FvH4_3g40511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015586
Physical Location & Seq
Reverse (-)
34174487 .. 34176479
1993 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40511.t1

Sequence Viewer

Length: 1038 bp
ATGGGGGACAGGGACAAGGCAACATTGGCAAAGGCAAGAAAGGAGCTTGAAGACATGTATGAAGGCATACCAGATGACTCGGTGAACCTCACTTTCCAAGACTTTGCAGACCTTAGTATAAGCACTACTGCAGACAAGCCGAGAAAACCCACTCACAGTTTGGATCCCATTTCCGAACTCAAGTCCTCCACAAACCCCATGGCCAGACTTCCCAGCCTCGATTTCAACAGAGCCTTGCAAGCATCCAAGCACAACCACCGCATCAACGAAGAGGTAGCTGACACTTACAGAGGTAACAACCACCATCATCATCTTCAACACCAAAATAATCACCACCACCTCGACGTCAACAGCCACCGCGGCCATGCAGGCCACGATGGCCATCGATACAGTGGTGGTGGTCATCATAGTGATCATCACCAAGGCCATAACTTTAATCATCATATGATGAGTGGTCATGGAGGAGTAGAGATGAGTAGCATAAGCATGGCTAGTACTACTTATGATCATCATGATATGAGCGGCGTAAGCATGGCTTCGACTGCCATGCACCAGCAAGATAGAAGTGGAAGACGAAGGCCTGGGATTCCTCACTCCAATATCTGCACCATCTGTAGTACCTACATCTATATTTTCCGCCATCGCTGCCTGGTCTGTGGAAGAGTGTATTGCAGGCAATGCGTGATGGTAGGGATGGGAGAAATGACCGAAGGTAGAAAATGCATCCAGTGTCTAGGGAGGCGATTTAGCCAAAGGTACATACAAAGAGCAGGAAAGGTTGGATGTTGGTCAAGGTACCCTAGCGAGGTGAAGCAAGCAGAGCTCAAGTGGGCCGAGAAAGGGCCAAGAAGAAATGATGTAAATGGGCGTTACGGTCGCAGCACCGTGCGAACACCCAGATCAAGGAGCCCAGTAACTCCAAGAACTCCACGAACCCCAATCAGGGGACATGTTCCTTCAAGTCCTGGCCCAAATTCCTTTGTCACCAGTTCCTCATATTCTCCTTATTCTCCTGCTCACCACCACCTCCCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.97

Weight (kDa)

9.59

Isoelectric Point (pI)

47.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 348
Acc65I GGTACC 1 cut(s) 795
AccB1I GGYRCC 1 cut(s) 795
AccBSI CCGCTC 1 cut(s) 522
AccII CGCG 1 cut(s) 360
AciI CCGC 5 cut(s) 259, 358, 360, 522, 637
AclWI GGATC 2 cut(s) 158, 171
AcoI YGGCCR 3 cut(s) 201, 361, 379
AcsI RAATTY 1 cut(s) 973
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 4 cut(s) 496, 619, 758, 797
AfiI CCNNNNNNNGG 6 cut(s) 805, 840, 903, 942, 943, 944
AflIII ACRYGT 2 cut(s) 54, 949
AgsI TTSAA 4 cut(s) 50, 226, 317, 960
AjnI CCWGG 3 cut(s) 580, 648, 964
AluBI AGCT 3 cut(s) 46, 278, 823
AluI AGCT 3 cut(s) 46, 278, 823
Alw21I GWGCWC 1 cut(s) 825
AlwI GGATC 2 cut(s) 158, 171
AoxI GGCC 9 cut(s) 201, 361, 370, 379, 424, 578, 831, 842, 967
ApeKI GCWGC 2 cut(s) 645, 879
ApoI RAATTY 1 cut(s) 973
Asp718I GGTACC 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 831, 842, 968
AsuHPI GGTGA 6 cut(s) 94, 323, 410, 820, 976, 1010
BaeI ACNNNNGTAYC 2 cut(s) 379, 412
BalI TGGCCA 2 cut(s) 203, 381
BamHI GGATCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 795
BanII GRGCYC 2 cut(s) 825, 911
BbsI GAAGAC 2 cut(s) 57, 577
Bbv12I GWGCWC 1 cut(s) 825
BbvI GCAGC 2 cut(s) 632, 891
BccI CCATC 7 cut(s) 312, 371, 390, 617, 648, 679, 688
BcgI CGANNNNNNTGC 2 cut(s) 529, 563
BciT130I CCWGG 3 cut(s) 582, 650, 966
BclI TGATCA 2 cut(s) 412, 505
BfaI CTAG 4 cut(s) 492, 734, 801, 1036
BfmI CTRYAG 2 cut(s) 129, 613
BglI GCCNNNNNGGC 3 cut(s) 360, 369, 378
BisI GCNGC 4 cut(s) 361, 523, 646, 880
BlsI GCNGC 4 cut(s) 362, 524, 647, 881
