Rw5G044510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015586
Physical Location & Seq
Reverse (-)
78170387 .. 78171046
660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044510.1

Sequence Viewer

Length: 660 bp
ATGGGGGACAAGGCAACATTAGCAAAGGCAAGAAAGGAGCTTGAAGATATGTATGAAGGCATACCAGATGACTCAGTGAACCTCACTTTCCAAGACTTTGCAGACCTCAGTATAAGCACTACTGCAGACAAGAGAAAACCCACTCACGCTTTGGAATCCATTTCCGAACTCAAGTCCCCGAACCCCATGGCCAGACTTCCCAGCCTCGATTTCAACAGAGCCTTGCAAGCATCCAAGAACAACCACCGCATCAACGAAGACGTTGTTGACCCCTACAGAGGTAATCACCATCATCTTCATCACCAGAACAATCACTACCACCTCAGCGCTAACAGTCACCACGGCCATGCAGGCCAGGGAGGCCATCGATACGGTGGTGGCGATCATCATGGTGATCACCAAGGCCATAACTTTAATCATCATATGATGAGTGGTCATGGAGGAGTGGAGATGAGTAGCATAAGCATGGCTACTAGTACTACTTATGATCATCATGATGTGAGCGGCGTAAGCATGGATTCGACTGCCGTGCACCAGCAAGATAGAGGTGGAAGGCGAAGGCCTGGGGTTCCTCACTCCAATATCTGCACCATTTGTAGTACCTACATCTATATTTTCCGCCATCGCTGCCTGGTACATATTCGAACAAACACAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.44

Weight (kDa)

6.96

Isoelectric Point (pI)

