Rw5G044500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0015586
Physical Location & Seq
Reverse (-)
78169256 .. 78170211
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G044500.1

Sequence Viewer

Length: 354 bp
ATGGTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCGTCCAGTGTCTAGGGAGGCGATTTAGCCAAAGGTACATACAAAGAGCAGGAAAGGTTGGATGTTGTTCAAGGTTCCCTAGCGCGGTGAAGCAAGCAGAGCTCAAGTGGGCCGAGAAAGGGCCCAGAAGGTATGGTGGAAATGGGCCTTACGGTCACAGCACCATGGGAACACCCAGATCAAAAAGCCCAGTAACTCCAAGAACTCCACGGACCCCAATCAGGGCCCATGTTCCTCCTAGTCCTGGCCCAAATTCCTTTGTCACCAGTTCATCATACTCTCCTTATTCTCCCAGTCACCACCACCTTCCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.87

Weight (kDa)

10.57

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 122
AciI CCGC 1 cut(s) 122
AcsI RAATTY 1 cut(s) 289
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 5 cut(s) 121, 156, 258, 259, 281
AgsI TTSAA 1 cut(s) 108
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 1 cut(s) 139
AluI AGCT 1 cut(s) 139
Alw21I GWGCWC 1 cut(s) 141
AoxI GGCC 5 cut(s) 147, 158, 182, 261, 283
ApaI GGGCCC 2 cut(s) 162, 265
ApoI RAATTY 1 cut(s) 289
AspLEI GCGC 1 cut(s) 122
AspS9I GGNCC 8 cut(s) 147, 158, 159, 182, 249, 261, 262, 284
AsuHPI GGTGA 3 cut(s) 136, 292, 326
AvaII GGWCC 1 cut(s) 249
BaeGI GKGCMC 2 cut(s) 162, 265
BanII GRGCYC 3 cut(s) 141, 162, 265
Bbv12I GWGCWC 1 cut(s) 141
BccI CCATC 1 cut(s) 4
BciT130I CCWGG 1 cut(s) 282
BfaI CTAG 4 cut(s) 50, 117, 276, 352
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 1 cut(s) 249
BmgT120I GGNCC 8 cut(s) 147, 158, 159, 182, 249, 261, 262, 284
BmiI GGNNCC 4 cut(s) 113, 160, 251, 263
BmrFI CCNGG 1 cut(s) 282
BmrI ACTGGG 2 cut(s) 221, 324
BmuI ACTGGG 2 cut(s) 221, 324
BpuEI CTTGAG 1 cut(s) 125
BsaJI CCNNGG 2 cut(s) 201, 245
Bsc4I CCNNNNNNNGG 5 cut(s) 121, 156, 258, 259, 281
Bse1I ACTGG 4 cut(s) 43, 227, 303, 330
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 201, 245
BseGI GGATG 2 cut(s) 15, 104
BseLI CCNNNNNNNGG 5 cut(s) 121, 156, 258, 259, 281
BseNI ACTGG 4 cut(s) 43, 227, 303, 330
BseSI GKGCMC 2 cut(s) 162, 265
Bsh1236I CGCG 1 cut(s) 122
BshFI GGCC 5 cut(s) 149, 160, 184, 263, 285
BsiHKAI GWGCWC 1 cut(s) 141
BslI CCNNNNNNNGG 5 cut(s) 121, 156, 258, 259, 281
BsnI GGCC 5 cut(s) 149, 160, 184, 263, 285
Bsp120I GGGCCC 2 cut(s) 158, 261
Bsp1286I GDGCHC 3 cut(s) 141, 162, 265
Bsp143I GATC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 201
BspACI CCGC 1 cut(s) 122
BspANI GGCC 5 cut(s) 149, 160, 184, 263, 285
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 4 cut(s) 113, 160, 251, 263
BsrI ACTGG 4 cut(s) 43, 227, 303, 330
BssECI CCNNGG 2 cut(s) 201, 245
BssMI GATC 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 132
BstDSI CCRYGG 2 cut(s) 201, 245
BstF5I GGATG 2 cut(s) 15, 104
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 122
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSLI GKGCMC 2 cut(s) 162, 265
BstUI CGCG 1 cut(s) 122
BsuRI GGCC 5 cut(s) 149, 160, 184, 263, 285
BtgI CCRYGG 2 cut(s) 201, 245
BtsCI GGATG 2 cut(s) 15, 104
