Rmu_sc0001887.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001887.1
OG0015586
Physical Location & Seq
Reverse (-)
42866 .. 44670
1805 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001887.1_g000011.1.cds

Sequence Viewer

Length: 942 bp
atgggggataaggcaacattagcaaaggcaagaaaggagcttgaagatatgtatgaaggcataccagatgactcagtgaacctcactttccaagactttgcagacctcagtataagcactactgcagacaagagaaaacccactcacactttggaatccatttccgaactcaagtccccgaaccccatggccagacttcccagcctcgatttcaacagagccttgcaagcatccaagaacaaccaccgcatcaacgaagacgttgttgacccctacagaggtaatcaccatcatcttcatcaccagaacaatcactaccacctcgacgctaacagtcaccgtggccatgcaggccagggaggccatcgatacggtggtggcgatcatcatggtgatcaccaaggccataactttaatcatcatatgatgagtggtcatggaggagtggagatgagtagcataagcatggctactagtactacttatgatcatcatgatgtgagcggcgtaagcatggcttcgactgccgtgcaccagcaagatagaggtggaaggcgaaggcctggggttcctcactccaatatctgcaccatttggatgggagaaatgacagaaggtagaaaatgcgtccagtgtctagggaagcgatttagccaaaggtacatacaaagagcaggaaaggttggatgttgttcaaggtaccctagcgcggtgaagcaagcagagctcaagtgggccgagaaagggcccagaaggtatggtggaaatgggccttacggtcacagcaccatgggaacacccagatcaaaaagcccagtaactccaagaactccacggaccccaatcagggcccatgttcctcctagtcctggcccaaattcctttgtcaccagttcatcatactctccttattctcccagtcaccaccaccttcctttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

34.66

Weight (kDa)

9.43

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015586)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g40511
malus_domestica MD03G1051700.v1.1 MD11G1053800.v1.1
prunus_persica Prupe.6G041100_v2.0.a1
pyrus_communis pycom11g04340
rosa_chinensis RchiOBHm_Chr5g0073191
rosa_laevigata RLG00000036372
rosa_multiflora Rmu_sc0001887.1_g000011
rosa_roxburghii Rroxscaffold_1G00008000
rosa_rugosa Rorug05G0421900
rosa_samantha Rh5AG478800 Rh5BG499500 Rh5CG522700 Rh5DG511600
rosa_wichuraiana Rw5G044500 Rw5G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 699
AccB1I GGYRCC 1 cut(s) 699
AccBSI CCGCTC 1 cut(s) 504
AccII CGCG 1 cut(s) 710
AciI CCGC 3 cut(s) 247, 504, 710
AcoI YGGCCR 2 cut(s) 189, 343
AcsI RAATTY 1 cut(s) 877
AfaI GTAC 3 cut(s) 478, 662, 701
AfiI CCNNNNNNNGG 6 cut(s) 278, 709, 744, 846, 847, 869
AgsI TTSAA 3 cut(s) 44, 214, 696
AhlI ACTAGT 1 cut(s) 473
AjnI CCWGG 3 cut(s) 354, 562, 868
AluBI AGCT 2 cut(s) 40, 727
AluI AGCT 2 cut(s) 40, 727
Alw21I GWGCWC 2 cut(s) 534, 729
Alw44I GTGCAC 1 cut(s) 530
ApaI GGGCCC 2 cut(s) 750, 853
ApaLI GTGCAC 1 cut(s) 530
ApoI RAATTY 1 cut(s) 877
Asp718I GGTACC 1 cut(s) 699
AspLEI GCGC 1 cut(s) 710
AspS9I GGNCC 8 cut(s) 735, 746, 747, 770, 837, 849, 850, 872
AsuHPI GGTGA 8 cut(s) 278, 293, 329, 389, 404, 724, 880, 914
AvaII GGWCC 1 cut(s) 837
BaeGI GKGCMC 3 cut(s) 534, 750, 853
BaeI ACNNNNGTAYC 2 cut(s) 361, 394
BalI TGGCCA 2 cut(s) 191, 345
BanI GGYRCC 1 cut(s) 699
BanII GRGCYC 3 cut(s) 729, 750, 853
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 2 cut(s) 534, 729
BccI CCATC 3 cut(s) 297, 372, 592