42.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 504
AciI CCGC 3 cut(s) 247, 504, 619
AcoI YGGCCR 2 cut(s) 189, 343
AfaI GTAC 3 cut(s) 478, 601, 636
AfeI AGCGCT 1 cut(s) 328
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 2 cut(s) 44, 214
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 3 cut(s) 354, 562, 630
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 530
Aor51HI AGCGCT 1 cut(s) 328
AoxI GGCC 6 cut(s) 189, 343, 352, 361, 403, 560
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 329
AsuHPI GGTGA 5 cut(s) 278, 293, 329, 389, 404
AsuII TTCGAA 1 cut(s) 643
BaeGI GKGCMC 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BalI TGGCCA 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 534
BbvCI CCTCAGC 1 cut(s) 323
BbvI GCAGC 1 cut(s) 614
BccI CCATC 3 cut(s) 297, 372, 630
BceAI ACGGC 2 cut(s) 358, 512
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 3 cut(s) 356, 564, 632
BclI TGATCA 2 cut(s) 394, 487
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 1 cut(s) 474
BfmI CTRYAG 2 cut(s) 123, 274
BfoI RGCGCY 1 cut(s) 330
BglI GCCNNNNNGGC 2 cut(s) 351, 360
BisI GCNGC 2 cut(s) 505, 628
BlsI GCNGC 2 cut(s) 506, 629
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 356, 564, 632
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 356, 564, 632
BmsI GCATC 2 cut(s) 239, 258
BpiI GAAGAC 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 643
BpuEI CTTGAG 1 cut(s) 155
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 278
BseBI CCWGG 3 cut(s) 356, 564, 632
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
BseGI GGATG 1 cut(s) 230
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 3 cut(s) 87, 121, 337
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 614
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 571
BshFI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 534
BslFI GGGAC 2 cut(s) 20, 160
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 20, 160
BsnI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
Bsp119I TTCGAA 1 cut(s) 643
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 382, 394, 487
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 247, 504, 619
BspANI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BspCNI CTCAG 3 cut(s) 86, 120, 336
BspDI ATCGAT 1 cut(s) 367
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 127
BspT104I TTCGAA 1 cut(s) 643
BsrBI CCGCTC 1 cut(s) 504
BssECI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
BssMI GATC 3 cut(s) 382, 394, 487
BssT1I CCWWGG 2 cut(s) 186, 400
Bst2UI CCWGG 3 cut(s) 356, 564, 632
Bst4CI ACNGT 2 cut(s) 335, 374
BstBI TTCGAA 1 cut(s) 643
BstC8I GCNNGC 2 cut(s) 228, 352
BstDEI CTNAG 3 cut(s) 73, 107, 323
BstDSI CCRYGG 2 cut(s) 186, 340
BstF5I GGATG 1 cut(s) 230
BstH2I RGCGCY 1 cut(s) 330
BstHHI GCGC 1 cut(s) 329
BstKTI GATC 3 cut(s) 385, 397, 490
BstMBI GATC 3 cut(s) 382, 394, 487
BstMWI GCNNNNNNNGC 6 cut(s) 20, 227, 351, 360, 510, 627
BstNI CCWGG 3 cut(s) 356, 564, 632
BstSCI CCNGG 3 cut(s) 354, 562, 630
BstSFI CTRYAG 2 cut(s) 123, 274
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 367
BsuRI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 2 cut(s) 186, 340
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 1 cut(s) 230
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 228, 352
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 329
ClaI ATCGAT 1 cut(s) 367
Csp6I GTAC 3 cut(s) 477, 600, 635
CviAII CATG 7 cut(s) 187, 347, 389, 437, 466, 494, 514
CviQI GTAC 3 cut(s) 477, 600, 635
DdeI CTNAG 3 cut(s) 73, 107, 323
DpnI GATC 3 cut(s) 384, 396, 489
DpnII GATC 3 cut(s) 382, 394, 487
EaeI YGGCCR 2 cut(s) 189, 343
EciI GGCGGA 1 cut(s) 608
Eco130I CCWWGG 2 cut(s) 186, 400
Eco147I AGGCCT 1 cut(s) 562
Eco47III AGCGCT 1 cut(s) 328
EcoRII CCWGG 3 cut(s) 354, 562, 630
EcoT14I CCWWGG 2 cut(s) 186, 400
ErhI CCWWGG 2 cut(s) 186, 400
FaeI CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
FaqI GGGAC 2 cut(s) 20, 160
FatI CATG 7 cut(s) 186, 346, 388, 436, 465, 493, 513
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 2 cut(s) 394, 487
Fnu4HI GCNGC 2 cut(s) 505, 628
FokI GGATG 1 cut(s) 217
Fsp4HI GCNGC 2 cut(s) 505, 628
FspBI CTAG 1 cut(s) 474
GlaI GCGC 1 cut(s) 328
GluI GCNGC 2 cut(s) 505, 628
GsaI CCCAGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 330
HaeIII GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
HhaI GCGC 1 cut(s) 329
Hin1II CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
Hin6I GCGC 1 cut(s) 327
HinP1I GCGC 1 cut(s) 327
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 3 cut(s) 71, 155, 518
HphI GGTGA 5 cut(s) 278, 293, 329, 389, 404
Hpy166II GTNNAC 3 cut(s) 79, 268, 532
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 3 cut(s) 79, 268, 532
HpyAV CCTTC 3 cut(s) 50, 546, 552
HpyCH4III ACNGT 2 cut(s) 335, 374
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 6 cut(s) 101, 125, 226, 350, 532, 588
HpyF10VI GCNNNNNNNGC 6 cut(s) 20, 227, 351, 360, 510, 627
HpyF3I CTNAG 3 cut(s) 73, 107, 323
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
HspAI GCGC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 394, 487
Kzo9I GATC 3 cut(s) 382, 394, 487
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 2 cut(s) 239, 258
MaeI CTAG 1 cut(s) 474
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 335
MalI GATC 3 cut(s) 384, 396, 489
MbiI CCGCTC 1 cut(s) 504
MboI GATC 3 cut(s) 382, 394, 487
MboII GAAGA 3 cut(s) 56, 269, 287
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 191
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 9 cut(s) 92, 116, 215, 272, 332, 353, 434, 539, 582
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 4 cut(s) 345, 390, 464, 495
Msp20I TGGCCA 1 cut(s) 191
MspR9I CCNGG 3 cut(s) 356, 564, 632
MvaI CCWGG 3 cut(s) 356, 564, 632
MwoI GCNNNNNNNGC 6 cut(s) 20, 227, 351, 360, 510, 627
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 423
NdeII GATC 3 cut(s) 382, 394, 487
NlaIII CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 335
NspV TTCGAA 1 cut(s) 643
PagI TCATGA 1 cut(s) 493
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 2 cut(s) 155, 518
PkrI GCNGC 2 cut(s) 506, 629
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 354, 562, 630
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 3 cut(s) 354, 562, 630
PspN4I GGNNCC 1 cut(s) 570
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 3 cut(s) 478, 601, 636
RsaNI GTAC 3 cut(s) 477, 600, 635
RseI CAYNNNNRTG 4 cut(s) 345, 390, 464, 495
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 2 cut(s) 505, 628
Sau3AI GATC 3 cut(s) 382, 394, 487
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 356, 564, 632
SduI GDGCHC 1 cut(s) 534
SetI ASST 8 cut(s) 42, 84, 108, 264, 283, 324, 550, 605
SfaNI GCATC 2 cut(s) 239, 258
SfcI CTRYAG 2 cut(s) 123, 274
SfiI GGCCNNNNNGGCC 2 cut(s) 351, 360
SfuI TTCGAA 1 cut(s) 643
SmiMI CAYNNNNRTG 4 cut(s) 345, 390, 464, 495
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
SpeI ACTAGT 1 cut(s) 473
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 3 cut(s) 247, 504, 619
SspMI CTAG 1 cut(s) 474
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 354, 562, 630
StyI CCWWGG 2 cut(s) 186, 400
TaaI ACNGT 2 cut(s) 335, 374
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 207, 367, 521, 643
TatI WGTACW 1 cut(s) 476
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 2 cut(s) 155, 518
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 69, 287
TspRI CASTG 1 cut(s) 81
VneI GTGCAC 1 cut(s) 530
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 371
XspI CTAG 1 cut(s) 474
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.