RchiOBHm_Chr5g0073191

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015586
Physical Location & Seq
Reverse (-)
79275827 .. 79276854
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34810

Sequence Viewer

Length: 819 bp
ATGGGGGACAAGGCAACATTAGCAAAGGCAAGAAAGGAGCTTGAAGATATGTATGAAGGCATACCAGATGACTCAGTGAACCTCACTTTCCAAGACTTTGCAGACCTCAGTATAAGCACTACTGCAGACAAGAGAAAACCCACTCACACTTTGGAATCCATTTCCGAATTCAAGTCCCAGAACCCCATGGCCAGACTTCCTAGCCTCGATTTCAACAGAGCCTTGCAAGCATCCAAGAACAACCACCGCATCAACGAAGACGTTGTTGACCCCTACAGAGGTAATCACCATAATCTTCATCACCAGAACAATCACTACCACCTCGACGCTAATAGTCACCGCGGCCATGCAGGCCAGGGAGGCCATCGATACGGTGGTGGCGATCATCATGGTGATGACCAAGGCCATAACTTTAATCATCATATGATGAGTGGTCATGGAGGAGTGGAGATGAGTAGCATAAGCATGGCTACTAGTACTACTTATGATCATCATGATGTGAGCGGCGTAAGCATGGCTTCGACTGCCGTGCACCAGCAAGATAGAGGTGGAAGGCGAAGGCCTGGGGTTCCTCACTCCAATATCTGCACCATTTGTAGTACCTACATCTATATTTTCCGCCATCGCTGCCTGGTTTGTGGAAGAGTGTATTGCAGGCAATGTGTGATGGTAGGGATGGGAGAAATGACAGAAGGTAGAAAATGCGTCCAGTGTCTTGGGAGGCGATTTAGCCAAAGGTATGTGGTTTTGTTAGAAACACATACTTCTCCGACGAGTATAGAAAATGCGTTTTCTAATTATCGAAACAATTTTAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.62

Weight (kDa)

7.76

Isoelectric Point (pI)

