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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g40511 |
| malus_domestica | MD03G1051700.v1.1 MD11G1053800.v1.1 |
| prunus_persica | Prupe.6G041100_v2.0.a1 |
| pyrus_communis | pycom11g04340 |
| rosa_chinensis | RchiOBHm_Chr5g0073191 |
| rosa_laevigata | RLG00000036372 |
| rosa_multiflora | Rmu_sc0001887.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00008000 |
| rosa_rugosa | Rorug05G0421900 |
| rosa_samantha | Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600 |
| rosa_wichuraiana | Rw5G044500 Rw5G044510 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 894 |
| AccB1I | GGYRCC | 1 cut(s) | 894 |
| AccBSI | CCGCTC | 1 cut(s) | 627 |
| AciI | CCGC | 5 cut(s) | 325, 340, 459, 627, 736 |
| AclWI | GGATC | 2 cut(s) | 209, 222 |
| AcoI | YGGCCR | 2 cut(s) | 502, 973 |
| AcsI | RAATTY | 1 cut(s) | 1063 |
| AcvI | CACGTG | 1 cut(s) | 434 |
| AcyI | GRCGYC | 1 cut(s) | 1016 |
| AfaI | GTAC | 5 cut(s) | 104, 650, 718, 857, 896 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 52, 748, 963, 1043 |
| AflIII | ACRYGT | 1 cut(s) | 99 |
| AgsI | TTSAA | 3 cut(s) | 28, 95, 292 |
| AjiI | CACGTC | 1 cut(s) | 613 |
| AjnI | CCWGG | 4 cut(s) | 141, 544, 679, 747 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 563, 595 |
| AluBI | AGCT | 6 cut(s) | 91, 157, 512, 591, 922, 981 |
| AluI | AGCT | 6 cut(s) | 91, 157, 512, 591, 922, 981 |
| Alw21I | GWGCWC | 3 cut(s) | 159, 924, 983 |
| Alw26I | GTCTC | 2 cut(s) | 309, 578 |
| AlwI | GGATC | 2 cut(s) | 209, 222 |
| AoxI | GGCC | 7 cut(s) | 20, 502, 677, 941, 973, 1045, 1057 |
| ApeKI | GCWGC | 2 cut(s) | 428, 509 |
| ApoI | RAATTY | 1 cut(s) | 1063 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 348, 380 |
| AseI | ATTAAT | 1 cut(s) | 206 |
| Asp718I | GGTACC | 1 cut(s) | 894 |
| AspLEI | GCGC | 1 cut(s) | 956 |
| AspS9I | GGNCC | 6 cut(s) | 21, 374, 548, 941, 1032, 1058 |
| AsuHPI | GGTGA | 4 cut(s) | 259, 401, 476, 1077 |
| AvaII | GGWCC | 3 cut(s) | 374, 548, 1032 |
| BalI | TGGCCA | 1 cut(s) | 504 |
| BamHI | GGATCC | 1 cut(s) | 214 |
| BanI | GGYRCC | 1 cut(s) | 894 |
| BanII | GRGCYC | 3 cut(s) | 159, 924, 983 |
| BbrPI | CACGTG | 1 cut(s) | 434 |
| BbsI | GAAGAC | 1 cut(s) | 102 |
| Bbv12I | GWGCWC | 3 cut(s) | 159, 924, 983 |
| BbvI | GCAGC | 2 cut(s) | 440, 521 |
| BccI | CCATC | 6 cut(s) | 46, 477, 486, 494, 778, 787 |
| BceAI | ACGGC | 1 cut(s) | 988 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 973, 1007 |
| BciT130I | CCWGG | 4 cut(s) | 143, 546, 681, 749 |
