Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015587

Physical Location & Seq

Genomic Coordinates Reverse (-)

34930775 .. 34932310

Gene Structure 1536 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g41600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGGATATGGAGCACCAAGAGATCACTAACCCTGACATCACTGAGAGCAACAACAACAATGGTGGAGGACTTCTGATCAAGCTCAAGATGGCAAAGGCTGAACCCTTTTCGGAACAAGGTAATCGAAAACCTGAAACCCTAGCTCCTAGATTCACTAAAATATGTCATATCTGCCAGAAAGGGTTTGAGTCCGGGAAAGCTTTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAAGGGACTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGAATAGTGCCACTGAATTATTCAGTACTAGTGCTACTGATTCAGGTGGTGAACATGTTTGCATAGAGTGTGGTAAGATTTTTCCGTCGAAGAAATCACTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGGATTGAGCCTCCTACTCAGTTTTCCAAGAACAGCTCCACCTCAACTTTATCTGATGCTTTGCCTCAAAAACCCAATTTAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAGTGTGGTTCGGGCCTAATCCGAAAGCGGTACGTGATCTGGTTAAGGTTGTGCCTAGCTGGTCTAAAACTGCGAAAAGAGGTAGGAAAGGTACTAGCAGTCTTGATTCTGAAACCGACTCGGAGAGTGACGATGATGATTGTGCTGATGATGAGGATGAGGAGTTGGATATGAGTGAAGCAGTCCATGATCTGATGATGTTAGCTCAAGCCAATCCAAAAGGAGCTGAGGAGGCCACTAACAGCAATTTCATGACCAAGAACAACCAGGATCATGATGTCAAGGACATAAGGGTAATTGACTATCTGGGTGTAGCCAAGAAGAGGAAGAAGCTTGAAATTGAGGAGGATGGGGATCTAGAGAAGCCTAGGAATCAATTGGAGCTGGGATTGGATTTGAAATATGACAGTGAAGAGGAGCTATCGGATAGCGAAAACTCGGAGAGCATTGTGCTTGCAAACATGATGAAGAGGAAGAAGAGGAGGAAGATGAAATTGGAAGACTTGGATGGAGCAGTGGTTGTAGATCATCAACATCAAAGCCATCACCACAAGGTTTATACTTGCAGTCTTTGCAACAAGTCATTCCAAAGCCACCAAGCATTGGGAGGACACATGTCAAGCCACAACAAGCTCAAGAACAACAACAACAGCAACAACATCCAGTACTCTGCGGAACACGATCATCATCATCAATCTGGTTCTGAAGATACTAATAATGCAAATGCTAATCTCACAAACACAGCCACTCAAATTGACCATGATCAAGCTGAAAGTCACCAATGCAGAATCTGCAACAGGACTTTTCTAACAGGTCAAGCATTGGGGGGTCACATGAGGTCTCACTGGAACGGTCAAAATGATCAAGCTCAATCAAGCCAGACCGGGCGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCACCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGCTGGTTATGCAACTTCTTCTTATAATTCAATCAATTTAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

512

Amino Acids

56.74

Weight (kDa)

5.82

Isoelectric Point (pI)