39.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 504
AccII CGCG 1 cut(s) 342
AciI CCGC 5 cut(s) 247, 340, 342, 504, 619
AcoI YGGCCR 2 cut(s) 189, 343
AcsI RAATTY 1 cut(s) 167
AfaI GTAC 2 cut(s) 478, 601
AfiI CCNNNNNNNGG 1 cut(s) 278
AgsI TTSAA 3 cut(s) 44, 172, 214
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 3 cut(s) 354, 562, 630
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 534
Alw44I GTGCAC 1 cut(s) 530
AoxI GGCC 6 cut(s) 189, 343, 352, 361, 403, 560
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 627
ApoI RAATTY 1 cut(s) 167
AsuHPI GGTGA 4 cut(s) 278, 293, 329, 404
BaeGI GKGCMC 1 cut(s) 534
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BalI TGGCCA 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 534
BbvI GCAGC 1 cut(s) 614
BccI CCATC 4 cut(s) 372, 630, 661, 670
BceAI ACGGC 1 cut(s) 512
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 3 cut(s) 356, 564, 632
BclI TGATCA 1 cut(s) 487
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 3 cut(s) 201, 474, 817
BfmI CTRYAG 2 cut(s) 123, 274
BglI GCCNNNNNGGC 2 cut(s) 351, 360
BisI GCNGC 3 cut(s) 343, 505, 628
BlsI GCNGC 3 cut(s) 344, 506, 629
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 356, 564, 632
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 356, 564, 632
BmsI GCATC 2 cut(s) 239, 258
BpiI GAAGAC 1 cut(s) 264
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 665
BseBI CCWGG 3 cut(s) 356, 564, 632
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
BseGI GGATG 2 cut(s) 230, 681
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 665
BseMII CTCAG 2 cut(s) 87, 121
BseNI ACTGG 1 cut(s) 709
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 614
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 342
BshFI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 1 cut(s) 534
BslFI GGGAC 2 cut(s) 20, 160
BslI CCNNNNNNNGG 1 cut(s) 278
BsmFI GGGAC 2 cut(s) 20, 160
BsnI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 2 cut(s) 382, 487
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 5 cut(s) 247, 340, 342, 504, 619
BspANI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BspCNI CTCAG 2 cut(s) 86, 120
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 1 cut(s) 342
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 1 cut(s) 570
BspMAI CTGCAG 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 504
BsrDI GCAATG 1 cut(s) 665
BsrI ACTGG 1 cut(s) 709
BssECI CCNNGG 5 cut(s) 186, 340, 355, 400, 563
BssMI GATC 2 cut(s) 382, 487
BssT1I CCWWGG 2 cut(s) 186, 400
Bst2UI CCWGG 3 cut(s) 356, 564, 632
Bst4CI ACNGT 1 cut(s) 374
Bst6I CTCTTC 1 cut(s) 637
BstC8I GCNNGC 3 cut(s) 228, 352, 656
BstDEI CTNAG 2 cut(s) 73, 107
BstDSI CCRYGG 2 cut(s) 186, 340
BstF5I GGATG 2 cut(s) 230, 681
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 2 cut(s) 385, 490
BstMBI GATC 2 cut(s) 382, 487
BstMWI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 627
BstNI CCWGG 3 cut(s) 356, 564, 632
BstSCI CCNGG 3 cut(s) 354, 562, 630
BstSFI CTRYAG 2 cut(s) 123, 274
BstSLI GKGCMC 1 cut(s) 534
BstUI CGCG 1 cut(s) 342
BstV1I GCAGC 1 cut(s) 614
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 716
Bsu15I ATCGAT 1 cut(s) 367
BsuRI GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 2 cut(s) 186, 340
BtgZI GCGATG 1 cut(s) 608
BtsCI GGATG 2 cut(s) 230, 681
BtsIMutI CAGTG 2 cut(s) 81, 716
Cac8I GCNNGC 3 cut(s) 228, 352, 656
CciI TCATGA 1 cut(s) 493
Cfr42I CCGCGG 1 cut(s) 343
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 2 cut(s) 335, 694
Csp6I GTAC 2 cut(s) 477, 600
CviAII CATG 7 cut(s) 187, 347, 389, 437, 466, 494, 514
CviQI GTAC 2 cut(s) 477, 600
DdeI CTNAG 2 cut(s) 73, 107
DpnI GATC 2 cut(s) 384, 489
DpnII GATC 2 cut(s) 382, 487
EaeI YGGCCR 2 cut(s) 189, 343
Eam1104I CTCTTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 637
EciI GGCGGA 1 cut(s) 608
Eco130I CCWWGG 2 cut(s) 186, 400
Eco147I AGGCCT 1 cut(s) 562
EcoRI GAATTC 1 cut(s) 167