| BclI | TGATCA | 3 cut(s) | 400, 520, 604 |
| BcoDI | GTCTC | 2 cut(s) | 309, 578 |
| BfaI | CTAG | 3 cut(s) | 588, 1053, 1114 |
| BfoI | RGCGCY | 1 cut(s) | 957 |
| BisI | GCNGC | 2 cut(s) | 429, 510 |
| BlsI | GCNGC | 2 cut(s) | 430, 511 |
| Bme1390I | CCNGG | 4 cut(s) | 143, 546, 681, 749 |
| Bme18I | GGWCC | 3 cut(s) | 374, 548, 1032 |
| BmgBI | CACGTC | 1 cut(s) | 613 |
| BmgT120I | GGNCC | 6 cut(s) | 21, 374, 548, 941, 1032, 1058 |
| BmiI | GGNNCC | 4 cut(s) | 216, 550, 896, 1034 |
| BmrFI | CCNGG | 4 cut(s) | 143, 546, 681, 749 |
| BmsI | GCATC | 5 cut(s) | 120, 257, 317, 474, 496 |
| BpiI | GAAGAC | 1 cut(s) | 102 |
| BpuEI | CTTGAG | 2 cut(s) | 874, 908 |
| BsaAI | YACGTR | 1 cut(s) | 434 |
| BsaHI | GRCGYC | 1 cut(s) | 1016 |
| BsaJI | CCNNGG | 3 cut(s) | 106, 680, 1028 |
| BsaWI | WCCGGW | 1 cut(s) | 563 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 832, 862 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 52, 748, 963, 1043 |
| Bse118I | RCCGGY | 2 cut(s) | 18, 956 |
| Bse1I | ACTGG | 2 cut(s) | 216, 903 |
| Bse3DI | GCAATG | 1 cut(s) | 967 |
| BseBI | CCWGG | 4 cut(s) | 143, 546, 681, 749 |
| BseDI | CCNNGG | 3 cut(s) | 106, 680, 1028 |
| BseGI | GGATG | 3 cut(s) | 111, 308, 798 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 52, 748, 963, 1043 |
| BseMI | GCAATG | 1 cut(s) | 967 |
| BseMII | CTCAG | 1 cut(s) | 924 |
| BseNI | ACTGG | 2 cut(s) | 216, 903 |
| BseRI | GAGGAG | 2 cut(s) | 678, 853 |
| BseX3I | CGGCCG | 1 cut(s) | 973 |
| BseXI | GCAGC | 2 cut(s) | 440, 521 |
| BseYI | CCCAGC | 1 cut(s) | 278 |
| BsgI | GTGCAG | 1 cut(s) | 688 |
| Bsh1285I | CGRYCG | 3 cut(s) | 19, 448, 976 |
| BshFI | GGCC | 7 cut(s) | 22, 504, 679, 943, 975, 1047, 1059 |
| BshNI | GGYRCC | 1 cut(s) | 894 |
| BsiEI | CGRYCG | 3 cut(s) | 19, 448, 976 |
| BsiHKAI | GWGCWC | 3 cut(s) | 159, 924, 983 |
| BsiSI | CCGG | 4 cut(s) | 19, 564, 957, 976 |
| BslFI | GGGAC | 3 cut(s) | 71, 350, 534 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 52, 748, 963, 1043 |
| BsmAI | GTCTC | 2 cut(s) | 309, 578 |
| BsmFI | GGGAC | 3 cut(s) | 71, 350, 534 |
| BsnI | GGCC | 7 cut(s) | 22, 504, 679, 943, 975, 1047, 1059 |
| Bsp1286I | GDGCHC | 3 cut(s) | 159, 924, 983 |
| Bsp143I | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| BspACI | CCGC | 5 cut(s) | 325, 340, 459, 627, 736 |
| BspANI | GGCC | 7 cut(s) | 22, 504, 679, 943, 975, 1047, 1059 |
| BspCNI | CTCAG | 1 cut(s) | 925 |
| BspHI | TCATGA | 2 cut(s) | 496, 607 |
| BspLI | GGNNCC | 4 cut(s) | 216, 550, 896, 1034 |
| BspPI | GGATC | 2 cut(s) | 209, 222 |
