Rh5CG522700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0015586
Physical Location & Seq
Reverse (-)
73314352 .. 73316172
1821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG522700.1

Sequence Viewer

Length: 1020 bp
ATGGGGGATAAGGCAACATTAGCAAAGGCAAGAAAGGAGCTTGAAGATATGTATGAAGGCATACCAGATGACTCAGTGAACCTCACTTTCCAAGACTTTGCAGACCTCAGTATAAGCACTACTGCAGACAAGAGAAAACCCACTCACACTTTGGAATCCATTTCCGAACTCAAGTCCCCGAACCCCATGGCCAGACTTCCCAGCCTCGATTTCAACAGAGCCTTGCAAGCATCCAAGAACAATCACCGCATCAATGAAGACGTTGTTGACCCCTACAGAGGTAATCACCATCATCTTCATCACCAGAACAATCACTACCACCTCGACGCTAACAGTCACCGCGGCCATGCAGGCCAGGGAGGCCATCGATACGGTGGTGGCGATCATCATGGTGATCACCAAGGCCATAACTTTAATCATCATATGATGAGTGGTCATGGAGGAGTGGAGATGAGCAGCATAAGCATGGCTACTAGTACTACTTATGATCATCATGATGTGAGCGGCGTAAGCATGGCTTCGACTGCCGTGCACCAGCAAGATAGAGGTGGAAGGCGAAGGCCTGGGGTTCCTCACTCCAATATCTGCACCATTTGTAGTACCTACATCTATATTTTCCGCCATCGCTGCCTGGTTTGTGGAAGAGTGTATTGCAGGCAATGTGTGATGGTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCGTCCAGTGTCTAGGGAAGCGATTTAGCCAAAGGTACATACAAAGAGCAGGAAAGGTTGGATGTTGTTCAAGGTACCCTAGCGCGGTGAAGCAAGCAGAGCTCAAGTGGGCCGAGAAAGGGCCCAGAAGGTATGGTGGAAATGGGCCTTACGGTCACAGCACCATGGGAACACCCAGATCAAAAAGCCCAGTAACTCCAAGAACTCCACGGACCCCAATCAGGGCCCATGTTCCTCCTAGTCCTGGCCCAAATTCCTTTGTCACCAGTTCATCATACTCTCCTTATTCTCCCAGTCACCACCACCTTCCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

339

Amino Acids

37.69

Weight (kDa)