BtsIMutI CAGTG 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 132
CfoI GCGC 1 cut(s) 122
Cfr13I GGNCC 8 cut(s) 147, 158, 159, 182, 249, 261, 262, 284
CseI GACGC 1 cut(s) 28
Csp6I GTAC 1 cut(s) 73
CviAII CATG 2 cut(s) 202, 266
CviJI RGCY 8 cut(s) 66, 139, 149, 160, 184, 225, 263, 285
CviKI_1 RGCY 8 cut(s) 66, 139, 149, 160, 184, 225, 263, 285
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
Ecl136II GAGCTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 201
Eco24I GRGCYC 3 cut(s) 141, 162, 265
Eco47I GGWCC 1 cut(s) 249
Eco53kI GAGCTC 1 cut(s) 139
EcoICRI GAGCTC 1 cut(s) 139
EcoO109I RGGNCCY 2 cut(s) 158, 261
EcoRII CCWGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 201
EcoT38I GRGCYC 3 cut(s) 141, 162, 265
ErhI CCWWGG 1 cut(s) 201
FaeI CATG 2 cut(s) 205, 269
FaiI YATR 5 cut(s) 77, 171, 203, 267, 313
FatI CATG 2 cut(s) 201, 265
FokI GGATG 2 cut(s) 22, 111
FriOI GRGCYC 3 cut(s) 141, 162, 265
FspBI CTAG 4 cut(s) 50, 117, 276, 352
GlaI GCGC 1 cut(s) 121
HaeIII GGCC 5 cut(s) 149, 160, 184, 263, 285
HgaI GACGC 1 cut(s) 28
HhaI GCGC 1 cut(s) 122
Hin1II CATG 2 cut(s) 205, 269
Hin6I GCGC 1 cut(s) 120
HinP1I GCGC 1 cut(s) 120
HphI GGTGA 3 cut(s) 136, 292, 326
HpyAV CCTTC 3 cut(s) 20, 159, 353
HpyCH4III ACNGT 1 cut(s) 191
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92II CATG 2 cut(s) 205, 269
HspAI GCGC 1 cut(s) 120
Kzo9I GATC 1 cut(s) 215
MaeI CTAG 4 cut(s) 50, 117, 276, 352
MaeIII GTNAC 4 cut(s) 191, 229, 298, 332
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MhlI GDGCHC 3 cut(s) 141, 162, 265
MluCI AATT 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 2 cut(s) 48, 282
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 1 cut(s) 136
NcoI CCATGG 1 cut(s) 201
NdeII GATC 1 cut(s) 215
NlaIII CATG 2 cut(s) 205, 269
NlaIV GGNNCC 4 cut(s) 113, 160, 251, 263
NmeAIII GCCGAG 1 cut(s) 175
NmuCI GTSAC 3 cut(s) 191, 298, 332
Psp124BI GAGCTC 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 280
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 113, 160, 251, 263
PspOMI GGGCCC 2 cut(s) 158, 261
PspPI GGNCC 8 cut(s) 147, 158, 159, 182, 249, 261, 262, 284
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 141
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 8 cut(s) 147, 158, 159, 182, 249, 261, 262, 284
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 3 cut(s) 141, 162, 265
SetI ASST 7 cut(s) 31, 74, 96, 113, 141, 170, 345
SinI GGWCC 1 cut(s) 249
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 289
SsiI CCGC 1 cut(s) 122
SspMI CTAG 4 cut(s) 50, 117, 276, 352
SstI GAGCTC 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 201
TaaI ACNGT 1 cut(s) 191
TasI AATT 1 cut(s) 289
TscAI CASTG 1 cut(s) 50
TseFI GTSAC 3 cut(s) 191, 298, 332
Tsp45I GTSAC 3 cut(s) 191, 298, 332
TspDTI ATGAA 1 cut(s) 297
TspGWI ACGGA 1 cut(s) 262
TspRI CASTG 1 cut(s) 50
VpaK11BI GGWCC 1 cut(s) 249
XapI RAATTY 1 cut(s) 289
XspI CTAG 4 cut(s) 50, 117, 276, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.