| BspT107I | GGYRCC | 1 cut(s) | 894 |
| BsrBI | CCGCTC | 1 cut(s) | 627 |
| BsrDI | GCAATG | 1 cut(s) | 967 |
| BsrFI | RCCGGY | 2 cut(s) | 18, 956 |
| BsrI | ACTGG | 2 cut(s) | 216, 903 |
| BssAI | RCCGGY | 2 cut(s) | 18, 956 |
| BssECI | CCNNGG | 3 cut(s) | 106, 680, 1028 |
| BssMI | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| BssNI | GRCGYC | 1 cut(s) | 1016 |
| BssT1I | CCWWGG | 1 cut(s) | 106 |
| Bst2UI | CCWGG | 4 cut(s) | 143, 546, 681, 749 |
| Bst4CI | ACNGT | 4 cut(s) | 47, 296, 446, 743 |
| Bst6I | CTCTTC | 1 cut(s) | 754 |
| BstACI | GRCGYC | 1 cut(s) | 1016 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 711 |
| BstBAI | YACGTR | 1 cut(s) | 434 |
| BstC8I | GCNNGC | 4 cut(s) | 306, 426, 915, 958 |
| BstDEI | CTNAG | 1 cut(s) | 933 |
| BstEII | GGTNACC | 1 cut(s) | 464 |
| BstF5I | GGATG | 3 cut(s) | 111, 308, 798 |
| BstH2I | RGCGCY | 1 cut(s) | 957 |
| BstHHI | GCGC | 1 cut(s) | 956 |
| BstKTI | GATC | 5 cut(s) | 217, 403, 523, 607, 1001 |
| BstMAI | GTCTC | 2 cut(s) | 309, 578 |
| BstMBI | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| BstMCI | CGRYCG | 3 cut(s) | 19, 448, 976 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 305, 633, 711, 744, 919, 966 |
| BstNI | CCWGG | 4 cut(s) | 143, 546, 681, 749 |
| BstNSI | RCATGY | 2 cut(s) | 103, 428 |
| BstPI | GGTNACC | 1 cut(s) | 464 |
| BstSCI | CCNGG | 4 cut(s) | 141, 544, 679, 747 |
| BstV1I | GCAGC | 2 cut(s) | 440, 521 |
| BstV2I | GAAGAC | 1 cut(s) | 102 |
| BstX2I | RGATCY | 1 cut(s) | 214 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1055 |
| BstYI | RGATCY | 1 cut(s) | 214 |
| BstZI | CGGCCG | 1 cut(s) | 973 |
| BsuRI | GGCC | 7 cut(s) | 22, 504, 679, 943, 975, 1047, 1059 |
| BtgZI | GCGATG | 2 cut(s) | 790, 1079 |
| BtrI | CACGTC | 1 cut(s) | 613 |
| BtsCI | GGATG | 3 cut(s) | 111, 308, 798 |
| BtsIMutI | CAGTG | 1 cut(s) | 910 |
| Cac8I | GCNNGC | 4 cut(s) | 306, 426, 915, 958 |
| CciI | TCATGA | 2 cut(s) | 496, 607 |
| CfoI | GCGC | 1 cut(s) | 956 |
| Cfr10I | RCCGGY | 2 cut(s) | 18, 956 |
| Cfr13I | GGNCC | 6 cut(s) | 21, 374, 548, 941, 1032, 1058 |
| CseI | GACGC | 1 cut(s) | 1024 |
| Csp6I | GTAC | 5 cut(s) | 103, 649, 717, 856, 895 |
| CviQI | GTAC | 5 cut(s) | 103, 649, 717, 856, 895 |
| DdeI | CTNAG | 1 cut(s) | 933 |
| DpnI | GATC | 5 cut(s) | 216, 402, 522, 606, 1000 |
| DpnII | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| EaeI | YGGCCR | 2 cut(s) | 502, 973 |
| EagI | CGGCCG | 1 cut(s) | 973 |
| Eam1104I | CTCTTC | 1 cut(s) | 754 |
| EarI | CTCTTC | 1 cut(s) | 754 |
| EciI | GGCGGA | 1 cut(s) | 725 |