BmcAI AGTACT 1 cut(s) 496
Bme1390I CCNGG 3 cut(s) 582, 650, 966
BmgT120I GGNCC 3 cut(s) 831, 842, 968
BmiI GGNNCC 3 cut(s) 165, 797, 908
BmrFI CCNGG 3 cut(s) 582, 650, 966
BmrI ACTGGG 1 cut(s) 905
BmsI GCATC 3 cut(s) 251, 270, 732
BmuI ACTGGG 1 cut(s) 905
BpiI GAAGAC 2 cut(s) 57, 577
BpuEI CTTGAG 2 cut(s) 164, 809
Bsa29I ATCGAT 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 381
BsaHI GRCGYC 1 cut(s) 345
BsaJI CCNNGG 4 cut(s) 198, 358, 421, 581
Bsc4I CCNNNNNNNGG 6 cut(s) 805, 840, 903, 942, 943, 944
Bse1I ACTGG 3 cut(s) 727, 911, 987
Bse3DI GCAATG 1 cut(s) 683
Bse8I GATNNNNATC 1 cut(s) 381
BseBI CCWGG 3 cut(s) 582, 650, 966
BseCI ATCGAT 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 198, 358, 421, 581
BseGI GGATG 4 cut(s) 242, 699, 723, 788
BseJI GATNNNNATC 1 cut(s) 381
BseLI CCNNNNNNNGG 6 cut(s) 805, 840, 903, 942, 943, 944
BseMI GCAATG 1 cut(s) 683
BseNI ACTGG 3 cut(s) 727, 911, 987
BseRI GAGGAG 1 cut(s) 477
BseXI GCAGC 2 cut(s) 632, 891
BseYI CCCAGC 1 cut(s) 212
BsgI GTGCAG 1 cut(s) 589
Bsh1236I CGCG 1 cut(s) 360
Bsh1285I CGRYCG 1 cut(s) 877
BshFI GGCC 9 cut(s) 203, 363, 372, 381, 426, 580, 833, 844, 969
BshNI GGYRCC 1 cut(s) 795
BshVI ATCGAT 1 cut(s) 385
BsiEI CGRYCG 1 cut(s) 877
BsiHKAI GWGCWC 1 cut(s) 825
BslFI GGGAC 3 cut(s) 20, 26, 960
BslI CCNNNNNNNGG 6 cut(s) 805, 840, 903, 942, 943, 944
BsmFI GGGAC 3 cut(s) 20, 26, 960
BsnI GGCC 9 cut(s) 203, 363, 372, 381, 426, 580, 833, 844, 969
Bsp1286I GDGCHC 2 cut(s) 825, 911
Bsp143I GATC 4 cut(s) 163, 412, 505, 899
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 5 cut(s) 259, 358, 360, 522, 637
BspANI GGCC 9 cut(s) 203, 363, 372, 381, 426, 580, 833, 844, 969
BspDI ATCGAT 1 cut(s) 385
BspFNI CGCG 1 cut(s) 360
BspHI TCATGA 1 cut(s) 511
BspLI GGNNCC 3 cut(s) 165, 797, 908
BspMAI CTGCAG 1 cut(s) 133
BspPI GGATC 2 cut(s) 158, 171
BspT107I GGYRCC 1 cut(s) 795
BsrBI CCGCTC 1 cut(s) 522
BsrDI GCAATG 1 cut(s) 683
BsrI ACTGG 3 cut(s) 727, 911, 987
BssECI CCNNGG 4 cut(s) 198, 358, 421, 581
BssMI GATC 4 cut(s) 163, 412, 505, 899
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 198, 421
Bst2UI CCWGG 3 cut(s) 582, 650, 966
Bst4CI ACNGT 4 cut(s) 158, 392, 875, 886
Bst6I CTCTTC 2 cut(s) 264, 655
BstACI GRCGYC 1 cut(s) 345
BstAPI GCANNNNNTGC 1 cut(s) 678
BstC8I GCNNGC 4 cut(s) 240, 370, 674, 816
BstDEI CTNAG 1 cut(s) 113
BstDSI CCRYGG 2 cut(s) 198, 358
BstF5I GGATG 4 cut(s) 242, 699, 723, 788
BstFNI CGCG 1 cut(s) 360
BstKTI GATC 4 cut(s) 166, 415, 508, 902
BstMBI GATC 4 cut(s) 163, 412, 505, 899
BstMCI CGRYCG 1 cut(s) 877
BstNI CCWGG 3 cut(s) 582, 650, 966
BstNSI RCATGY 2 cut(s) 58, 953
BstSCI CCNGG 3 cut(s) 580, 648, 964
BstSFI CTRYAG 2 cut(s) 129, 613
BstUI CGCG 1 cut(s) 360
BstV1I GCAGC 2 cut(s) 632, 891
BstV2I GAAGAC 2 cut(s) 57, 577
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 385
BsuRI GGCC 9 cut(s) 203, 363, 372, 381, 426, 580, 833, 844, 969
BsuTUI ATCGAT 1 cut(s) 385