EcoRII CCWGG 3 cut(s) 354, 562, 630
EcoT14I CCWWGG 2 cut(s) 186, 400
ErhI CCWWGG 2 cut(s) 186, 400
FaeI CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 2 cut(s) 20, 160
FatI CATG 7 cut(s) 186, 346, 388, 436, 465, 493, 513
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 1 cut(s) 487
Fnu4HI GCNGC 3 cut(s) 343, 505, 628
FokI GGATG 2 cut(s) 217, 688
Fsp4HI GCNGC 3 cut(s) 343, 505, 628
FspBI CTAG 3 cut(s) 201, 474, 817
GluI GCNGC 3 cut(s) 343, 505, 628
HaeIII GGCC 6 cut(s) 191, 345, 354, 363, 405, 562
HgaI GACGC 2 cut(s) 335, 694
Hin1II CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 71, 155
HphI GGTGA 4 cut(s) 278, 293, 329, 404
Hpy166II GTNNAC 3 cut(s) 79, 268, 532
Hpy188I TCNGA 2 cut(s) 166, 771
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 3 cut(s) 79, 268, 532
Hpy99I CGWCG 2 cut(s) 329, 775
HpyAV CCTTC 4 cut(s) 50, 546, 552, 686
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 7 cut(s) 101, 125, 226, 350, 532, 588, 654
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 627
HpyF3I CTNAG 2 cut(s) 73, 107
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
Ksp22I TGATCA 1 cut(s) 487
KspI CCGCGG 1 cut(s) 343
Kzo9I GATC 2 cut(s) 382, 487
LmnI GCTCC 1 cut(s) 37
Lsp1109I GCAGC 1 cut(s) 614
LweI GCATC 2 cut(s) 239, 258
MaeI CTAG 3 cut(s) 201, 474, 817
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 1 cut(s) 335
MalI GATC 2 cut(s) 384, 489
MbiI CCGCTC 1 cut(s) 504
MboI GATC 2 cut(s) 382, 487
MboII GAAGA 4 cut(s) 56, 269, 287, 654
MhlI GDGCHC 1 cut(s) 534
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 3 cut(s) 167, 796, 808
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 794
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 2 cut(s) 414, 813
MslI CAYNNNNRTG 4 cut(s) 390, 393, 464, 495
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 342
MspR9I CCNGG 3 cut(s) 356, 564, 632
MvaI CCWGG 3 cut(s) 356, 564, 632
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 627
NcoI CCATGG 1 cut(s) 186
NdeI CATATG 1 cut(s) 423
NdeII GATC 2 cut(s) 382, 487
NlaIII CATG 7 cut(s) 190, 350, 392, 440, 469, 497, 517
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 1 cut(s) 335
PagI TCATGA 1 cut(s) 493
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 3 cut(s) 344, 506, 629
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp6I CCWGG 3 cut(s) 354, 562, 630
PspGI CCWGG 3 cut(s) 354, 562, 630
PspN4I GGNNCC 1 cut(s) 570
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 2 cut(s) 478, 601
RsaNI GTAC 2 cut(s) 477, 600
RseI CAYNNNNRTG 4 cut(s) 390, 393, 464, 495
SacII CCGCGG 1 cut(s) 343
SaqAI TTAA 2 cut(s) 414, 813
SatI GCNGC 3 cut(s) 343, 505, 628
Sau3AI GATC 2 cut(s) 382, 487
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 356, 564, 632
SduI GDGCHC 1 cut(s) 534
SfaNI GCATC 2 cut(s) 239, 258
SfcI CTRYAG 2 cut(s) 123, 274
SfiI GGCCNNNNNGGCC 2 cut(s) 351, 360
Sfr303I CCGCGG 1 cut(s) 343
SgrBI CCGCGG 1 cut(s) 343
SmiMI CAYNNNNRTG 4 cut(s) 390, 393, 464, 495
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 3 cut(s) 167, 796, 808
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 5 cut(s) 247, 340, 342, 504, 619
SspMI CTAG 3 cut(s) 201, 474, 817
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 354, 562, 630
StyI CCWWGG 2 cut(s) 186, 400
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 1 cut(s) 264
TaqI TCGA 5 cut(s) 207, 324, 367, 521, 802
TasI AATT 3 cut(s) 167, 796, 808
TatI WGTACW 1 cut(s) 476
TauI GCSGC 2 cut(s) 345, 507
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 414, 813
Tru9I TTAA 2 cut(s) 414, 813
TscAI CASTG 2 cut(s) 81, 716
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 1 cut(s) 627
Tsp45I GTSAC 1 cut(s) 335
TspDTI ATGAA 2 cut(s) 69, 287
TspRI CASTG 2 cut(s) 81, 716
VneI GTGCAC 1 cut(s) 530
XapI RAATTY 1 cut(s) 167
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 371
XspI CTAG 3 cut(s) 201, 474, 817
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.