| Ecl136II | GAGCTC | 3 cut(s) | 157, 922, 981 |
| EclXI | CGGCCG | 1 cut(s) | 973 |
| Eco130I | CCWWGG | 1 cut(s) | 106 |
| Eco147I | AGGCCT | 1 cut(s) | 679 |
| Eco24I | GRGCYC | 3 cut(s) | 159, 924, 983 |
| Eco47I | GGWCC | 3 cut(s) | 374, 548, 1032 |
| Eco52I | CGGCCG | 1 cut(s) | 973 |
| Eco53kI | GAGCTC | 3 cut(s) | 157, 922, 981 |
| Eco72I | CACGTG | 1 cut(s) | 434 |
| Eco91I | GGTNACC | 1 cut(s) | 464 |
| EcoICRI | GAGCTC | 3 cut(s) | 157, 922, 981 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1032 |
| EcoO65I | GGTNACC | 1 cut(s) | 464 |
| EcoRII | CCWGG | 4 cut(s) | 141, 544, 679, 747 |
| EcoT14I | CCWWGG | 1 cut(s) | 106 |
| EcoT22I | ATGCAT | 1 cut(s) | 489 |
| EcoT38I | GRGCYC | 3 cut(s) | 159, 924, 983 |
| ErhI | CCWWGG | 1 cut(s) | 106 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 625, 657, 883, 915 |
| FaqI | GGGAC | 3 cut(s) | 71, 350, 534 |
| FauNDI | CATATG | 2 cut(s) | 379, 528 |
| FbaI | TGATCA | 3 cut(s) | 400, 520, 604 |
| Fnu4HI | GCNGC | 2 cut(s) | 429, 510 |
| FokI | GGATG | 3 cut(s) | 98, 295, 805 |
| FriOI | GRGCYC | 3 cut(s) | 159, 924, 983 |
| Fsp4HI | GCNGC | 2 cut(s) | 429, 510 |
| FspBI | CTAG | 3 cut(s) | 588, 1053, 1114 |
| GlaI | GCGC | 1 cut(s) | 955 |
| GluI | GCNGC | 2 cut(s) | 429, 510 |
| GsaI | CCCAGC | 1 cut(s) | 282 |
| HaeII | RGCGCY | 1 cut(s) | 957 |
| HaeIII | GGCC | 7 cut(s) | 22, 504, 679, 943, 975, 1047, 1059 |
| HapII | CCGG | 4 cut(s) | 19, 564, 957, 976 |
| HgaI | GACGC | 1 cut(s) | 1024 |
| HhaI | GCGC | 1 cut(s) | 956 |
| Hin1I | GRCGYC | 1 cut(s) | 1016 |
| Hin6I | GCGC | 1 cut(s) | 954 |
| HinP1I | GCGC | 1 cut(s) | 954 |
| HincII | GTYRAC | 1 cut(s) | 130 |
| HindII | GTYRAC | 1 cut(s) | 130 |
| HinfI | GANTC | 4 cut(s) | 122, 685, 843, 1024 |
| HpaI | GTTAAC | 1 cut(s) | 130 |
| HpaII | CCGG | 4 cut(s) | 19, 564, 957, 976 |
| HphI | GGTGA | 4 cut(s) | 259, 401, 476, 1077 |
| Hpy166II | GTNNAC | 2 cut(s) | 13, 130 |
| Hpy188I | TCNGA | 5 cut(s) | 51, 181, 226, 483, 1029 |
| Hpy188III | TCNNGA | 4 cut(s) | 312, 497, 608, 1075 |
| Hpy8I | GTNNAC | 2 cut(s) | 13, 130 |
| Hpy99I | CGWCG | 1 cut(s) | 374 |
| HpyAV | CCTTC | 6 cut(s) | 34, 669, 803, 868, 909, 1115 |
| HpyCH4III | ACNGT | 4 cut(s) | 47, 296, 446, 743 |
| HpyCH4IV | ACGT | 3 cut(s) | 433, 612, 989 |
| HpyCH4V | TGCA | 7 cut(s) | 152, 304, 428, 487, 509, 705, 714 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 305, 633, 711, 744, 919, 966 |
| HpyF3I | CTNAG | 1 cut(s) | 933 |
| HpySE526I | ACGT | 3 cut(s) | 433, 612, 989 |
| Hsp92I | GRCGYC | 1 cut(s) | 1016 |