45.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	54 - 75	1.1e-06	C2H2-type zinc finger
zf-C2H2_6	PF13912	363 - 388	1.5e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	437 - 460	2.9e-08	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41600
malus_domestica	MD03G1043000.v1.1 MD11G1046000.v1.1
prunus_persica	Prupe.6G035400_v2.0.a1
pyrus_communis	pycom03g03320 pycom11g03730
rosa_chinensis	RchiOBHm_Chr5g0074621
rosa_laevigata	RLG00000036491
rosa_multiflora	Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006960
rosa_rugosa	Rorug05G0433300
rosa_samantha	Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1515
AccB7I	CCANNNNNTGG	1 cut(s)	1135
AciI	CCGC	2 cut(s)	560, 1205
AclWI	GGATC	3 cut(s)	510, 810, 894
AcuI	CTGAAG	1 cut(s)	1257
AfaI	GTAC	4 cut(s)	301, 564, 625, 1199
AfiI	CCNNNNNNNGG	3 cut(s)	413, 855, 1135
AflIII	ACRYGT	2 cut(s)	328, 1146
AgsI	TTSAA	3 cut(s)	869, 931, 1521
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	798
AjuI	GAANNNNNNNTTGG	2 cut(s)	1010, 1042
Alw21I	GWGCWC	2 cut(s)	15, 257
Alw26I	GTCTC	1 cut(s)	1377
AlwI	GGATC	3 cut(s)	510, 810, 894
AlwNI	CAGNNNCTG	1 cut(s)	1323
Ama87I	CYCGRG	1 cut(s)	531
AoxI	GGCC	4 cut(s)	404, 545, 765, 1426
AspA2I	CCTAGG	1 cut(s)	899
AspLEI	GCGC	1 cut(s)	1422
AspS9I	GGNCC	1 cut(s)	545
AsuC2I	CCSGG	3 cut(s)	193, 398, 1417
AsuHPI	GGTGA	3 cut(s)	335, 1070, 1301
AsuII	TTCGAA	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	531
AvrII	CCTAGG	1 cut(s)	899
BanII	GRGCYC	1 cut(s)	257
BbsI	GAAGAC	1 cut(s)	1038
Bbv12I	GWGCWC	2 cut(s)	15, 257
BbvCI	CCTCAGC	2 cut(s)	498, 759
BccI	CCATC	4 cut(s)	82, 875, 1034, 1083
BcgI	CGANNNNNNTGC	2 cut(s)	1411, 1445
BciT130I	CCWGG	1 cut(s)	800
BclI	TGATCA	4 cut(s)	75, 246, 1294, 1393
BcnI	CCSGG	3 cut(s)	193, 398, 1417
BcoDI	GTCTC	1 cut(s)	1377
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	7 cut(s)	140, 147, 303, 588, 627, 890, 900
BlnI	CCTAGG	1 cut(s)	899
BmcAI	AGTACT	2 cut(s)	301, 1199
Bme1390I	CCNGG	4 cut(s)	193, 398, 800, 1417
BmeT110I	CYCGRG	1 cut(s)	531
BmgT120I	GGNCC	1 cut(s)	545
BmrFI	CCNGG	4 cut(s)	193, 398, 800, 1417
BmsI	GCATC	1 cut(s)	460
BoxI	GACNNNNGTC	1 cut(s)	1147
BpiI	GAAGAC	1 cut(s)	1038
BpmI	CTGGAG	1 cut(s)	1509
Bpu10I	CCTNAGC	2 cut(s)	498, 759
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	3 cut(s)	68, 723, 1151
BpuMI	CCSGG	3 cut(s)	193, 398, 1417
BsaAI	YACGTR	1 cut(s)	566
BsaBI	GATNNNNATC	2 cut(s)	885, 1218
BsaI	GGTCTC	1 cut(s)	1377
