MD11G1053800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015586
Physical Location & Seq
Forward (+)
4587727 .. 4590041
2315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1053800.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGGGGACAAGGCAACATTAAGCAAGGCAAGAATGGAGCTTGAAGACATGTACCAAGGCATCCCAGATGAGTCAGTTAACCTAACTTTCCAGGACTTTGCAGAGCTCAAACTACACCAAGTTACATCAGAAAAGAAAAAAAAACCTACTCCATTATTATTGAATCCAATTTCTCAACTCAAATCCACCGCACAAGCATCCTCCCCCTCTCCTTTGACCAAACTCCCCAGCCTTGACTTCAACCGTGCCTTGCAAGCATCCAGAGATAACCACCACAACAACGAAAACAATGTCCCTGTCGGTCCATATGACATTGGTAGTAACAATGATTATAATCATCAGCATATTGATCATCATATGAATAGTCATCATGGTCATCAACGTGAAGTCAACCATGACATGCAGCATGGTCATGGAGGTCACGGTCAATATATGGGTGGTGGCGACCATCATCATAACCATCAGATGCATCATGGGATGCAACATGGTCATGATGGCCATGCAGTTAATAATGGTCATCATATGAGTCTGAATAGTCCTGGTCCCACGTGTAATTCAGGTATGAAGCATGGATTGGAGACTAGCTTGGGGGCTTTTGATCATGATGTGAGTGGTGTGAGCGGTGTGAGCATGGCTTCCATGTACCAGAAAGAGAGAGGAGGAATAAGAAGGCCTGGGATTCCCCACTCTAATATCTGCACCCTTTGCAGTACCTACATCTATATTTTCCGCCACCGTTGCCTGGTATGTGGAAGAGTGTATTGTAGACAATGCGTGATTGTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCATCGAGTGTTTAGGGAGGAGATTCAGCCAAAGGTACATACAAAGAGCAGGGAAGTTTAGGTGTTGGTCAAGGTACCCTTCCAGGGTGAAGCAAGCAGAGCTCAAGTGGGCTGAGAAAGGGCCGAGAAGAAGTACCGGCAACGGAGGCTATGGCCGGAGCTCGATGACATCGCCAATATCAAAAAGCCCAGTGACGCCGATGACTCCGAGGACCCCAAACAGAGGCCATGCTAGTGGCCCAAATTCTTTTGTCATGAATAGTTCATCATATTCCCCATATTCACCAAGTCATCGCCACCACCTTCCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

41.84

Weight (kDa)

9.39

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
Acc65I GGTACC 1 cut(s) 888
AccB1I GGYRCC 1 cut(s) 888
AccBSI CCGCTC 1 cut(s) 621
AccI GTMKAC 1 cut(s) 766
AciI CCGC 3 cut(s) 189, 621, 730
AcoI YGGCCR 2 cut(s) 496, 967
AcsI RAATTY 1 cut(s) 1057
AcvI CACGTG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 1010
AfaI GTAC 6 cut(s) 53, 644, 712, 851, 890, 949
AfiI CCNNNNNNNGG 3 cut(s) 742, 898, 1037
AflIII ACRYGT 2 cut(s) 48, 548
AgsI TTSAA 3 cut(s) 44, 163, 241
AjnI CCWGG 5 cut(s) 90, 538, 673, 741, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 557, 589
AluBI AGCT 5 cut(s) 40, 106, 585, 916, 975
AluI AGCT 5 cut(s) 40, 106, 585, 916, 975
Alw21I GWGCWC 3 cut(s) 108, 918, 977
Alw26I GTCTC 1 cut(s) 572
AoxI GGCC 6 cut(s) 496, 671, 935, 967, 1039, 1051
ApeKI GCWGC 1 cut(s) 403
ApoI RAATTY 1 cut(s) 1057
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
Asp718I GGTACC 1 cut(s) 888
AspS9I GGNCC 5 cut(s) 302, 542, 935, 1026, 1052
AsuHPI GGTGA 2 cut(s) 913, 1089
AvaII GGWCC 3 cut(s) 302, 542, 1026
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 888
BanII GRGCYC 3 cut(s) 108, 918, 977
BbrPI CACGTG 1 cut(s) 549
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 3 cut(s) 108, 918, 977
BbvI GCAGC 1 cut(s) 415
BccI CCATC 4 cut(s) 456, 468, 488, 781
BciT130I CCWGG 5 cut(s) 92, 540, 675, 743, 898
BclI TGATCA 2 cut(s) 349, 598
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 3 cut(s) 582, 1047, 1126
