Prupe.6G041100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015586
Physical Location & Seq
Forward (+)
3050415 .. 3052390
1976 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G041100.1

Sequence Viewer

Length: 1086 bp
ATGGGGGACAAGGCAACATTGGCAAAGGCAAGAATGGAGCTTGAAGACATGTATCAAGGGATACCAGATGAGTCAGTCAACCTCACTTTCCAAGACTTTGCAGAGCTCCAACTAAACCGAATCGCATCATCCGAAAAGAAAAAACCAAACCCAATATTATTGGATCCCATTTCTAAGCTCAAATATACCACACAACCCTCCTCCCCCTCTCCTTTGACCAAACTCCCAAGCCTTGACTTCAACAGAGCCCTGCAGGCATCCAACATTAACCACAGCCACCACCATGTTGACCATGCAGGTCCATATGGAGGTCATGTCAATCATCATCTTGATCATCACCAGATGAACAGCCATCATGACCTCGGACATGATCATGGCATGCACCATGGCCATGCATCTCGAGGGAGTCATGGCCATAACCATGATCAAGGTCATGGTCATGATGGCCATGTCATAAATAATCATCATATGAATAGTCCAACTGGCCCGACATGTCATGCCGGCGGCGGATTGAGGCATGGGTTGGAGACTAGCATGGGGGCTTATGATCATGATGTGAGTGGTATAAGCATGGCTTCCGGCGTGTATAACCGGCAGCAAGACAGAGGAGGACGGAGGAGGCCTGGAATTCCCCACTCGAATATCTGCACTCTTTGCAGCACCTACATCTATATTTTCCGCCACCGTTGCTTGGTTTGTGGAAGAGTGTATTGTAGACAATGTGTGATGTTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCGTTGAATGTTTAGGGAGGCGATTCAGTCAAAGGTACATACAAAGAGCAGGAAAGGTTGGATGTTTTTCAAGGTATCCCCTCATTGTGAAGCAAGCTGAGCTGAAATGGGCTGAGAAAGGGCCAAGAAGGAGCGGCGGCAACAACGGGGCCTATGGCGGGAGCACGATGATGTCACCGAGATCACGAAGTCCCATGGCCCCGGTGACTCCACGGACCCCAAACACAGCGCATAATACAAGCAGTAGCCCAAATTCTTTTGTCATGAATAGTTCATCCTATTCTCCTTATTCACCAACTCACCGTCACCACCTCCCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

362

Amino Acids

40.02

Weight (kDa)

9.37

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 287
AccBSI CCGCTC 1 cut(s) 897
AccI GTMKAC 1 cut(s) 715
AciI CCGC 6 cut(s) 504, 507, 679, 897, 900, 921
AclWI GGATC 2 cut(s) 158, 171
AcoI YGGCCR 3 cut(s) 388, 412, 445
AcsI RAATTY 2 cut(s) 627, 1015
AfaI GTAC 1 cut(s) 800
AfiI CCNNNNNNNGG 3 cut(s) 308, 691, 921
AflIII ACRYGT 2 cut(s) 48, 491
AgsI TTSAA 4 cut(s) 44, 241, 770, 834
AjnI CCWGG 1 cut(s) 622
AluBI AGCT 5 cut(s) 40, 106, 178, 860, 865
AluI AGCT 5 cut(s) 40, 106, 178, 860, 865
Alw21I GWGCWC 2 cut(s) 108, 929
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 2 cut(s) 158, 171
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 8 cut(s) 388, 412, 445, 484, 620, 884, 912, 960
ApeKI GCWGC 2 cut(s) 595, 657
ApoI RAATTY 2 cut(s) 627, 1015
AspLEI GCGC 1 cut(s) 994
AspS9I GGNCC 6 cut(s) 299, 485, 884, 912, 961, 978
AsuC2I CCSGG 1 cut(s) 965
AsuHPI GGTGA 6 cut(s) 329, 930, 979, 1047, 1055, 1061