BsaJI	CCNNGG	1 cut(s)	899
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 1035, 1065
Bsc4I	CCNNNNNNNGG	3 cut(s)	413, 855, 1135
Bse1I	ACTGG	2 cut(s)	1195, 1382
Bse8I	GATNNNNATC	2 cut(s)	885, 1218
BseBI	CCWGG	1 cut(s)	800
BseDI	CCNNGG	1 cut(s)	899
BseGI	GGATG	4 cut(s)	694, 886, 1045, 1191
BseJI	GATNNNNATC	2 cut(s)	885, 1218
BseLI	CCNNNNNNNGG	3 cut(s)	413, 855, 1135
BseMII	CTCAG	4 cut(s)	33, 446, 489, 750
BseNI	ACTGG	2 cut(s)	1195, 1382
BseRI	GAGGAG	5 cut(s)	707, 776, 890, 962, 1027
BseYI	CCCAGC	2 cut(s)	521, 916
BshFI	GGCC	4 cut(s)	406, 547, 767, 1428
BsiHKAI	GWGCWC	2 cut(s)	15, 257
BsiHKCI	CYCGRG	1 cut(s)	531
BsiSI	CCGG	3 cut(s)	192, 398, 1416
BslFI	GGGAC	2 cut(s)	255, 538
BslI	CCNNNNNNNGG	3 cut(s)	413, 855, 1135
BsmAI	GTCTC	1 cut(s)	1377
BsmFI	GGGAC	2 cut(s)	255, 538
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	4 cut(s)	406, 547, 767, 1428
Bso31I	GGTCTC	1 cut(s)	1377
BsoBI	CYCGRG	1 cut(s)	531
Bsp119I	TTCGAA	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	15, 257
BspACI	CCGC	2 cut(s)	560, 1205
BspANI	GGCC	4 cut(s)	406, 547, 767, 1428
BspCNI	CTCAG	4 cut(s)	34, 445, 490, 751
BspHI	TCATGA	2 cut(s)	783, 805
BspPI	GGATC	3 cut(s)	510, 810, 894
BspQI	GCTCTTC	1 cut(s)	262
BspT104I	TTCGAA	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	1377
BsrI	ACTGG	2 cut(s)	1195, 1382
BssECI	CCNNGG	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	800
Bst4CI	ACNGT	2 cut(s)	941, 1385
Bst6I	CTCTTC	5 cut(s)	262, 848, 939, 995, 1004
BstAPI	GCANNNNNTGC	2 cut(s)	1104, 1323
BstBAI	YACGTR	1 cut(s)	566
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	987
BstDEI	CTNAG	4 cut(s)	42, 432, 498, 759
BstF5I	GGATG	4 cut(s)	694, 886, 1045, 1191
BstHHI	GCGC	1 cut(s)	1422
BstMAI	GTCTC	1 cut(s)	1377
BstMWI	GCNNNNNNNGC	5 cut(s)	527, 764, 1104, 1323, 1499
BstNI	CCWGG	1 cut(s)	800
BstNSI	RCATGY	3 cut(s)	227, 332, 1150
BstPAI	GACNNNNGTC	1 cut(s)	1147
BstSCI	CCNGG	4 cut(s)	191, 396, 798, 1415
BstV2I	GAAGAC	1 cut(s)	1038
BstX2I	RGATCY	1 cut(s)	886
BstYI	RGATCY	1 cut(s)	886
BsuRI	GGCC	4 cut(s)	406, 547, 767, 1428
BtsCI	GGATG	4 cut(s)	694, 886, 1045, 1191
BtsI	GCAGTG	1 cut(s)	1053
BtsIMutI	CAGTG	5 cut(s)	39, 285, 946, 1053, 1375
Cac8I	GCNNGC	1 cut(s)	987
CaiI	CAGNNNCTG	1 cut(s)	1323
CciI	TCATGA	2 cut(s)	783, 805
CfoI	GCGC	1 cut(s)	1422
Cfr13I	GGNCC	1 cut(s)	545
Csp6I	GTAC	4 cut(s)	300, 563, 624, 1198
CspCI	CAANNNNNGTGG	4 cut(s)	43, 78, 1267, 1302