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 5 cut(s) 92, 540, 675, 743, 898
Bme18I GGWCC 3 cut(s) 302, 542, 1026
BmgT120I GGNCC 5 cut(s) 302, 542, 935, 1026, 1052
BmiI GGNNCC 3 cut(s) 544, 890, 1028
BmrFI CCNGG 5 cut(s) 92, 540, 675, 743, 898
BmrI ACTGGG 1 cut(s) 998
BmsI GCATC 7 cut(s) 69, 206, 266, 456, 468, 478, 825
BmuI ACTGGG 1 cut(s) 998
BpiI GAAGAC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 902
BsaAI YACGTR 1 cut(s) 549
BsaBI GATNNNNATC 1 cut(s) 333
BsaHI GRCGYC 1 cut(s) 1010
BsaJI CCNNGG 4 cut(s) 55, 674, 897, 1022
Bsc4I CCNNNNNNNGG 3 cut(s) 742, 898, 1037
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 1 cut(s) 1004
Bse8I GATNNNNATC 1 cut(s) 333
BseBI CCWGG 5 cut(s) 92, 540, 675, 743, 898
BseDI CCNNGG 4 cut(s) 55, 674, 897, 1022
BseGI GGATG 5 cut(s) 60, 197, 257, 483, 792
BseJI GATNNNNATC 1 cut(s) 333
BseLI CCNNNNNNNGG 3 cut(s) 742, 898, 1037
BseMII CTCAG 1 cut(s) 918
BseNI ACTGG 1 cut(s) 1004
BseRI GAGGAG 2 cut(s) 672, 847
BseXI GCAGC 1 cut(s) 415
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 1 cut(s) 682
BshFI GGCC 6 cut(s) 498, 673, 937, 969, 1041, 1053
BshNI GGYRCC 1 cut(s) 888
BsiHKAI GWGCWC 3 cut(s) 108, 918, 977
BsiSI CCGG 2 cut(s) 951, 970
BslFI GGGAC 3 cut(s) 20, 278, 528
BslI CCNNNNNNNGG 3 cut(s) 742, 898, 1037
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 3 cut(s) 20, 278, 528
BsnI GGCC 6 cut(s) 498, 673, 937, 969, 1041, 1053
Bsp1286I GDGCHC 3 cut(s) 108, 918, 977
Bsp143I GATC 2 cut(s) 349, 598
BspACI CCGC 3 cut(s) 189, 621, 730
BspANI GGCC 6 cut(s) 498, 673, 937, 969, 1041, 1053
BspCNI CTCAG 1 cut(s) 919
BspHI TCATGA 3 cut(s) 490, 601, 1068
BspLI GGNNCC 3 cut(s) 544, 890, 1028
BspT107I GGYRCC 1 cut(s) 888
BsrBI CCGCTC 1 cut(s) 621
BsrFI RCCGGY 1 cut(s) 950
BsrI ACTGG 1 cut(s) 1004
BssAI RCCGGY 1 cut(s) 950
BssECI CCNNGG 4 cut(s) 55, 674, 897, 1022
BssMI GATC 2 cut(s) 349, 598
BssNI GRCGYC 1 cut(s) 1010
BssT1I CCWWGG 1 cut(s) 55
Bst2UI CCWGG 5 cut(s) 92, 540, 675, 743, 898
Bst4CI ACNGT 3 cut(s) 245, 425, 737
Bst6I CTCTTC 1 cut(s) 748
BstACI GRCGYC 1 cut(s) 1010
BstAPI GCANNNNNTGC 1 cut(s) 705
BstBAI YACGTR 1 cut(s) 549
BstC8I GCNNGC 2 cut(s) 255, 909
BstDEI CTNAG 1 cut(s) 927
BstF5I GGATG 5 cut(s) 60, 197, 257, 483, 792
BstKTI GATC 2 cut(s) 352, 601
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 2 cut(s) 349, 598
BstMWI GCNNNNNNNGC 6 cut(s) 254, 627, 705, 738, 913, 960
BstNI CCWGG 5 cut(s) 92, 540, 675, 743, 898
BstNSI RCATGY 2 cut(s) 52, 403
BstSCI CCNGG 5 cut(s) 90, 538, 673, 741, 896
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 1049
BsuRI GGCC 6 cut(s) 498, 673, 937, 969, 1041, 1053
BtgZI GCGATG 2 cut(s) 969, 1091
BtsCI GGATG 5 cut(s) 60, 197, 257, 483, 792
BtsIMutI CAGTG 1 cut(s) 1011
Cac8I GCNNGC 2 cut(s) 255, 909
CciI TCATGA 3 cut(s) 490, 601, 1068
Cfr10I RCCGGY 1 cut(s) 950