9.41

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 777
AccB1I GGYRCC 1 cut(s) 777
AccBSI CCGCTC 1 cut(s) 504
AccII CGCG 2 cut(s) 342, 788
AciI CCGC 6 cut(s) 247, 340, 342, 504, 619, 788
AcoI YGGCCR 2 cut(s) 189, 343
AcsI RAATTY 1 cut(s) 955
AfaI GTAC 4 cut(s) 478, 601, 740, 779
AfiI CCNNNNNNNGG 6 cut(s) 278, 787, 822, 924, 925, 947
AgsI TTSAA 3 cut(s) 44, 214, 774
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 4 cut(s) 354, 562, 630, 946
AluBI AGCT 2 cut(s) 40, 805
AluI AGCT 2 cut(s) 40, 805
Alw21I GWGCWC 2 cut(s) 534, 807
Alw44I GTGCAC 1 cut(s) 530
ApaI GGGCCC 2 cut(s) 828, 931
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 2 cut(s) 456, 627
ApoI RAATTY 1 cut(s) 955
Asp718I GGTACC 1 cut(s) 777
AspLEI GCGC 1 cut(s) 788
AspS9I GGNCC 8 cut(s) 813, 824, 825, 848, 915, 927, 928, 950
AsuHPI GGTGA 9 cut(s) 236, 278, 293, 329, 389, 404, 802, 958, 992
AvaII GGWCC 1 cut(s) 915
BaeGI GKGCMC 3 cut(s) 534, 828, 931
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 777
BanII GRGCYC 3 cut(s) 807, 828, 931
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 534, 807
BbvI GCAGC 2 cut(s) 468, 614
BccI CCATC 5 cut(s) 297, 372, 630, 661, 670
BceAI ACGGC 1 cut(s) 512
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 4 cut(s) 356, 564, 632, 948
BclI TGATCA 2 cut(s) 394, 487
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 5 cut(s) 474, 716, 783, 942, 1018
BfmI CTRYAG 2 cut(s) 123, 274
BglI GCCNNNNNGGC 2 cut(s) 351, 360
BisI GCNGC 4 cut(s) 343, 457, 505, 628
BlsI GCNGC 4 cut(s) 344, 458, 506, 629
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 4 cut(s) 356, 564, 632, 948
Bme18I GGWCC 1 cut(s) 915
BmgT120I GGNCC 8 cut(s) 813, 824, 825, 848, 915, 927, 928, 950
BmiI GGNNCC 5 cut(s) 570, 779, 826, 917, 929
BmrFI CCNGG 4 cut(s) 356, 564, 632, 948
BmrI ACTGGG 2 cut(s) 887, 990
BmsI GCATC 2 cut(s) 239, 258
BmuI ACTGGG 2 cut(s) 887, 990
BpiI GAAGAC 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 155, 791
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 867, 911
Bsc4I CCNNNNNNNGG 6 cut(s) 278, 787, 822, 924, 925, 947
Bse1I ACTGG 4 cut(s) 709, 893, 969, 996
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 4 cut(s) 356, 564, 632, 948
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 867, 911
BseGI GGATG 3 cut(s) 230, 681, 770
BseLI CCNNNNNNNGG 6 cut(s) 278, 787, 822, 924, 925, 947
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 87, 121
BseNI ACTGG 4 cut(s) 709, 893, 969, 996
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 3 cut(s) 534, 828, 931
BseXI GCAGC 2 cut(s) 468, 614
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 2 cut(s) 342, 788
BshNI GGYRCC 1 cut(s) 777
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 534, 807
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 6 cut(s) 278, 787, 822, 924, 925, 947
BsmFI GGGAC 1 cut(s) 160
Bsp120I GGGCCC 2 cut(s) 824, 927
Bsp1286I GDGCHC 4 cut(s) 534, 807, 828, 931
Bsp143I GATC 4 cut(s) 382, 394, 487, 881
Bsp19I CCATGG 2 cut(s) 186, 867
BspACI CCGC 6 cut(s) 247, 340, 342, 504, 619, 788
BspCNI CTCAG 2 cut(s) 86, 120
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 2 cut(s) 342, 788
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 5 cut(s) 570, 779, 826, 917, 929
BspMAI CTGCAG 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 777
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 4 cut(s) 709, 893, 969, 996
BssECI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 867, 911