CviQI	GTAC	4 cut(s)	300, 563, 624, 1198
DdeI	CTNAG	4 cut(s)	42, 432, 498, 759
Eam1104I	CTCTTC	5 cut(s)	262, 848, 939, 995, 1004
EarI	CTCTTC	5 cut(s)	262, 848, 939, 995, 1004
Ecl136II	GAGCTC	1 cut(s)	255
Eco130I	CCWWGG	1 cut(s)	899
Eco147I	AGGCCT	2 cut(s)	406, 1428
Eco24I	GRGCYC	1 cut(s)	257
Eco31I	GGTCTC	1 cut(s)	1377
Eco53kI	GAGCTC	1 cut(s)	255
Eco57I	CTGAAG	1 cut(s)	1257
Eco88I	CYCGRG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	899
EcoT22I	ATGCAT	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	899
FaqI	GGGAC	2 cut(s)	255, 538
FbaI	TGATCA	4 cut(s)	75, 246, 1294, 1393
FokI	GGATG	4 cut(s)	701, 893, 1052, 1178
FriOI	GRGCYC	1 cut(s)	257
FspBI	CTAG	7 cut(s)	140, 147, 303, 588, 627, 890, 900
GlaI	GCGC	1 cut(s)	1421
GsaI	CCCAGC	2 cut(s)	525, 920
GsuI	CTGGAG	1 cut(s)	1509
HaeIII	GGCC	4 cut(s)	406, 547, 767, 1428
HapII	CCGG	3 cut(s)	192, 398, 1416
HhaI	GCGC	1 cut(s)	1422
Hin6I	GCGC	1 cut(s)	1420
HinP1I	GCGC	1 cut(s)	1420
HindIII	AAGCTT	2 cut(s)	198, 863
HinfI	GANTC	8 cut(s)	150, 188, 314, 515, 638, 650, 904, 1320
HpaII	CCGG	3 cut(s)	192, 398, 1416
HphI	GGTGA	3 cut(s)	335, 1070, 1301
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188III	TCNNGA	8 cut(s)	85, 250, 635, 784, 806, 890, 1168, 1488
Hpy8I	GTNNAC	1 cut(s)	326
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	941, 1385
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	9 cut(s)	223, 336, 989, 1098, 1107, 1253, 1317, 1326, 1502
HpyF10VI	GCNNNNNNNGC	5 cut(s)	527, 764, 1104, 1323, 1499
HpyF3I	CTNAG	4 cut(s)	42, 432, 498, 759
HpySE526I	ACGT	1 cut(s)	565
HspAI	GCGC	1 cut(s)	1420
Ksp22I	TGATCA	4 cut(s)	75, 246, 1294, 1393
LguI	GCTCTTC	1 cut(s)	262
LmnI	GCTCC	8 cut(s)	10, 148, 455, 755, 913, 949, 1043, 1490
LweI	GCATC	1 cut(s)	460
MaeI	CTAG	7 cut(s)	140, 147, 303, 588, 627, 890, 900
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	5 cut(s)	209, 390, 659, 1307, 1361
MfeI	CAATTG	1 cut(s)	908
MflI	RGATCY	1 cut(s)	886
MhlI	GDGCHC	2 cut(s)	15, 257
MlyI	GAGTC	2 cut(s)	197, 644
MmeI	TCCRAC	1 cut(s)	678
Mph1103I	ATGCAT	1 cut(s)	225
MseI	TTAA	2 cut(s)	576, 1529
MslI	CAYNNNNRTG	1 cut(s)	218
MspI	CCGG	3 cut(s)	192, 398, 1416
MspR9I	CCNGG	4 cut(s)	193, 398, 800, 1417
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	800
MwoI	GCNNNNNNNGC	5 cut(s)	527, 764, 1104, 1323, 1499
NciI	CCSGG	3 cut(s)	193, 398, 1417
NmuCI	GTSAC	5 cut(s)	209, 390, 659, 1307, 1361
NsiI	ATGCAT	1 cut(s)	225
