Rorug05G0421900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0015586
Physical Location & Seq
Forward (+)
58653070 .. 58656614
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0421900.1

Sequence Viewer

Length: 759 bp
ATGGCCCTCGTCGGCGTGCTTGCTTTACAGGGCTCTTACAACGAACACATAGCAGTGCTGAGAAGGCTGGGAGTGAAGGGCGTGGAGATAAAGAAACCAGAGCAGCTCGAAACCGTGGCCTCACTCATAATCCCTGGAGGAGAGAGCACCACCATGGCTAAGCTCGCCGAGTTCCACAACCTGTTTCCTGCTTTGCGTGAGTTTGTTAAGATGGGGAAGCCTGTTTGGGGAACCTGTGCTGGACTTATATTCTTAGCAAACAGAGCTACAGGACAGAAAATAGGAGGACAGGAACTTGTTGGAGGCCTAGATTGCATGGTTCACAGAAATTTCTTTGGCAGTCAGCTTCAGAGTTTTGAGACAGAACTTTCAGTACCAGAGCTTGCTTCGAAGGAAGGTGGTCCTGAAGTATTTCGTGGAGTTTTCATCCGCGCTCCTGCAATCCTTGAGGTAGGACCACAAGTTGAAGTCCTGGCTGATTATCCTGTCCCAGCTAATAAGTGGAAGGATTCAAATCCTGGTGTTGAAGGCCATGAGGAAAATTCTGGGTCTGAGAAGAAAGTGATTGTAGCAGTTAGACAAGGGAATTTGCTAGCAACTGCCTTCCACCCTGAACTGACAGCAGATACTCGATGGCATAGTTACTTCTTGAAGATGGCAACTGAAACCGAAGAAGGAGCCTCAAGTAGCATTGTTGCTGTTGGTGCAGATCTAGATTTAAACCAACCAACAAAGATTGACCTCCCAGTATTTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.2

Weight (kDa)