BtgI CCRYGG 2 cut(s) 198, 358
BtgZI GCGATG 1 cut(s) 626
BtsCI GGATG 4 cut(s) 242, 699, 723, 788
BtsIMutI CAGTG 2 cut(s) 397, 734
Cac8I GCNNGC 4 cut(s) 240, 370, 674, 816
CciI TCATGA 1 cut(s) 511
Cfr13I GGNCC 3 cut(s) 831, 842, 968
Cfr42I CCGCGG 1 cut(s) 361
ClaI ATCGAT 1 cut(s) 385
Csp6I GTAC 4 cut(s) 495, 618, 757, 796
CviAII CATG 9 cut(s) 55, 199, 365, 458, 487, 512, 532, 547, 950
CviQI GTAC 4 cut(s) 495, 618, 757, 796
DdeI CTNAG 1 cut(s) 113
DpnI GATC 4 cut(s) 165, 414, 507, 901
DpnII GATC 4 cut(s) 163, 412, 505, 899
EaeI YGGCCR 3 cut(s) 201, 361, 379
Eam1104I CTCTTC 2 cut(s) 264, 655
EarI CTCTTC 2 cut(s) 264, 655
EciI GGCGGA 1 cut(s) 626
Ecl136II GAGCTC 1 cut(s) 823
Eco130I CCWWGG 2 cut(s) 198, 421
Eco147I AGGCCT 1 cut(s) 580
Eco24I GRGCYC 2 cut(s) 825, 911
Eco53kI GAGCTC 1 cut(s) 823
EcoICRI GAGCTC 1 cut(s) 823
EcoRII CCWGG 3 cut(s) 580, 648, 964
EcoT14I CCWWGG 2 cut(s) 198, 421
EcoT22I ATGCAT 1 cut(s) 725
EcoT38I GRGCYC 2 cut(s) 825, 911
ErhI CCWWGG 2 cut(s) 198, 421
FaeI CATG 9 cut(s) 58, 202, 368, 461, 490, 515, 535, 550, 953
FalI AAGNNNNNCTT 2 cut(s) 520, 552
FaqI GGGAC 3 cut(s) 20, 26, 960
FatI CATG 9 cut(s) 54, 198, 364, 457, 486, 511, 531, 546, 949
FauNDI CATATG 1 cut(s) 444
FbaI TGATCA 2 cut(s) 412, 505
Fnu4HI GCNGC 4 cut(s) 361, 523, 646, 880
FokI GGATG 4 cut(s) 229, 706, 710, 795
FriOI GRGCYC 2 cut(s) 825, 911
Fsp4HI GCNGC 4 cut(s) 361, 523, 646, 880
FspBI CTAG 4 cut(s) 492, 734, 801, 1036
GluI GCNGC 4 cut(s) 361, 523, 646, 880
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 9 cut(s) 203, 363, 372, 381, 426, 580, 833, 844, 969
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 9 cut(s) 58, 202, 368, 461, 490, 515, 535, 550, 953
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 2 cut(s) 77, 586
HphI GGTGA 6 cut(s) 94, 323, 410, 820, 976, 1010
Hpy166II GTNNAC 2 cut(s) 85, 349
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 1 cut(s) 512
Hpy8I GTNNAC 2 cut(s) 85, 349
Hpy99I CGWCG 1 cut(s) 347
HpyAV CCTTC 4 cut(s) 56, 570, 704, 966
HpyCH4III ACNGT 4 cut(s) 158, 392, 875, 886
HpyCH4IV ACGT 1 cut(s) 345
HpyCH4V TGCA 8 cut(s) 107, 131, 238, 368, 550, 606, 672, 723
HpyF3I CTNAG 1 cut(s) 113
HpySE526I ACGT 1 cut(s) 345
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 9 cut(s) 58, 202, 368, 461, 490, 515, 535, 550, 953
KpnI GGTACC 1 cut(s) 799
Ksp22I TGATCA 2 cut(s) 412, 505
KspI CCGCGG 1 cut(s) 361
Kzo9I GATC 4 cut(s) 163, 412, 505, 899
LmnI GCTCC 2 cut(s) 43, 906
Lsp1109I GCAGC 2 cut(s) 632, 891
LweI GCATC 3 cut(s) 251, 270, 732
MaeI CTAG 4 cut(s) 492, 734, 801, 1036
MaeII ACGT 1 cut(s) 345
MaeIII GTNAC 4 cut(s) 293, 869, 913, 982
MalI GATC 4 cut(s) 165, 414, 507, 901
MbiI CCGCTC 1 cut(s) 522
MboI GATC 4 cut(s) 163, 412, 505, 899
MboII GAAGA 6 cut(s) 62, 281, 305, 582, 672, 861
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 825, 911
MlsI TGGCCA 2 cut(s) 203, 381
MluCI AATT 1 cut(s) 973