NspI	RCATGY	3 cut(s)	227, 332, 1150
NspV	TTCGAA	1 cut(s)	260
PaeR7I	CTCGAG	1 cut(s)	531
PagI	TCATGA	2 cut(s)	783, 805
PceI	AGGCCT	2 cut(s)	406, 1428
PciI	ACATGT	2 cut(s)	328, 1146
PciSI	GCTCTTC	1 cut(s)	262
PcsI	WCGNNNNNNNCGW	1 cut(s)	266
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	6 cut(s)	150, 314, 515, 638, 904, 1320
PflMI	CCANNNNNTGG	1 cut(s)	1135
PfoI	TCCNGGA	1 cut(s)	191
PleI	GAGTC	2 cut(s)	196, 644
PpsI	GAGTC	2 cut(s)	196, 644
Ppu21I	YACGTR	1 cut(s)	566
PscI	ACATGT	2 cut(s)	328, 1146
PshAI	GACNNNNGTC	1 cut(s)	1147
PsiI	TTATAA	1 cut(s)	1515
Psp124BI	GAGCTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	798
PspFI	CCCAGC	2 cut(s)	521, 916
PspGI	CCWGG	1 cut(s)	798
PspPI	GGNCC	1 cut(s)	545
PspXI	VCTCGAGB	1 cut(s)	531
PstNI	CAGNNNCTG	1 cut(s)	1323
PsuI	RGATCY	1 cut(s)	886
RsaI	GTAC	4 cut(s)	301, 564, 625, 1199
RsaNI	GTAC	4 cut(s)	300, 563, 624, 1198
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	257
SapI	GCTCTTC	1 cut(s)	262
SaqAI	TTAA	2 cut(s)	576, 1529
Sau96I	GGNCC	1 cut(s)	545
ScaI	AGTACT	2 cut(s)	301, 1199
SchI	GAGTC	2 cut(s)	197, 644
ScrFI	CCNGG	4 cut(s)	193, 398, 800, 1417
SduI	GDGCHC	2 cut(s)	15, 257
SfaNI	GCATC	1 cut(s)	460
Sfr274I	CTCGAG	1 cut(s)	531
SfuI	TTCGAA	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	4 cut(s)	83, 531, 738, 1166
SmoI	CTYRAG	4 cut(s)	83, 531, 738, 1166
SpeI	ACTAGT	1 cut(s)	302
SseBI	AGGCCT	2 cut(s)	406, 1428
SsiI	CCGC	2 cut(s)	560, 1205
SspMI	CTAG	7 cut(s)	140, 147, 303, 588, 627, 890, 900
SstI	GAGCTC	1 cut(s)	257
StuI	AGGCCT	2 cut(s)	406, 1428
StyD4I	CCNGG	4 cut(s)	191, 396, 798, 1415
StyI	CCWWGG	1 cut(s)	899
TaaI	ACNGT	2 cut(s)	941, 1385
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	5 cut(s)	124, 260, 362, 532, 1431
TatI	WGTACW	2 cut(s)	299, 1197
TfiI	GAWTC	6 cut(s)	150, 314, 515, 638, 904, 1320
Tru1I	TTAA	2 cut(s)	576, 1529
Tru9I	TTAA	2 cut(s)	576, 1529
TscAI	CASTG	5 cut(s)	46, 292, 946, 1053, 1382
TseFI	GTSAC	5 cut(s)	209, 390, 659, 1307, 1361
Tsp45I	GTSAC	5 cut(s)	209, 390, 659, 1307, 1361
TspDTI	ATGAA	4 cut(s)	772, 1013, 1037, 1482
TspGWI	ACGGA	1 cut(s)	348
TspRI	CASTG	5 cut(s)	46, 292, 946, 1053, 1382
Van91I	CCANNNNNTGG	1 cut(s)	1135
XbaI	TCTAGA	1 cut(s)	889
XceI	RCATGY	3 cut(s)	227, 332, 1150
XhoI	CTCGAG	1 cut(s)	531
XmaJI	CCTAGG	1 cut(s)	899
XspI	CTAG	7 cut(s)	140, 147, 303, 588, 627, 890, 900
ZrmI	AGTACT	2 cut(s)	301, 1199
Zsp2I	ATGCAT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.