5.45

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SNO PF01174 6 - 220 3.8e-50 SNO glutamine amidotransferase family
GATase_3 PF07685 16 - 105 5e-08 CobB/CobQ-like glutamine amidotransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 432
AciI CCGC 1 cut(s) 430
AcsI RAATTY 3 cut(s) 328, 541, 586
AcuI CTGAAG 2 cut(s) 332, 426
AfaI GTAC 1 cut(s) 375
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 4 cut(s) 467, 513, 527, 652
AjnI CCWGG 3 cut(s) 133, 471, 517
AluBI AGCT 6 cut(s) 106, 163, 266, 346, 382, 494
AluI AGCT 6 cut(s) 106, 163, 266, 346, 382, 494
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 353
AoxI GGCC 4 cut(s) 3, 117, 304, 529
ApeKI GCWGC 1 cut(s) 103
ApoI RAATTY 3 cut(s) 328, 541, 586
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 3 cut(s) 4, 401, 455
AsuII TTCGAA 1 cut(s) 389
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 2 cut(s) 401, 455
BanII GRGCYC 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 115
BccI CCATC 3 cut(s) 205, 627, 649
BciT130I CCWGG 3 cut(s) 135, 473, 519
BcoDI GTCTC 1 cut(s) 353
BfaI CTAG 3 cut(s) 308, 593, 713
BfmI CTRYAG 1 cut(s) 267
BglII AGATCT 1 cut(s) 709
BisI GCNGC 1 cut(s) 104
BlpI GCTNAGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 105
Bme1390I CCNGG 3 cut(s) 135, 473, 519
Bme18I GGWCC 2 cut(s) 401, 455
BmgT120I GGNCC 3 cut(s) 4, 401, 455
BmiI GGNNCC 2 cut(s) 232, 679
BmrFI CCNGG 3 cut(s) 135, 473, 519
BmrI ACTGGG 1 cut(s) 740
BmtI GCTAGC 1 cut(s) 596
BmuI ACTGGG 1 cut(s) 740
BpmI CTGGAG 1 cut(s) 156
Bpu1102I GCTNAGC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 389
BpuEI CTTGAG 2 cut(s) 467, 667
BsaBI GATNNNNATC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 114, 133, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 746
Bse8I GATNNNNATC 1 cut(s) 513
BseBI CCWGG 3 cut(s) 135, 473, 519
BseDI CCNNGG 3 cut(s) 114, 133, 153
BseGI GGATG 1 cut(s) 426
BseJI GATNNNNATC 1 cut(s) 513
BseLI CCNNNNNNNGG 1 cut(s) 227
BseMII CTCAG 2 cut(s) 50, 543
BseNI ACTGG 1 cut(s) 746
BseRI GAGGAG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 115
BseYI CCCAGC 2 cut(s) 67, 490
BsgI GTGCAG 1 cut(s) 726
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 4 cut(s) 5, 119, 306, 531
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 473
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 473
BsnI GGCC 4 cut(s) 5, 119, 306, 531
Bsp119I TTCGAA 1 cut(s) 389
Bsp1286I GDGCHC 2 cut(s) 35, 149
Bsp143I GATC 1 cut(s) 709
Bsp1720I GCTNAGC 1 cut(s) 159
Bsp19I CCATGG 1 cut(s) 153
BspACI CCGC 1 cut(s) 430
BspANI GGCC 4 cut(s) 5, 119, 306, 531
BspCNI CTCAG 2 cut(s) 51, 544
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 232, 679
BspOI GCTAGC 1 cut(s) 596
BspT104I TTCGAA 1 cut(s) 389
BsrI ACTGG 1 cut(s) 746
BssECI CCNNGG 3 cut(s) 114, 133, 153
BssMI GATC 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 3 cut(s) 135, 473, 519
Bst4CI ACNGT 1 cut(s) 115
BstBI TTCGAA 1 cut(s) 389
BstC8I GCNNGC 5 cut(s) 17, 21, 165, 384, 594
BstDEI CTNAG 4 cut(s) 59, 159, 253, 552
BstDSI CCRYGG 2 cut(s) 114, 153
BstF5I GGATG 1 cut(s) 426
BstFNI CGCG 1 cut(s) 432
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 1 cut(s) 712
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 1 cut(s) 709
BstMWI GCNNNNNNNGC 5 cut(s) 64, 164, 263, 312, 704
BstNI CCWGG 3 cut(s) 135, 473, 519
BstSCI CCNGG 3 cut(s) 133, 471, 517
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 115
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BsuRI GGCC 4 cut(s) 5, 119, 306, 531
BtgI CCRYGG 2 cut(s) 114, 153
BtsCI GGATG 1 cut(s) 426
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 5 cut(s) 17, 21, 165, 384, 594
CfoI GCGC 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 4, 401, 455
Csp6I GTAC 1 cut(s) 374
CviAII CATG 3 cut(s) 154, 316, 533
CviQI GTAC 1 cut(s) 374