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 2 cut(s) 299, 978
BalI TGGCCA 3 cut(s) 390, 414, 447
BamHI GGATCC 1 cut(s) 163
BanII GRGCYC 2 cut(s) 108, 250
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 2 cut(s) 108, 929
BbvI GCAGC 2 cut(s) 607, 669
BccI CCATC 3 cut(s) 360, 437, 730
BciT130I CCWGG 1 cut(s) 624
BciVI GTATCC 2 cut(s) 54, 849
BclI TGATCA 4 cut(s) 331, 370, 424, 547
BcnI CCSGG 1 cut(s) 965
BcoDI GTCTC 1 cut(s) 521
BfaI CTAG 1 cut(s) 531
BfmI CTRYAG 1 cut(s) 251
BfuAI ACCTGC 1 cut(s) 287
BfuI GTATCC 2 cut(s) 54, 849
BglI GCCNNNNNGGC 1 cut(s) 254
BisI GCNGC 5 cut(s) 505, 596, 658, 898, 901
BlpI GCTNAGC 1 cut(s) 861
BlsI GCNGC 5 cut(s) 506, 597, 659, 899, 902
Bme1390I CCNGG 2 cut(s) 624, 965
Bme18I GGWCC 2 cut(s) 299, 978
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 6 cut(s) 299, 485, 884, 912, 961, 978
BmiI GGNNCC 4 cut(s) 165, 913, 963, 980
BmrFI CCNGG 2 cut(s) 624, 965
BmsI GCATC 3 cut(s) 134, 266, 404
BpiI GAAGAC 1 cut(s) 51
Bpu1102I GCTNAGC 1 cut(s) 861
BpuMI CCSGG 1 cut(s) 965
BsaJI CCNNGG 5 cut(s) 361, 385, 957, 963, 974
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 308, 691, 921
Bse118I RCCGGY 2 cut(s) 500, 591
Bse1I ACTGG 1 cut(s) 487
BseBI CCWGG 1 cut(s) 624
BseDI CCNNGG 5 cut(s) 361, 385, 957, 963, 974
BseGI GGATG 5 cut(s) 128, 257, 741, 830, 1037
BseLI CCNNNNNNNGG 3 cut(s) 308, 691, 921
BseMII CTCAG 2 cut(s) 852, 867
BseNI ACTGG 1 cut(s) 487
BseRI GAGGAG 3 cut(s) 190, 621, 631
BseXI GCAGC 2 cut(s) 607, 669
BsgI GTGCAG 1 cut(s) 631
BshFI GGCC 8 cut(s) 390, 414, 447, 486, 622, 886, 914, 962
BsiHKAI GWGCWC 2 cut(s) 108, 929
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 4 cut(s) 501, 579, 592, 965
BslFI GGGAC 2 cut(s) 20, 939
BslI CCNNNNNNNGG 3 cut(s) 308, 691, 921
BsmAI GTCTC 1 cut(s) 521
BsmFI GGGAC 2 cut(s) 20, 939
BsnI GGCC 8 cut(s) 390, 414, 447, 486, 622, 886, 914, 962
BsoBI CYCGRG 1 cut(s) 399
Bsp1286I GDGCHC 3 cut(s) 108, 250, 929
Bsp143I GATC 6 cut(s) 163, 331, 370, 424, 547, 944
Bsp1720I GCTNAGC 1 cut(s) 861
Bsp19I CCATGG 2 cut(s) 385, 957
BspACI CCGC 6 cut(s) 504, 507, 679, 897, 900, 921
BspANI GGCC 8 cut(s) 390, 414, 447, 486, 622, 886, 914, 962
BspCNI CTCAG 2 cut(s) 853, 868
BspHI TCATGA 4 cut(s) 355, 439, 550, 1026
BspLI GGNNCC 4 cut(s) 165, 913, 963, 980
BspMAI CTGCAG 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 287