Cfr13I GGNCC 5 cut(s) 302, 542, 935, 1026, 1052
CseI GACGC 1 cut(s) 1018
Csp6I GTAC 6 cut(s) 52, 643, 711, 850, 889, 948
CviQI GTAC 6 cut(s) 52, 643, 711, 850, 889, 948
DdeI CTNAG 1 cut(s) 927
DpnI GATC 2 cut(s) 351, 600
DpnII GATC 2 cut(s) 349, 598
EaeI YGGCCR 2 cut(s) 496, 967
Eam1104I CTCTTC 1 cut(s) 748
EarI CTCTTC 1 cut(s) 748
EciI GGCGGA 1 cut(s) 719
Ecl136II GAGCTC 3 cut(s) 106, 916, 975
Eco130I CCWWGG 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 673
Eco24I GRGCYC 3 cut(s) 108, 918, 977
Eco47I GGWCC 3 cut(s) 302, 542, 1026
Eco53kI GAGCTC 3 cut(s) 106, 916, 975
Eco72I CACGTG 1 cut(s) 549
EcoICRI GAGCTC 3 cut(s) 106, 916, 975
EcoO109I RGGNCCY 1 cut(s) 1026
EcoRII CCWGG 5 cut(s) 90, 538, 673, 741, 896
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 2 cut(s) 471, 818
EcoT38I GRGCYC 3 cut(s) 108, 918, 977
ErhI CCWWGG 1 cut(s) 55
FalI AAGNNNNNCTT 2 cut(s) 877, 909
FaqI GGGAC 3 cut(s) 20, 278, 528
FauNDI CATATG 3 cut(s) 307, 357, 522
FbaI TGATCA 2 cut(s) 349, 598
FblI GTMKAC 1 cut(s) 766
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 5 cut(s) 47, 184, 244, 490, 799
FriOI GRGCYC 3 cut(s) 108, 918, 977
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 3 cut(s) 582, 1047, 1126
GluI GCNGC 1 cut(s) 404
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 6 cut(s) 498, 673, 937, 969, 1041, 1053
HapII CCGG 2 cut(s) 951, 970
HgaI GACGC 1 cut(s) 1018
Hin1I GRCGYC 1 cut(s) 1010
HincII GTYRAC 2 cut(s) 79, 391
HindII GTYRAC 2 cut(s) 79, 391
HinfI GANTC 6 cut(s) 71, 163, 526, 679, 837, 1018
HpaI GTTAAC 1 cut(s) 79
HpaII CCGG 2 cut(s) 951, 970
HphI GGTGA 2 cut(s) 913, 1089
Hpy166II GTNNAC 3 cut(s) 79, 391, 767
Hpy188I TCNGA 4 cut(s) 130, 465, 531, 1023
Hpy188III TCNNGA 4 cut(s) 261, 491, 602, 1069
Hpy8I GTNNAC 3 cut(s) 79, 391, 767
HpyAV CCTTC 4 cut(s) 663, 797, 903, 1127
HpyCH4III ACNGT 3 cut(s) 245, 425, 737
HpyCH4IV ACGT 2 cut(s) 382, 548
HpyCH4V TGCA 9 cut(s) 101, 253, 403, 469, 481, 503, 699, 708, 816
HpyF10VI GCNNNNNNNGC 6 cut(s) 254, 627, 705, 738, 913, 960
HpyF3I CTNAG 1 cut(s) 927
HpySE526I ACGT 2 cut(s) 382, 548
Hsp92I GRCGYC 1 cut(s) 1010
KpnI GGTACC 1 cut(s) 892
Ksp22I TGATCA 2 cut(s) 349, 598
KspAI GTTAAC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 349, 598
LmnI GCTCC 2 cut(s) 37, 972
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 7 cut(s) 69, 206, 266, 456, 468, 478, 825
MaeI CTAG 3 cut(s) 582, 1047, 1126
MaeII ACGT 2 cut(s) 382, 548
MaeIII GTNAC 4 cut(s) 121, 320, 419, 1006
MalI GATC 2 cut(s) 351, 600
MbiI CCGCTC 1 cut(s) 621
MboI GATC 2 cut(s) 349, 598
MboII GAAGA 3 cut(s) 56, 765, 954
MhlI GDGCHC 3 cut(s) 108, 918, 977
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 3 cut(s) 168, 553, 1057
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 3 cut(s) 80, 535, 1012
MnlI CCTC 9 cut(s) 211, 217, 410, 650, 653, 825, 953, 1017, 1031
Mox20I TGGCCA 1 cut(s) 498
Mph1103I ATGCAT 2 cut(s) 471, 818