BceAI ACGGC 1 cut(s) 512
BcgI CGANNNNNNTGC 2 cut(s) 511, 545
BciT130I CCWGG 3 cut(s) 356, 564, 870
BclI TGATCA 2 cut(s) 394, 487
BcuI ACTAGT 1 cut(s) 473
BfaI CTAG 5 cut(s) 474, 638, 705, 864, 940
BfmI CTRYAG 2 cut(s) 123, 274
BglI GCCNNNNNGGC 2 cut(s) 351, 360
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
BmcAI AGTACT 1 cut(s) 478
Bme1390I CCNGG 3 cut(s) 356, 564, 870
Bme18I GGWCC 1 cut(s) 837
BmgT120I GGNCC 8 cut(s) 735, 746, 747, 770, 837, 849, 850, 872
BmiI GGNNCC 5 cut(s) 570, 701, 748, 839, 851
BmrFI CCNGG 3 cut(s) 356, 564, 870
BmrI ACTGGG 2 cut(s) 809, 912
BmsI GCATC 2 cut(s) 239, 258
BmuI ACTGGG 2 cut(s) 809, 912
BpiI GAAGAC 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 155, 713
Bsa29I ATCGAT 1 cut(s) 367
BsaJI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 789, 833
Bsc4I CCNNNNNNNGG 6 cut(s) 278, 709, 744, 846, 847, 869
Bse1I ACTGG 4 cut(s) 631, 815, 891, 918
BseBI CCWGG 3 cut(s) 356, 564, 870
BseCI ATCGAT 1 cut(s) 367
BseDI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 789, 833
BseGI GGATG 3 cut(s) 230, 603, 692
BseLI CCNNNNNNNGG 6 cut(s) 278, 709, 744, 846, 847, 869
BseMII CTCAG 2 cut(s) 87, 121
BseNI ACTGG 4 cut(s) 631, 815, 891, 918
BseRI GAGGAG 1 cut(s) 456
BseSI GKGCMC 3 cut(s) 534, 750, 853
BseYI CCCAGC 1 cut(s) 200
BsgI GTGCAG 1 cut(s) 571
Bsh1236I CGCG 1 cut(s) 710
BshNI GGYRCC 1 cut(s) 699
BshVI ATCGAT 1 cut(s) 367
BsiHKAI GWGCWC 2 cut(s) 534, 729
BslFI GGGAC 1 cut(s) 160
BslI CCNNNNNNNGG 6 cut(s) 278, 709, 744, 846, 847, 869
BsmFI GGGAC 1 cut(s) 160
Bsp120I GGGCCC 2 cut(s) 746, 849
Bsp1286I GDGCHC 4 cut(s) 534, 729, 750, 853
Bsp143I GATC 4 cut(s) 382, 394, 487, 803
Bsp19I CCATGG 2 cut(s) 186, 789
BspACI CCGC 3 cut(s) 247, 504, 710
BspCNI CTCAG 2 cut(s) 86, 120
BspDI ATCGAT 1 cut(s) 367
BspFNI CGCG 1 cut(s) 710
BspHI TCATGA 1 cut(s) 493
BspLI GGNNCC 5 cut(s) 570, 701, 748, 839, 851
BspMAI CTGCAG 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 699
BsrBI CCGCTC 1 cut(s) 504
BsrI ACTGG 4 cut(s) 631, 815, 891, 918
BssECI CCNNGG 7 cut(s) 186, 340, 355, 400, 563, 789, 833
BssMI GATC 4 cut(s) 382, 394, 487, 803
BssT1I CCWWGG 3 cut(s) 186, 400, 789
Bst2UI CCWGG 3 cut(s) 356, 564, 870
Bst4CI ACNGT 4 cut(s) 335, 341, 374, 779
BstC8I GCNNGC 3 cut(s) 228, 352, 720
BstDEI CTNAG 2 cut(s) 73, 107
BstDSI CCRYGG 4 cut(s) 186, 340, 789, 833
BstF5I GGATG 3 cut(s) 230, 603, 692
BstFNI CGCG 1 cut(s) 710
BstHHI GCGC 1 cut(s) 710
BstKTI GATC 4 cut(s) 385, 397, 490, 806
BstMBI GATC 4 cut(s) 382, 394, 487, 803
BstMWI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 724
BstNI CCWGG 3 cut(s) 356, 564, 870
BstSCI CCNGG 3 cut(s) 354, 562, 868
BstSFI CTRYAG 2 cut(s) 123, 274
BstSLI GKGCMC 3 cut(s) 534, 750, 853
BstUI CGCG 1 cut(s) 710
BstV2I GAAGAC 1 cut(s) 264
BstXI CCANNNNNNTGG 1 cut(s) 598
Bsu15I ATCGAT 1 cut(s) 367
BsuTUI ATCGAT 1 cut(s) 367
