Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015587

Physical Location & Seq

Genomic Coordinates Forward (+)

8932588 .. 8934122

Gene Structure 1535 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00006960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGGATATGGAGCACCAAGAGATCACTAACCCTGAGATCATTGAGAGCAACAACAATGGAGGAGGACTACTGATCAAGCTCAAGATGGCAAAGGCTAAACCTTTTTCGGAACAAGTCCGGGAAAGCTCTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAGGGTCTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGGTGGTGGTGAAGAATAGTGCCACTGAATTCAGTACTAGTACTACTGATTCCAGTGGTGAACCTGTCTGCATAGAGTGTGGTAAGATTTTCCCGTCAAAGAAATCTCTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGAATTGAGCCTCCTCAATCAACCAAGAACAGCTCCACTTCAACTTTATCTGATGCTTTGCCTCAAAATAATCACAAGGCAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAATCTGGTTCGGGCCTAATCCGAAAGTGGTTCCTGATCTGGTTAAGATTGTGCCTAGCTGGTCTCAAACTGCGAAAAGAGGTACGAAAGGTACTAGTCTTTCTGAAACCAACTCTGAGACTGATGATGATTGTGATGATGATGATGATGATGATGATGAGTTGGATTTGAGTGAAGCTGTCCATGATCTGATGATGTTAGCTCAAGCCAATCCAAAAGGAGCTGAGGAGGCTACCAACAGCAATTTCATGACCAAAAACGAGGATCGTGATGTAAAGGACAGAACGGTAATTGACTATGTGGGTGTAGCCAAGAAGAGGAAGCAGAAGCTTGAAATTGATGAGGATGGGGATTTTGTAAGTGGGTTTGATCTAGGGAAGTCTAGGAATCACTTGGAGCTGGGAGTGGATTTGAAAGAGGACAGTGAAGAGGAGTTATCGGATAGTGAAAACTCCGAGAGCATTGTGCTTGCGAACATGATGAGGAGGAAGAAGAGAAGGAAGATGAAATTGGAGGACTTGGAAGGAGCGGTTGTTGCTCAAGATCATCAACATCAAAGCCATCATCACAAAGTTCATACTTGCAGTCTTTGCAACAAGTCATTCCAAAGCCACCAAGCCTTGGGAGGACACATGTCAAGCCACAACAAGTTCAAGAACAACATCCAGTACCCTGTGGAACATGATCATCATCAATCTGGTTCTGACGATACTAATAATGGAAATGCTGATCTCACCAACGCAGCCACCCAAGTTGACCATGATCAGGCTGAAAGTCACCAATGCAGATTCTGTAACAGGACTTTTCCAACAGGTCAAGCATTGGGAGGTCATATGAGGTCTCACTGGACGGGTCCAAATGATCCAGCTCAATCGAGCCAGACCGGGCGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCGCCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGCTGGTTATGCAACTTCTTCTTATAATTCAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

487

Amino Acids

53.83

Weight (kDa)