| HspAI | GCGC | 1 cut(s) | 954 |
| KpnI | GGTACC | 1 cut(s) | 898 |
| KroI | GCCGGC | 1 cut(s) | 956 |
| KroNI | GCCGGC | 1 cut(s) | 958 |
| Ksp22I | TGATCA | 3 cut(s) | 400, 520, 604 |
| KspAI | GTTAAC | 1 cut(s) | 130 |
| Kzo9I | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| LmnI | GCTCC | 2 cut(s) | 88, 978 |
| Lsp1109I | GCAGC | 2 cut(s) | 440, 521 |
| LweI | GCATC | 5 cut(s) | 120, 257, 317, 474, 496 |
| MaeI | CTAG | 3 cut(s) | 588, 1053, 1114 |
| MaeII | ACGT | 3 cut(s) | 433, 612, 989 |
| MaeIII | GTNAC | 3 cut(s) | 172, 440, 464 |
| MalI | GATC | 5 cut(s) | 216, 402, 522, 606, 1000 |
| MbiI | CCGCTC | 1 cut(s) | 627 |
| MboI | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| MboII | GAAGA | 4 cut(s) | 107, 199, 771, 960 |
| MflI | RGATCY | 1 cut(s) | 214 |
| MhlI | GDGCHC | 3 cut(s) | 159, 924, 983 |
| MlsI | TGGCCA | 1 cut(s) | 504 |
| MluCI | AATT | 4 cut(s) | 406, 559, 1063, 1078 |
| MluNI | TGGCCA | 1 cut(s) | 504 |
| MlyI | GAGTC | 2 cut(s) | 131, 1018 |
| MnlI | CCTC | 7 cut(s) | 268, 431, 656, 659, 831, 1023, 1037 |
| Mox20I | TGGCCA | 1 cut(s) | 504 |
| Mph1103I | ATGCAT | 1 cut(s) | 489 |
| MroNI | GCCGGC | 1 cut(s) | 956 |
| MscI | TGGCCA | 1 cut(s) | 504 |
| MseI | TTAA | 2 cut(s) | 129, 206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 417, 423, 495, 1053 |
| Msp20I | TGGCCA | 1 cut(s) | 504 |
| MspI | CCGG | 4 cut(s) | 19, 564, 957, 976 |
| MspR9I | CCNGG | 4 cut(s) | 143, 546, 681, 749 |
| MvaI | CCWGG | 4 cut(s) | 143, 546, 681, 749 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 305, 633, 711, 744, 919, 966 |
| NaeI | GCCGGC | 1 cut(s) | 958 |
| NdeI | CATATG | 2 cut(s) | 379, 528 |
| NdeII | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| NgoMIV | GCCGGC | 1 cut(s) | 956 |
| NlaIV | GGNNCC | 4 cut(s) | 216, 550, 896, 1034 |
| NmeAIII | GCCGAG | 2 cut(s) | 969, 1020 |
| NmuCI | GTSAC | 2 cut(s) | 440, 464 |
| NsiI | ATGCAT | 1 cut(s) | 489 |
| NspI | RCATGY | 2 cut(s) | 103, 428 |
| PaeI | GCATGC | 1 cut(s) | 428 |
| PagI | TCATGA | 2 cut(s) | 496, 607 |
| PceI | AGGCCT | 1 cut(s) | 679 |
| PciI | ACATGT | 1 cut(s) | 99 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 12 |
| PdiI | GCCGGC | 1 cut(s) | 958 |
| PfeI | GAWTC | 2 cut(s) | 685, 843 |
| PfoI | TCCNGGA | 1 cut(s) | 141 |
| PkrI | GCNGC | 2 cut(s) | 430, 511 |
| PleI | GAGTC | 2 cut(s) | 130, 1018 |
| PmaCI | CACGTG | 1 cut(s) | 434 |
| PmlI | CACGTG | 1 cut(s) | 434 |
| PpsI | GAGTC | 2 cut(s) | 130, 1018 |
| Ppu21I | YACGTR | 1 cut(s) | 434 |
| PpuMI | RGGWCCY | 1 cut(s) | 1032 |
| PscI | ACATGT | 1 cut(s) | 99 |