MluNI TGGCCA 2 cut(s) 203, 381
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 760
Mox20I TGGCCA 2 cut(s) 203, 381
Mph1103I ATGCAT 1 cut(s) 725
MscI TGGCCA 2 cut(s) 203, 381
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 2 cut(s) 408, 485
Msp20I TGGCCA 2 cut(s) 203, 381
MspA1I CMGCKG 1 cut(s) 360
MspR9I CCNGG 3 cut(s) 582, 650, 966
MvaI CCWGG 3 cut(s) 582, 650, 966
MvnI CGCG 1 cut(s) 360
NcoI CCATGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 444
NdeII GATC 4 cut(s) 163, 412, 505, 899
NlaIII CATG 9 cut(s) 58, 202, 368, 461, 490, 515, 535, 550, 953
NlaIV GGNNCC 3 cut(s) 165, 797, 908
NmeAIII GCCGAG 2 cut(s) 165, 859
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 725
NspI RCATGY 2 cut(s) 58, 953
PagI TCATGA 1 cut(s) 511
PceI AGGCCT 1 cut(s) 580
PciI ACATGT 2 cut(s) 54, 949
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 4 cut(s) 362, 524, 647, 881
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PscI ACATGT 2 cut(s) 54, 949
Psp124BI GAGCTC 1 cut(s) 825
Psp6I CCWGG 3 cut(s) 580, 648, 964
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 3 cut(s) 580, 648, 964
PspN4I GGNNCC 3 cut(s) 165, 797, 908
PspPI GGNCC 3 cut(s) 831, 842, 968
PstI CTGCAG 1 cut(s) 133
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 4 cut(s) 496, 619, 758, 797
RsaNI GTAC 4 cut(s) 495, 618, 757, 796
RseI CAYNNNNRTG 2 cut(s) 408, 485
SacI GAGCTC 1 cut(s) 825
SacII CCGCGG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 4 cut(s) 361, 523, 646, 880
Sau3AI GATC 4 cut(s) 163, 412, 505, 899
Sau96I GGNCC 3 cut(s) 831, 842, 968
ScaI AGTACT 1 cut(s) 496
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 3 cut(s) 582, 650, 966
SduI GDGCHC 2 cut(s) 825, 911
SfaNI GCATC 3 cut(s) 251, 270, 732
SfcI CTRYAG 2 cut(s) 129, 613
SfiI GGCCNNNNNGGCC 2 cut(s) 369, 378
Sfr303I CCGCGG 1 cut(s) 361
SgrBI CCGCGG 1 cut(s) 361
SmiMI CAYNNNNRTG 2 cut(s) 408, 485
SmlI CTYRAG 2 cut(s) 179, 824
SmoI CTYRAG 2 cut(s) 179, 824
Sse9I AATT 1 cut(s) 973
SseBI AGGCCT 1 cut(s) 580
SsiI CCGC 5 cut(s) 259, 358, 360, 522, 637
SspMI CTAG 4 cut(s) 492, 734, 801, 1036
SstI GAGCTC 1 cut(s) 825
StuI AGGCCT 1 cut(s) 580
StyD4I CCNGG 3 cut(s) 580, 648, 964
StyI CCWWGG 2 cut(s) 198, 421
TaaI ACNGT 4 cut(s) 158, 392, 875, 886
TaiI ACGT 1 cut(s) 348
TaqI TCGA 4 cut(s) 219, 342, 385, 539
TaqII GACCGA 1 cut(s) 722
TasI AATT 1 cut(s) 973
TatI WGTACW 1 cut(s) 494
TauI GCSGC 2 cut(s) 363, 525
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 2 cut(s) 397, 734
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 2 cut(s) 645, 879
Tsp45I GTSAC 1 cut(s) 982
TspDTI ATGAA 1 cut(s) 75
TspRI CASTG 2 cut(s) 397, 734
XapI RAATTY 1 cut(s) 973
XceI RCATGY 2 cut(s) 58, 953
XcmI CCANNNNNNNNNTGG 3 cut(s) 157, 196, 389
XspI CTAG 4 cut(s) 492, 734, 801, 1036
ZraI GACGTC 1 cut(s) 346
ZrmI AGTACT 1 cut(s) 496
Zsp2I ATGCAT 1 cut(s) 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.