BspPI GGATC 2 cut(s) 158, 171
BsrBI CCGCTC 1 cut(s) 897
BsrFI RCCGGY 2 cut(s) 500, 591
BsrI ACTGG 1 cut(s) 487
BssAI RCCGGY 2 cut(s) 500, 591
BssECI CCNNGG 5 cut(s) 361, 385, 957, 963, 974
BssMI GATC 6 cut(s) 163, 331, 370, 424, 547, 944
BssT1I CCWWGG 2 cut(s) 385, 957
Bst2UI CCWGG 1 cut(s) 624
Bst4CI ACNGT 2 cut(s) 686, 1067
Bst6I CTCTTC 1 cut(s) 697
BstAPI GCANNNNNTGC 1 cut(s) 654
BstC8I GCNNGC 4 cut(s) 255, 380, 502, 858
BstDEI CTNAG 3 cut(s) 174, 861, 876
BstDSI CCRYGG 3 cut(s) 385, 957, 974
BstF5I GGATG 5 cut(s) 128, 257, 741, 830, 1037
BstHHI GCGC 1 cut(s) 994
BstKTI GATC 6 cut(s) 166, 334, 373, 427, 550, 947
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 6 cut(s) 163, 331, 370, 424, 547, 944
BstMWI GCNNNNNNNGC 5 cut(s) 20, 254, 654, 687, 862
BstNI CCWGG 1 cut(s) 624
BstNSI RCATGY 3 cut(s) 52, 382, 495
BstSCI CCNGG 2 cut(s) 622, 963
BstSFI CTRYAG 1 cut(s) 251
BstV1I GCAGC 2 cut(s) 607, 669
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 2 cut(s) 54, 849
BsuRI GGCC 8 cut(s) 390, 414, 447, 486, 622, 886, 914, 962
BtgI CCRYGG 3 cut(s) 385, 957, 974
BtsCI GGATG 5 cut(s) 128, 257, 741, 830, 1037
BveI ACCTGC 1 cut(s) 287
Cac8I GCNNGC 4 cut(s) 255, 380, 502, 858
CciI TCATGA 4 cut(s) 355, 439, 550, 1026
CfoI GCGC 1 cut(s) 994
Cfr10I RCCGGY 2 cut(s) 500, 591
Cfr13I GGNCC 6 cut(s) 299, 485, 884, 912, 961, 978
Csp6I GTAC 1 cut(s) 799
CviQI GTAC 1 cut(s) 799
DdeI CTNAG 3 cut(s) 174, 861, 876
DpnI GATC 6 cut(s) 165, 333, 372, 426, 549, 946
DpnII GATC 6 cut(s) 163, 331, 370, 424, 547, 944
EaeI YGGCCR 3 cut(s) 388, 412, 445
Eam1104I CTCTTC 1 cut(s) 697
EarI CTCTTC 1 cut(s) 697
EciI GGCGGA 2 cut(s) 522, 668
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 2 cut(s) 385, 957
Eco147I AGGCCT 1 cut(s) 622
Eco24I GRGCYC 2 cut(s) 108, 250
Eco47I GGWCC 2 cut(s) 299, 978
Eco53kI GAGCTC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 399
EcoICRI GAGCTC 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 912
EcoRI GAATTC 1 cut(s) 627
EcoRII CCWGG 1 cut(s) 622
EcoT14I CCWWGG 2 cut(s) 385, 957
EcoT22I ATGCAT 1 cut(s) 397
EcoT38I GRGCYC 2 cut(s) 108, 250
ErhI CCWWGG 2 cut(s) 385, 957
FalI AAGNNNNNCTT 2 cut(s) 559, 591
FaqI GGGAC 2 cut(s) 20, 939
FauI CCCGC 1 cut(s) 914
FauNDI CATATG 2 cut(s) 304, 468
FbaI TGATCA 4 cut(s) 331, 370, 424, 547
FblI GTMKAC 1 cut(s) 715
Fnu4HI GCNGC 5 cut(s) 505, 596, 658, 898, 901