| PshBI | ATTAAT | 1 cut(s) | 206 |
| Psp124BI | GAGCTC | 3 cut(s) | 159, 924, 983 |
| Psp5II | RGGWCCY | 1 cut(s) | 1032 |
| Psp6I | CCWGG | 4 cut(s) | 141, 544, 679, 747 |
| PspCI | CACGTG | 1 cut(s) | 434 |
| PspEI | GGTNACC | 1 cut(s) | 464 |
| PspFI | CCCAGC | 1 cut(s) | 278 |
| PspGI | CCWGG | 4 cut(s) | 141, 544, 679, 747 |
| PspN4I | GGNNCC | 4 cut(s) | 216, 550, 896, 1034 |
| PspPI | GGNCC | 6 cut(s) | 21, 374, 548, 941, 1032, 1058 |
| PspPPI | RGGWCCY | 1 cut(s) | 1032 |
| PsuI | RGATCY | 1 cut(s) | 214 |
| RsaI | GTAC | 5 cut(s) | 104, 650, 718, 857, 896 |
| RsaNI | GTAC | 5 cut(s) | 103, 649, 717, 856, 895 |
| RseI | CAYNNNNRTG | 4 cut(s) | 417, 423, 495, 1053 |
| SacI | GAGCTC | 3 cut(s) | 159, 924, 983 |
| SaqAI | TTAA | 2 cut(s) | 129, 206 |
| SatI | GCNGC | 2 cut(s) | 429, 510 |
| Sau3AI | GATC | 5 cut(s) | 214, 400, 520, 604, 998 |
| Sau96I | GGNCC | 6 cut(s) | 21, 374, 548, 941, 1032, 1058 |
| SchI | GAGTC | 2 cut(s) | 131, 1018 |
| ScrFI | CCNGG | 4 cut(s) | 143, 546, 681, 749 |
| SduI | GDGCHC | 3 cut(s) | 159, 924, 983 |
| SfaNI | GCATC | 5 cut(s) | 120, 257, 317, 474, 496 |
| SinI | GGWCC | 3 cut(s) | 374, 548, 1032 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 417, 423, 495, 1053 |
| SmlI | CTYRAG | 2 cut(s) | 889, 923 |
| SmoI | CTYRAG | 2 cut(s) | 889, 923 |
| SphI | GCATGC | 1 cut(s) | 428 |
| Sse9I | AATT | 4 cut(s) | 406, 559, 1063, 1078 |
| SseBI | AGGCCT | 1 cut(s) | 679 |
| SsiI | CCGC | 5 cut(s) | 325, 340, 459, 627, 736 |
| SspMI | CTAG | 3 cut(s) | 588, 1053, 1114 |
| SstI | GAGCTC | 3 cut(s) | 159, 924, 983 |
| StuI | AGGCCT | 1 cut(s) | 679 |
| StyD4I | CCNGG | 4 cut(s) | 141, 544, 679, 747 |
| StyI | CCWWGG | 1 cut(s) | 106 |
| TaaI | ACNGT | 4 cut(s) | 47, 296, 446, 743 |
| TaiI | ACGT | 3 cut(s) | 436, 615, 992 |
| TaqI | TCGA | 3 cut(s) | 6, 448, 983 |
| TaqII | GACCGA | 1 cut(s) | 362 |
| TasI | AATT | 4 cut(s) | 406, 559, 1063, 1078 |
| TfiI | GAWTC | 2 cut(s) | 685, 843 |
| Tru1I | TTAA | 2 cut(s) | 129, 206 |
| Tru9I | TTAA | 2 cut(s) | 129, 206 |
| TscAI | CASTG | 1 cut(s) | 910 |
| TseFI | GTSAC | 2 cut(s) | 440, 464 |
| TseI | GCWGC | 2 cut(s) | 428, 509 |
| Tsp45I | GTSAC | 2 cut(s) | 440, 464 |
| TspDTI | ATGAA | 2 cut(s) | 545, 584 |
| TspGWI | ACGGA | 1 cut(s) | 591 |
| TspRI | CASTG | 1 cut(s) | 910 |
| VpaK11BI | GGWCC | 3 cut(s) | 374, 548, 1032 |
| VspI | ATTAAT | 1 cut(s) | 206 |
| XapI | RAATTY | 1 cut(s) | 1063 |
| XceI | RCATGY | 2 cut(s) | 103, 428 |
| XspI | CTAG | 3 cut(s) | 588, 1053, 1114 |
| Zsp2I | ATGCAT | 1 cut(s) | 489 |