTTTGCATGGAGAGATCATGTTGGTGGTGCTTATTGTTCTCTTCATCGCTTTCGTCTCCTGCCTTGCCGTGGTCACTCGTATCCGACGAGCTAGGGCAGTCGAGGAGGACTTGGTTTCGAAGAACCTGTGCAACTGTTTTGGATTGCTACGCAGTTTGGTGAGGAAGAAGCGGAACAGAGGAGATGAGGATGCTGCACCAGAAGCTCCACTGAGGGCTAGTAATGAGATACCAGAAAGTCTACCTCATGAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.22

Weight (kDa)

6.96

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016046)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G58570
fragaria_vesca FvH4_3g39160
malus_domestica MD11G1066400.v1.1
prunus_persica Prupe.6G052800_v2.0.a1
pyrus_communis pycom03g05050 pycom11g05620 pycom11g05630
rosa_chinensis RchiOBHm_Chr5g0070601
rosa_laevigata RLG00000036141
rosa_roxburghii Rroxscaffold_1G00010640
rosa_rugosa Rorug05G0407000
rosa_samantha Rh5BG480500 Rh5CG504800 Rh5DG492700
rosa_wichuraiana Rw5G043060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 85
Acc36I ACCTGC 1 cut(s) 85
AccI GTMKAC 1 cut(s) 373
AciI CCGC 1 cut(s) 304
AcsI RAATTY 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 202
AluBI AGCT 3 cut(s) 11, 224, 338
AluI AGCT 3 cut(s) 11, 224, 338
Alw26I GTCTC 1 cut(s) 193
AlwNI CAGNNNCTG 1 cut(s) 77
ApeKI GCWGC 5 cut(s) 29, 32, 35, 38, 326
ApoI RAATTY 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 251
BbvI GCAGC 5 cut(s) 41, 44, 47, 50, 313
BccI CCATC 1 cut(s) 76
BceAI ACGGC 2 cut(s) 33, 185
BciVI GTATCC 1 cut(s) 224
BcoDI GTCTC 1 cut(s) 193
BfaI CTAG 2 cut(s) 225, 351
BfuAI ACCTGC 1 cut(s) 85
BfuI GTATCC 1 cut(s) 224
BisI GCNGC 5 cut(s) 30, 33, 36, 39, 327
BlsI GCNGC 5 cut(s) 31, 34, 37, 40, 328
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 251
BsaJI CCNNGG 2 cut(s) 81, 201
Bsc4I CCNNNNNNNGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 81, 201
BseGI GGATG 2 cut(s) 124, 328
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 335
BseRI GAGGAG 2 cut(s) 251, 327
BseXI GCAGC 5 cut(s) 41, 44, 47, 50, 313
BsgI GTGCAG 1 cut(s) 312
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 193
BsmBI CGTCTC 1 cut(s) 193
Bsp119I TTCGAA 1 cut(s) 251
Bsp143I GATC 1 cut(s) 147
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 336
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 1 cut(s) 87
BspMI ACCTGC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 251
BssECI CCNNGG 2 cut(s) 81, 201
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 81
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 179
BstBI TTCGAA 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 344
BstDSI CCRYGG 2 cut(s) 81, 201
BstF5I GGATG 2 cut(s) 124, 328
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 193
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 335
BstV1I GCAGC 5 cut(s) 41, 44, 47, 50, 313
BsuI GTATCC 1 cut(s) 224
BtgI CCRYGG 2 cut(s) 81, 201
BtgZI GCGATG 1 cut(s) 163
BtsCI GGATG 2 cut(s) 124, 328
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 379
CviAII CATG 6 cut(s) 24, 64, 82, 140, 151, 380
CviJI RGCY 6 cut(s) 11, 62, 86, 224, 338, 350
CviKI_1 RGCY 6 cut(s) 11, 62, 86, 224, 338, 350
DdeI CTNAG 1 cut(s) 344
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 81
EcoT14I CCWWGG 1 cut(s) 81
ErhI CCWWGG 1 cut(s) 81
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 6 cut(s) 27, 67, 85, 143, 154, 383
FaiI YATR 7 cut(s) 25, 65, 83, 132, 141, 152, 381
FatI CATG 6 cut(s) 23, 63, 81, 139, 150, 379
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 5 cut(s) 30, 33, 36, 39, 327
FokI GGATG 2 cut(s) 131, 335
Fsp4HI GCNGC 5 cut(s) 30, 33, 36, 39, 327
FspBI CTAG 2 cut(s) 225, 351
GluI GCNGC 5 cut(s) 30, 33, 36, 39, 327
Hin1II CATG 6 cut(s) 27, 67, 85, 143, 154, 383
HinfI GANTC 1 cut(s) 106
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 374
Hpy188I TCNGA 3 cut(s) 15, 118, 218
Hpy188III TCNNGA 2 cut(s) 98, 380
Hpy8I GTNNAC 1 cut(s) 374
Hpy99I CGWCG 1 cut(s) 222
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4V TGCA 3 cut(s) 139, 264, 329
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 335
HpyF3I CTNAG 1 cut(s) 344
Hsp92II CATG 6 cut(s) 27, 67, 85, 143, 154, 383
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 2 cut(s) 91, 343
LpnPI CCDG 6 cut(s) 72, 90, 205, 272, 345, 378
Lsp1109I GCAGC 5 cut(s) 41, 44, 47, 50, 313
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 225, 351
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 3 cut(s) 166, 265, 310
MluCI AATT 1 cut(s) 53
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 8 cut(s) 54, 229, 232, 288, 305, 313, 339, 387
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 5 cut(s) 17, 26, 35, 38, 335
NcoI CCATGG 1 cut(s) 81
NdeII GATC 1 cut(s) 147
NlaIII CATG 6 cut(s) 27, 67, 85, 143, 154, 383
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 205
NspV TTCGAA 1 cut(s) 251
PagI TCATGA 1 cut(s) 379
PaqCI CACCTGC 1 cut(s) 85
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 5 cut(s) 31, 34, 37, 40, 328
PspN4I GGNNCC 1 cut(s) 87
PstNI CAGNNNCTG 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 5 cut(s) 30, 33, 36, 39, 327
Sau3AI GATC 1 cut(s) 147
SetI ASST 7 cut(s) 13, 46, 79, 226, 261, 340, 379
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 1 cut(s) 53
SsiI CCGC 1 cut(s) 304
SspMI CTAG 2 cut(s) 225, 351
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 269
TaqI TCGA 2 cut(s) 234, 251
TasI AATT 1 cut(s) 53
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 5 cut(s) 29, 32, 35, 38, 326
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 1 cut(s) 166
TspRI CASTG 1 cut(s) 348
XapI RAATTY 1 cut(s) 53
XmiI GTMKAC 1 cut(s) 373
XspI CTAG 2 cut(s) 225, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.