BtgI CCRYGG 4 cut(s) 186, 340, 789, 833
BtsCI GGATG 3 cut(s) 230, 603, 692
BtsIMutI CAGTG 2 cut(s) 81, 638
Cac8I GCNNGC 3 cut(s) 228, 352, 720
CciI TCATGA 1 cut(s) 493
CfoI GCGC 1 cut(s) 710
Cfr13I GGNCC 8 cut(s) 735, 746, 747, 770, 837, 849, 850, 872
ClaI ATCGAT 1 cut(s) 367
CseI GACGC 2 cut(s) 335, 616
Csp6I GTAC 3 cut(s) 477, 661, 700
CviAII CATG 9 cut(s) 187, 347, 389, 437, 466, 494, 514, 790, 854
CviQI GTAC 3 cut(s) 477, 661, 700
DdeI CTNAG 2 cut(s) 73, 107
DpnI GATC 4 cut(s) 384, 396, 489, 805
DpnII GATC 4 cut(s) 382, 394, 487, 803
EaeI YGGCCR 2 cut(s) 189, 343
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 3 cut(s) 186, 400, 789
Eco147I AGGCCT 1 cut(s) 562
Eco24I GRGCYC 3 cut(s) 729, 750, 853
Eco47I GGWCC 1 cut(s) 837
Eco53kI GAGCTC 1 cut(s) 727
EcoICRI GAGCTC 1 cut(s) 727
EcoO109I RGGNCCY 2 cut(s) 746, 849
EcoRII CCWGG 3 cut(s) 354, 562, 868
EcoT14I CCWWGG 3 cut(s) 186, 400, 789
EcoT38I GRGCYC 3 cut(s) 729, 750, 853
ErhI CCWWGG 3 cut(s) 186, 400, 789
FaeI CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 793, 857
FalI AAGNNNNNCTT 2 cut(s) 502, 534
FaqI GGGAC 1 cut(s) 160
FatI CATG 9 cut(s) 186, 346, 388, 436, 465, 493, 513, 789, 853
FauNDI CATATG 1 cut(s) 423
FbaI TGATCA 2 cut(s) 394, 487
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 3 cut(s) 217, 610, 699
FriOI GRGCYC 3 cut(s) 729, 750, 853
Fsp4HI GCNGC 1 cut(s) 505
FspBI CTAG 5 cut(s) 474, 638, 705, 864, 940
GlaI GCGC 1 cut(s) 709
GluI GCNGC 1 cut(s) 505
GsaI CCCAGC 1 cut(s) 204
HgaI GACGC 2 cut(s) 335, 616
HhaI GCGC 1 cut(s) 710
Hin1II CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 793, 857
Hin6I GCGC 1 cut(s) 708
HinP1I GCGC 1 cut(s) 708
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 2 cut(s) 71, 155
HphI GGTGA 8 cut(s) 278, 293, 329, 389, 404, 724, 880, 914
Hpy166II GTNNAC 3 cut(s) 79, 268, 532
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 494
Hpy8I GTNNAC 3 cut(s) 79, 268, 532
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 6 cut(s) 50, 546, 552, 608, 747, 941
HpyCH4III ACNGT 4 cut(s) 335, 341, 374, 779
HpyCH4IV ACGT 1 cut(s) 261
HpyCH4V TGCA 6 cut(s) 101, 125, 226, 350, 532, 588
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 724
HpyF3I CTNAG 2 cut(s) 73, 107
HpySE526I ACGT 1 cut(s) 261
Hsp92II CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 793, 857
HspAI GCGC 1 cut(s) 708
KpnI GGTACC 1 cut(s) 703
Ksp22I TGATCA 2 cut(s) 394, 487
Kzo9I GATC 4 cut(s) 382, 394, 487, 803
LmnI GCTCC 1 cut(s) 37
LweI GCATC 2 cut(s) 239, 258
MaeI CTAG 5 cut(s) 474, 638, 705, 864, 940
MaeII ACGT 1 cut(s) 261
MaeIII GTNAC 5 cut(s) 335, 779, 817, 886, 920
MalI GATC 4 cut(s) 384, 396, 489, 805
MbiI CCGCTC 1 cut(s) 504
MboI GATC 4 cut(s) 382, 394, 487, 803
MboII GAAGA 3 cut(s) 56, 269, 287
MhlI GDGCHC 4 cut(s) 534, 729, 750, 853
MlsI TGGCCA 2 cut(s) 191, 345