BssMI GATC 4 cut(s) 382, 394, 487, 881
BssT1I CCWWGG 3 cut(s) 186, 400, 867
Bst2UI CCWGG 4 cut(s) 356, 564, 632, 948
Bst4CI ACNGT 3 cut(s) 335, 374, 857
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 4 cut(s) 228, 352, 656, 798
BstDEI CTNAG 2 cut(s) 73, 107
BstDSI CCRYGG 4 cut(s) 186, 340, 867, 911
BstF5I GGATG 3 cut(s) 230, 681, 770
BstFNI CGCG 2 cut(s) 342, 788
BstHHI GCGC 1 cut(s) 788
BstKTI GATC 4 cut(s) 385, 397, 490, 884
BstMBI GATC 4 cut(s) 382, 394, 487, 881
BstMWI GCNNNNNNNGC 9 cut(s) 20, 227, 351, 360, 462, 510, 524, 627, 802
BstNI CCWGG 4 cut(s) 356, 564, 632, 948
BstSCI CCNGG 4 cut(s) 354, 562, 630, 946
BstSFI CTRYAG 2 cut(s) 123, 274
BstSLI GKGCMC 3 cut(s) 534, 828, 931
BstUI CGCG 2 cut(s) 342, 788
BstV1I GCAGC 2 cut(s) 468, 614
BstV2I GAAGAC 1 cut(s) 264
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 4 cut(s) 186, 340, 867, 911
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 3 cut(s) 230, 681, 770
BtsIMutI CAGTG 2 cut(s) 81, 716
Cac8I GCNNGC 4 cut(s) 228, 352, 656, 798
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 788
Cfr13I GGNCC 8 cut(s) 813, 824, 825, 848, 915, 927, 928, 950
Cfr42I CCGCGG 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 2 cut(s) 335, 694
Csp6I GTAC 4 cut(s) 477, 600, 739, 778
CviAII CATG 9 cut(s) 187, 347, 389, 437, 466, 494, 514, 868, 932
CviQI GTAC 4 cut(s) 477, 600, 739, 778
DdeI CTNAG 2 cut(s) 73, 107
DpnI GATC 4 cut(s) 384, 396, 489, 883
DpnII GATC 4 cut(s) 382, 394, 487, 881
EaeI YGGCCR 2 cut(s) 189, 343
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 805
Eco130I CCWWGG 3 cut(s) 186, 400, 867
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 3 cut(s) 807, 828, 931
Eco47I GGWCC 1 cut(s) 915
Eco53kI GAGCTC 1 cut(s) 805
EcoICRI GAGCTC 1 cut(s) 805
EcoO109I RGGNCCY 2 cut(s) 824, 927
EcoRII CCWGG 4 cut(s) 354, 562, 630, 946
EcoT14I CCWWGG 3 cut(s) 186, 400, 867
EcoT38I GRGCYC 3 cut(s) 807, 828, 931
ErhI CCWWGG 3 cut(s) 186, 400, 867
FaeI CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 871, 935
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 1 cut(s) 160
FatI CATG 9 cut(s) 186, 346, 388, 436, 465, 493, 513, 867, 931
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 2 cut(s) 394, 487
Fnu4HI GCNGC 4 cut(s) 343, 457, 505, 628
FokI GGATG 3 cut(s) 217, 688, 777
FriOI GRGCYC 3 cut(s) 807, 828, 931
Fsp4HI GCNGC 4 cut(s) 343, 457, 505, 628
FspBI CTAG 5 cut(s) 474, 716, 783, 942, 1018
GlaI GCGC 1 cut(s) 787
GluI GCNGC 4 cut(s) 343, 457, 505, 628
GsaI CCCAGC 1 cut(s) 204
HgaI GACGC 2 cut(s) 335, 694
HhaI GCGC 1 cut(s) 788
Hin1II CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 871, 935
Hin6I GCGC 1 cut(s) 786
HinP1I GCGC 1 cut(s) 786
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 71, 155
HphI GGTGA 9 cut(s) 236, 278, 293, 329, 389, 404, 802, 958, 992
Hpy166II GTNNAC 3 cut(s) 79, 268, 532
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 3 cut(s) 79, 268, 532
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 50, 546, 552, 686, 825, 1019
HpyCH4III ACNGT 3 cut(s) 335, 374, 857
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 7 cut(s) 101, 125, 226, 350, 532, 588, 654
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 227, 351, 360, 462, 510, 524, 627, 802
HpyF3I CTNAG 2 cut(s) 73, 107
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 871, 935
HspAI GCGC 1 cut(s) 786
KpnI GGTACC 1 cut(s) 781
Ksp22I TGATCA 2 cut(s) 394, 487