FokI GGATG 5 cut(s) 115, 244, 748, 837, 1024
FriOI GRGCYC 2 cut(s) 108, 250
Fsp4HI GCNGC 5 cut(s) 505, 596, 658, 898, 901
FspBI CTAG 1 cut(s) 531
GlaI GCGC 1 cut(s) 993
GluI GCNGC 5 cut(s) 505, 596, 658, 898, 901
HaeIII GGCC 8 cut(s) 390, 414, 447, 486, 622, 886, 914, 962
HapII CCGG 4 cut(s) 501, 579, 592, 965
HhaI GCGC 1 cut(s) 994
Hin6I GCGC 1 cut(s) 992
HinP1I GCGC 1 cut(s) 992
HincII GTYRAC 2 cut(s) 79, 289
HindII GTYRAC 2 cut(s) 79, 289
HinfI GANTC 5 cut(s) 71, 120, 406, 786, 970
HpaII CCGG 4 cut(s) 501, 579, 592, 965
HphI GGTGA 6 cut(s) 329, 930, 979, 1047, 1055, 1061
Hpy166II GTNNAC 3 cut(s) 79, 289, 716
Hpy188I TCNGA 2 cut(s) 133, 365
Hpy188III TCNNGA 7 cut(s) 329, 356, 399, 440, 551, 948, 1027
Hpy8I GTNNAC 3 cut(s) 79, 289, 716
HpyAV CCTTC 2 cut(s) 746, 885
HpyCH4III ACNGT 2 cut(s) 686, 1067
HpyCH4V TGCA 7 cut(s) 101, 253, 296, 382, 395, 648, 657
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 254, 654, 687, 862
HpyF3I CTNAG 3 cut(s) 174, 861, 876
HspAI GCGC 1 cut(s) 992
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
Ksp22I TGATCA 4 cut(s) 331, 370, 424, 547
Kzo9I GATC 6 cut(s) 163, 331, 370, 424, 547, 944
LmnI GCTCC 4 cut(s) 37, 111, 894, 924
Lsp1109I GCAGC 2 cut(s) 607, 669
LweI GCATC 3 cut(s) 134, 266, 404
MaeI CTAG 1 cut(s) 531
MaeIII GTNAC 3 cut(s) 936, 967, 1067
MalI GATC 6 cut(s) 165, 333, 372, 426, 549, 946
MbiI CCGCTC 1 cut(s) 897
MboI GATC 6 cut(s) 163, 331, 370, 424, 547, 944
MboII GAAGA 2 cut(s) 56, 714
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 3 cut(s) 108, 250, 929
MlsI TGGCCA 3 cut(s) 390, 414, 447
MluCI AATT 2 cut(s) 627, 1015
MluNI TGGCCA 3 cut(s) 390, 414, 447
MlyI GAGTC 3 cut(s) 80, 415, 964
MmeI TCCRAC 5 cut(s) 133, 285, 503, 504, 802
Mox20I TGGCCA 3 cut(s) 390, 414, 447
Mph1103I ATGCAT 1 cut(s) 397
MroNI GCCGGC 1 cut(s) 500
MscI TGGCCA 3 cut(s) 390, 414, 447
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 6 cut(s) 282, 372, 390, 420, 438, 932
Msp20I TGGCCA 3 cut(s) 390, 414, 447
MspI CCGG 4 cut(s) 501, 579, 592, 965
MspR9I CCNGG 2 cut(s) 624, 965
MvaI CCWGG 1 cut(s) 624
MwoI GCNNNNNNNGC 5 cut(s) 20, 254, 654, 687, 862
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 965
NcoI CCATGG 2 cut(s) 385, 957
NdeI CATATG 2 cut(s) 304, 468
NdeII GATC 6 cut(s) 163, 331, 370, 424, 547, 944
NgoMIV GCCGGC 1 cut(s) 500
NlaIV GGNNCC 4 cut(s) 165, 913, 963, 980