MscI TGGCCA 1 cut(s) 498
MseI TTAA 3 cut(s) 20, 78, 507
MslI CAYNNNNRTG 4 cut(s) 381, 411, 489, 1047
Msp20I TGGCCA 1 cut(s) 498
MspI CCGG 2 cut(s) 951, 970
MspR9I CCNGG 5 cut(s) 92, 540, 675, 743, 898
MvaI CCWGG 5 cut(s) 92, 540, 675, 743, 898
MwoI GCNNNNNNNGC 6 cut(s) 254, 627, 705, 738, 913, 960
NdeI CATATG 3 cut(s) 307, 357, 522
NdeII GATC 2 cut(s) 349, 598
NlaIV GGNNCC 3 cut(s) 544, 890, 1028
NmeAIII GCCGAG 1 cut(s) 963
NmuCI GTSAC 2 cut(s) 419, 1006
NsiI ATGCAT 2 cut(s) 471, 818
NspI RCATGY 2 cut(s) 52, 403
PagI TCATGA 3 cut(s) 490, 601, 1068
PceI AGGCCT 1 cut(s) 673
PciI ACATGT 1 cut(s) 48
PfeI GAWTC 3 cut(s) 163, 679, 837
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 3 cut(s) 79, 534, 1012
PmaCI CACGTG 1 cut(s) 549
PmlI CACGTG 1 cut(s) 549
PpsI GAGTC 3 cut(s) 79, 534, 1012
Ppu21I YACGTR 1 cut(s) 549
PpuMI RGGWCCY 1 cut(s) 1026
PscI ACATGT 1 cut(s) 48
PsiI TTATAA 1 cut(s) 333
Psp124BI GAGCTC 3 cut(s) 108, 918, 977
Psp5II RGGWCCY 1 cut(s) 1026
Psp6I CCWGG 5 cut(s) 90, 538, 673, 741, 896
PspCI CACGTG 1 cut(s) 549
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 5 cut(s) 90, 538, 673, 741, 896
PspN4I GGNNCC 3 cut(s) 544, 890, 1028
PspPI GGNCC 5 cut(s) 302, 542, 935, 1026, 1052
PspPPI RGGWCCY 1 cut(s) 1026
RsaI GTAC 6 cut(s) 53, 644, 712, 851, 890, 949
RsaNI GTAC 6 cut(s) 52, 643, 711, 850, 889, 948
RseI CAYNNNNRTG 4 cut(s) 381, 411, 489, 1047
SacI GAGCTC 3 cut(s) 108, 918, 977
SaqAI TTAA 3 cut(s) 20, 78, 507
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 2 cut(s) 349, 598
Sau96I GGNCC 5 cut(s) 302, 542, 935, 1026, 1052
SchI GAGTC 3 cut(s) 80, 535, 1012
ScrFI CCNGG 5 cut(s) 92, 540, 675, 743, 898
SduI GDGCHC 3 cut(s) 108, 918, 977
SfaNI GCATC 7 cut(s) 69, 206, 266, 456, 468, 478, 825
SinI GGWCC 3 cut(s) 302, 542, 1026
SmiMI CAYNNNNRTG 4 cut(s) 381, 411, 489, 1047
SmlI CTYRAG 1 cut(s) 917
SmoI CTYRAG 1 cut(s) 917
Sse9I AATT 3 cut(s) 168, 553, 1057
SseBI AGGCCT 1 cut(s) 673
SsiI CCGC 3 cut(s) 189, 621, 730
SspMI CTAG 3 cut(s) 582, 1047, 1126
SstI GAGCTC 3 cut(s) 108, 918, 977
StuI AGGCCT 1 cut(s) 673
StyD4I CCNGG 5 cut(s) 90, 538, 673, 741, 896
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 3 cut(s) 245, 425, 737
TaiI ACGT 2 cut(s) 385, 551
TaqI TCGA 2 cut(s) 819, 977
TaqII GACCGA 1 cut(s) 290
TasI AATT 3 cut(s) 168, 553, 1057
TfiI GAWTC 3 cut(s) 163, 679, 837
Tru1I TTAA 3 cut(s) 20, 78, 507
Tru9I TTAA 3 cut(s) 20, 78, 507
TscAI CASTG 1 cut(s) 1011
TseFI GTSAC 2 cut(s) 419, 1006
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 2 cut(s) 419, 1006
TspDTI ATGAA 4 cut(s) 374, 578, 1068, 1085
TspGWI ACGGA 1 cut(s) 972
TspRI CASTG 1 cut(s) 1011
VpaK11BI GGWCC 3 cut(s) 302, 542, 1026
XapI RAATTY 1 cut(s) 1057
XceI RCATGY 2 cut(s) 52, 403
XmiI GTMKAC 1 cut(s) 766
XspI CTAG 3 cut(s) 582, 1047, 1126
Zsp2I ATGCAT 2 cut(s) 471, 818
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.