DdeI CTNAG 4 cut(s) 59, 159, 253, 552
DpnI GATC 1 cut(s) 711
DpnII GATC 1 cut(s) 709
DraI TTTAAA 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 153
Eco147I AGGCCT 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 35
Eco47I GGWCC 2 cut(s) 401, 455
Eco57I CTGAAG 2 cut(s) 332, 426
EcoRII CCWGG 3 cut(s) 133, 471, 517
EcoT14I CCWWGG 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 3 cut(s) 157, 319, 536
FaiI YATR 8 cut(s) 50, 128, 155, 248, 317, 534, 639, 757
FaqI GGGAC 1 cut(s) 473
FatI CATG 3 cut(s) 153, 315, 532
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 3 cut(s) 308, 593, 713
GlaI GCGC 1 cut(s) 433
GluI GCNGC 1 cut(s) 104
GsaI CCCAGC 2 cut(s) 71, 494
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 4 cut(s) 5, 119, 306, 531
HhaI GCGC 1 cut(s) 434
Hin1II CATG 3 cut(s) 157, 319, 536
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HinfI GANTC 1 cut(s) 509
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 2 cut(s) 351, 553
Hpy188III TCNNGA 3 cut(s) 404, 649, 713
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 8 cut(s) 57, 70, 385, 389, 499, 521, 613, 668
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 315, 440, 707
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 164, 263, 312, 704
HpyF3I CTNAG 4 cut(s) 59, 159, 253, 552
Hsp92II CATG 3 cut(s) 157, 319, 536
HspAI GCGC 1 cut(s) 432
Kzo9I GATC 1 cut(s) 709
LmnI GCTCC 2 cut(s) 439, 677
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 3 cut(s) 308, 593, 713
MaeIII GTNAC 1 cut(s) 641
MalI GATC 1 cut(s) 711
MboI GATC 1 cut(s) 709
MboII GAAGA 3 cut(s) 568, 664, 683
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 35, 149
MluCI AATT 3 cut(s) 328, 541, 586
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 9 cut(s) 17, 130, 131, 278, 296, 442, 529, 691, 752
MroXI GAANNNNTTC 1 cut(s) 411
MseI TTAA 2 cut(s) 207, 719
MslI CAYNNNNRTG 2 cut(s) 53, 152
MspR9I CCNGG 3 cut(s) 135, 473, 519
MvaI CCWGG 3 cut(s) 135, 473, 519
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 5 cut(s) 64, 164, 263, 312, 704
NcoI CCATGG 1 cut(s) 153
NdeII GATC 1 cut(s) 709
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 3 cut(s) 157, 319, 536
NlaIV GGNNCC 2 cut(s) 232, 679
NmeAIII GCCGAG 1 cut(s) 193
NspV TTCGAA 1 cut(s) 389
PceI AGGCCT 1 cut(s) 306
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 1 cut(s) 509
PkrI GCNGC 1 cut(s) 105
Psp6I CCWGG 3 cut(s) 133, 471, 517
PspFI CCCAGC 2 cut(s) 67, 490
PspGI CCWGG 3 cut(s) 133, 471, 517
PspN4I GGNNCC 2 cut(s) 232, 679
PspPI GGNCC 3 cut(s) 4, 401, 455
PsrI GAACNNNNNNTAC 2 cut(s) 357, 389
PsuI RGATCY 1 cut(s) 709
RsaI GTAC 1 cut(s) 375
RsaNI GTAC 1 cut(s) 374
RseI CAYNNNNRTG 2 cut(s) 53, 152
SaqAI TTAA 2 cut(s) 207, 719
SatI GCNGC 1 cut(s) 104
Sau3AI GATC 1 cut(s) 709
Sau96I GGNCC 3 cut(s) 4, 401, 455
ScrFI CCNGG 3 cut(s) 135, 473, 519
SduI GDGCHC 2 cut(s) 35, 149
SfcI CTRYAG 1 cut(s) 267
SfuI TTCGAA 1 cut(s) 389
SinI GGWCC 2 cut(s) 401, 455
SmiMI CAYNNNNRTG 2 cut(s) 53, 152
SmlI CTYRAG 2 cut(s) 446, 682
SmoI CTYRAG 2 cut(s) 446, 682
Sse9I AATT 3 cut(s) 328, 541, 586
SseBI AGGCCT 1 cut(s) 306
SsiI CCGC 1 cut(s) 430
SspMI CTAG 3 cut(s) 308, 593, 713
StuI AGGCCT 1 cut(s) 306
StyD4I CCNGG 3 cut(s) 133, 471, 517
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 3 cut(s) 108, 389, 631
TasI AATT 3 cut(s) 328, 541, 586
TfiI GAWTC 1 cut(s) 509
Tru1I TTAA 2 cut(s) 207, 719
Tru9I TTAA 2 cut(s) 207, 719
TscAI CASTG 1 cut(s) 60
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 415
TspRI CASTG 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 401, 455
XapI RAATTY 3 cut(s) 328, 541, 586
XbaI TCTAGA 1 cut(s) 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 498
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 3 cut(s) 308, 593, 713
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.