NmuCI GTSAC 3 cut(s) 936, 967, 1067
NsiI ATGCAT 1 cut(s) 397
NspI RCATGY 3 cut(s) 52, 382, 495
PaeI GCATGC 1 cut(s) 382
PaeR7I CTCGAG 1 cut(s) 399
PagI TCATGA 4 cut(s) 355, 439, 550, 1026
PceI AGGCCT 1 cut(s) 622
PciI ACATGT 2 cut(s) 48, 491
PcsI WCGNNNNNNNCGW 1 cut(s) 129
PdiI GCCGGC 1 cut(s) 502
PfeI GAWTC 2 cut(s) 120, 786
PkrI GCNGC 5 cut(s) 506, 597, 659, 899, 902
PleI GAGTC 3 cut(s) 79, 414, 964
PpsI GAGTC 3 cut(s) 79, 414, 964
PscI ACATGT 2 cut(s) 48, 491
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 622
PspGI CCWGG 1 cut(s) 622
PspN4I GGNNCC 4 cut(s) 165, 913, 963, 980
PspPI GGNCC 6 cut(s) 299, 485, 884, 912, 961, 978
PstI CTGCAG 1 cut(s) 255
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 800
RsaNI GTAC 1 cut(s) 799
RseI CAYNNNNRTG 6 cut(s) 282, 372, 390, 420, 438, 932
SacI GAGCTC 1 cut(s) 108
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 5 cut(s) 505, 596, 658, 898, 901
Sau3AI GATC 6 cut(s) 163, 331, 370, 424, 547, 944
Sau96I GGNCC 6 cut(s) 299, 485, 884, 912, 961, 978
SbfI CCTGCAGG 1 cut(s) 255
SchI GAGTC 3 cut(s) 80, 415, 964
ScrFI CCNGG 2 cut(s) 624, 965
SdaI CCTGCAGG 1 cut(s) 255
SduI GDGCHC 3 cut(s) 108, 250, 929
SfaNI GCATC 3 cut(s) 134, 266, 404
SfcI CTRYAG 1 cut(s) 251
Sfr274I CTCGAG 1 cut(s) 399
SinI GGWCC 2 cut(s) 299, 978
SlaI CTCGAG 1 cut(s) 399
SmiMI CAYNNNNRTG 6 cut(s) 282, 372, 390, 420, 438, 932
SmlI CTYRAG 1 cut(s) 399
SmoI CTYRAG 1 cut(s) 399
SphI GCATGC 1 cut(s) 382
Sse8387I CCTGCAGG 1 cut(s) 255
Sse9I AATT 2 cut(s) 627, 1015
SseBI AGGCCT 1 cut(s) 622
SsiI CCGC 6 cut(s) 504, 507, 679, 897, 900, 921
SspI AATATT 1 cut(s) 156
SspMI CTAG 1 cut(s) 531
SstI GAGCTC 1 cut(s) 108
StuI AGGCCT 1 cut(s) 622
StyD4I CCNGG 2 cut(s) 622, 963
StyI CCWWGG 2 cut(s) 385, 957
TaaI ACNGT 2 cut(s) 686, 1067
TaqI TCGA 2 cut(s) 400, 638
TasI AATT 2 cut(s) 627, 1015
TauI GCSGC 3 cut(s) 507, 900, 903
TfiI GAWTC 2 cut(s) 120, 786
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TseFI GTSAC 3 cut(s) 936, 967, 1067
TseI GCWGC 2 cut(s) 595, 657
Tsp45I GTSAC 3 cut(s) 936, 967, 1067
TspDTI ATGAA 4 cut(s) 359, 485, 1026, 1043
TspGWI ACGGA 2 cut(s) 628, 991
VpaK11BI GGWCC 2 cut(s) 299, 978
XapI RAATTY 2 cut(s) 627, 1015
XceI RCATGY 3 cut(s) 52, 382, 495
XhoI CTCGAG 1 cut(s) 399
XmiI GTMKAC 1 cut(s) 715
XspI CTAG 1 cut(s) 531
Zsp2I ATGCAT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.