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 4 cut(s) 382, 394, 487, 881
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 2 cut(s) 468, 614
LweI GCATC 2 cut(s) 239, 258
MaeI CTAG 5 cut(s) 474, 716, 783, 942, 1018
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 5 cut(s) 335, 857, 895, 964, 998
MalI GATC 4 cut(s) 384, 396, 489, 883
MbiI CCGCTC 1 cut(s) 504
MboI GATC 4 cut(s) 382, 394, 487, 881
MboII GAAGA 4 cut(s) 56, 269, 287, 654
MhlI GDGCHC 4 cut(s) 534, 807, 828, 931
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 955
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 742
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 3 cut(s) 390, 464, 495
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 342
MspR9I CCNGG 4 cut(s) 356, 564, 632, 948
MvaI CCWGG 4 cut(s) 356, 564, 632, 948
MvnI CGCG 2 cut(s) 342, 788
MwoI GCNNNNNNNGC 9 cut(s) 20, 227, 351, 360, 462, 510, 524, 627, 802
NcoI CCATGG 2 cut(s) 186, 867
NdeI CATATG 1 cut(s) 423
NdeII GATC 4 cut(s) 382, 394, 487, 881
NlaIII CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 871, 935
NlaIV GGNNCC 5 cut(s) 570, 779, 826, 917, 929
NmeAIII GCCGAG 1 cut(s) 841
NmuCI GTSAC 4 cut(s) 335, 857, 964, 998
PagI TCATGA 1 cut(s) 493
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 4 cut(s) 344, 458, 506, 629
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 807
Psp6I CCWGG 4 cut(s) 354, 562, 630, 946
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 4 cut(s) 354, 562, 630, 946
PspN4I GGNNCC 5 cut(s) 570, 779, 826, 917, 929
PspOMI GGGCCC 2 cut(s) 824, 927
PspPI GGNCC 8 cut(s) 813, 824, 825, 848, 915, 927, 928, 950
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 4 cut(s) 478, 601, 740, 779
RsaNI GTAC 4 cut(s) 477, 600, 739, 778
RseI CAYNNNNRTG 3 cut(s) 390, 464, 495
SacI GAGCTC 1 cut(s) 807
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 4 cut(s) 343, 457, 505, 628
Sau3AI GATC 4 cut(s) 382, 394, 487, 881
Sau96I GGNCC 8 cut(s) 813, 824, 825, 848, 915, 927, 928, 950
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 4 cut(s) 356, 564, 632, 948
SduI GDGCHC 4 cut(s) 534, 807, 828, 931
SfaNI GCATC 2 cut(s) 239, 258
SfcI CTRYAG 2 cut(s) 123, 274
SfiI GGCCNNNNNGGCC 2 cut(s) 351, 360
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SinI GGWCC 1 cut(s) 915
SmiMI CAYNNNNRTG 3 cut(s) 390, 464, 495
SmlI CTYRAG 2 cut(s) 170, 806
SmoI CTYRAG 2 cut(s) 170, 806
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 1 cut(s) 955
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 6 cut(s) 247, 340, 342, 504, 619, 788
SspMI CTAG 5 cut(s) 474, 716, 783, 942, 1018
SstI GAGCTC 1 cut(s) 807
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 4 cut(s) 354, 562, 630, 946
StyI CCWWGG 3 cut(s) 186, 400, 867
TaaI ACNGT 3 cut(s) 335, 374, 857
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 207, 324, 367, 521
TasI AATT 1 cut(s) 955
TatI WGTACW 1 cut(s) 476
TauI GCSGC 2 cut(s) 345, 507
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 81, 716
TseFI GTSAC 4 cut(s) 335, 857, 964, 998
TseI GCWGC 2 cut(s) 456, 627
Tsp45I GTSAC 4 cut(s) 335, 857, 964, 998
TspDTI ATGAA 4 cut(s) 69, 270, 287, 963
TspGWI ACGGA 1 cut(s) 928
TspRI CASTG 2 cut(s) 81, 716
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 915
XapI RAATTY 1 cut(s) 955
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 371
XspI CTAG 5 cut(s) 474, 716, 783, 942, 1018
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.