MluCI AATT 1 cut(s) 877
MluNI TGGCCA 2 cut(s) 191, 345
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 664
Mox20I TGGCCA 2 cut(s) 191, 345
MscI TGGCCA 2 cut(s) 191, 345
MseI TTAA 1 cut(s) 414
MslI CAYNNNNRTG 4 cut(s) 390, 464, 495, 596
Msp20I TGGCCA 2 cut(s) 191, 345
MspR9I CCNGG 3 cut(s) 356, 564, 870
MvaI CCWGG 3 cut(s) 356, 564, 870
MvnI CGCG 1 cut(s) 710
MwoI GCNNNNNNNGC 7 cut(s) 20, 227, 351, 360, 510, 524, 724
NcoI CCATGG 2 cut(s) 186, 789
NdeI CATATG 1 cut(s) 423
NdeII GATC 4 cut(s) 382, 394, 487, 803
NlaIII CATG 9 cut(s) 190, 350, 392, 440, 469, 497, 517, 793, 857
NlaIV GGNNCC 5 cut(s) 570, 701, 748, 839, 851
NmeAIII GCCGAG 1 cut(s) 763
NmuCI GTSAC 4 cut(s) 335, 779, 886, 920
PagI TCATGA 1 cut(s) 493
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 1 cut(s) 506
PleI GAGTC 1 cut(s) 65
PpsI GAGTC 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 729
Psp6I CCWGG 3 cut(s) 354, 562, 868
PspFI CCCAGC 1 cut(s) 200
PspGI CCWGG 3 cut(s) 354, 562, 868
PspN4I GGNNCC 5 cut(s) 570, 701, 748, 839, 851
PspOMI GGGCCC 2 cut(s) 746, 849
PspPI GGNCC 8 cut(s) 735, 746, 747, 770, 837, 849, 850, 872
PsrI GAACNNNNNNTAC 2 cut(s) 299, 331
PstI CTGCAG 1 cut(s) 127
RsaI GTAC 3 cut(s) 478, 662, 701
RsaNI GTAC 3 cut(s) 477, 661, 700
RseI CAYNNNNRTG 4 cut(s) 390, 464, 495, 596
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 1 cut(s) 414
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 4 cut(s) 382, 394, 487, 803
Sau96I GGNCC 8 cut(s) 735, 746, 747, 770, 837, 849, 850, 872
ScaI AGTACT 1 cut(s) 478
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 3 cut(s) 356, 564, 870
SduI GDGCHC 4 cut(s) 534, 729, 750, 853
SfaNI GCATC 2 cut(s) 239, 258
SfcI CTRYAG 2 cut(s) 123, 274
SfiI GGCCNNNNNGGCC 2 cut(s) 351, 360
SinI GGWCC 1 cut(s) 837
SmiMI CAYNNNNRTG 4 cut(s) 390, 464, 495, 596
SmlI CTYRAG 2 cut(s) 170, 728
SmoI CTYRAG 2 cut(s) 170, 728
SpeI ACTAGT 1 cut(s) 473
Sse9I AATT 1 cut(s) 877
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 3 cut(s) 247, 504, 710
SspMI CTAG 5 cut(s) 474, 638, 705, 864, 940
SstI GAGCTC 1 cut(s) 729
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 354, 562, 868
StyI CCWWGG 3 cut(s) 186, 400, 789
TaaI ACNGT 4 cut(s) 335, 341, 374, 779
TaiI ACGT 1 cut(s) 264
TaqI TCGA 4 cut(s) 207, 324, 367, 521
TasI AATT 1 cut(s) 877
TatI WGTACW 1 cut(s) 476
TauI GCSGC 1 cut(s) 507
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TscAI CASTG 2 cut(s) 81, 638
TseFI GTSAC 4 cut(s) 335, 779, 886, 920
Tsp45I GTSAC 4 cut(s) 335, 779, 886, 920
TspDTI ATGAA 3 cut(s) 69, 287, 885
TspGWI ACGGA 1 cut(s) 850
TspRI CASTG 2 cut(s) 81, 638
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 837
XapI RAATTY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 2 cut(s) 148, 371
XspI CTAG 5 cut(s) 474, 638, 705, 864, 940
ZrmI AGTACT 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.