5.38

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	347 - 371	5.5e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	415 - 438	5.5e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41600
malus_domestica	MD03G1043000.v1.1 MD11G1046000.v1.1
prunus_persica	Prupe.6G035400_v2.0.a1
pyrus_communis	pycom03g03320 pycom11g03730
rosa_chinensis	RchiOBHm_Chr5g0074621
rosa_laevigata	RLG00000036491
rosa_multiflora	Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006960
rosa_rugosa	Rorug05G0433300
rosa_samantha	Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1449
AccB7I	CCANNNNNTGG	1 cut(s)	1087
AccBSI	CCGCTC	1 cut(s)	995
AciI	CCGC	2 cut(s)	995, 1388
AclWI	GGATC	3 cut(s)	444, 738, 1322
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	5 cut(s)	235, 241, 550, 559, 1136
AfiI	CCNNNNNNNGG	4 cut(s)	347, 783, 1087, 1231
AflIII	ACRYGT	1 cut(s)	1098
AgsI	TTSAA	4 cut(s)	390, 800, 880, 1120
AhlI	ACTAGT	2 cut(s)	236, 560
AjuI	GAANNNNNNNTTGG	4 cut(s)	695, 727, 959, 991
Alw21I	GWGCWC	2 cut(s)	15, 182
Alw26I	GTCTC	3 cut(s)	534, 578, 1311
AlwI	GGATC	3 cut(s)	444, 738, 1322
AlwNI	CAGNNNCTG	2 cut(s)	169, 1257
AoxI	GGCC	3 cut(s)	338, 479, 1360
ApeKI	GCWGC	2 cut(s)	428, 1208
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	1356
AspS9I	GGNCC	2 cut(s)	479, 1319
AsuC2I	CCSGG	3 cut(s)	119, 332, 1351
AsuHPI	GGTGA	4 cut(s)	220, 269, 1192, 1235
AsuII	TTCGAA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	1319
BanII	GRGCYC	1 cut(s)	182
Bbv12I	GWGCWC	2 cut(s)	15, 182
BbvCI	CCTCAGC	2 cut(s)	432, 690
BbvI	GCAGC	2 cut(s)	440, 1220
BccI	CCATC	3 cut(s)	79, 806, 1035
BcgI	CGANNNNNNTGC	2 cut(s)	1345, 1379
BclI	TGATCA	4 cut(s)	72, 171, 1150, 1228
BcnI	CCSGG	3 cut(s)	119, 332, 1351
BcoDI	GTCTC	3 cut(s)	534, 578, 1311
BcuI	ACTAGT	2 cut(s)	236, 560
BfaI	CTAG	5 cut(s)	237, 522, 561, 839, 849
BisI	GCNGC	2 cut(s)	429, 1209
BlsI	GCNGC	2 cut(s)	430, 1210
BmcAI	AGTACT	2 cut(s)	235, 241
Bme1390I	CCNGG	3 cut(s)	119, 332, 1351
Bme18I	GGWCC	1 cut(s)	1319
BmgT120I	GGNCC	2 cut(s)	479, 1319
BmiI	GGNNCC	2 cut(s)	498, 1320
BmrFI	CCNGG	3 cut(s)	119, 332, 1351
BmsI	GCATC	1 cut(s)	391
BoxI	GACNNNNGTC	1 cut(s)	1099
BpmI	CTGGAG	1 cut(s)	1443
Bpu10I	CCTNAGC	2 cut(s)	432, 690
Bpu14I	TTCGAA	1 cut(s)	185
BpuEI	CTTGAG	3 cut(s)	65, 654, 990
BpuMI	CCSGG	3 cut(s)	119, 332, 1351
BsaBI	GATNNNNATC	1 cut(s)	1155
BsaI	GGTCTC	2 cut(s)	534, 1311
BsaJI	CCNNGG	1 cut(s)	1086
BsaXI	ACNNNNNCTCC	2 cut(s)	984, 1014
Bsc4I	CCNNNNNNNGG	4 cut(s)	347, 783, 1087, 1231
Bse118I	RCCGGY	1 cut(s)	199
Bse1I	ACTGG	3 cut(s)	252, 1132, 1316
Bse8I	GATNNNNATC	1 cut(s)	1155
BseDI	CCNNGG	1 cut(s)	1086
BseGI	GGATG	2 cut(s)	817, 1128
BseJI	GATNNNNATC	1 cut(s)	1155
BseLI	CCNNNNNNNGG	4 cut(s)	347, 783, 1087, 1231
BseMII	CTCAG	4 cut(s)	24, 423, 573, 681
BseNI	ACTGG	3 cut(s)	252, 1132, 1316
BseRI	GAGGAG	5 cut(s)	75, 351, 707, 911, 964
BseXI	GCAGC	2 cut(s)	440, 1220
BseYI	CCCAGC	2 cut(s)	455, 865
BshFI	GGCC	3 cut(s)	340, 481, 1362
BsiHKAI	GWGCWC	2 cut(s)	15, 182
BsiSI	CCGG	4 cut(s)	118, 200, 332, 1350
BslFI	GGGAC	1 cut(s)	472
BslI	CCNNNNNNNGG	4 cut(s)	347, 783, 1087, 1231
BsmAI	GTCTC	3 cut(s)	534, 578, 1311
BsmFI	GGGAC	1 cut(s)	472
BsmI	GAATGC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	340, 481, 1362
Bso31I	GGTCTC	2 cut(s)	534, 1311
Bsp119I	TTCGAA	1 cut(s)	185
Bsp1286I	GDGCHC	2 cut(s)	15, 182
BspACI	CCGC	2 cut(s)	995, 1388
BspANI	GGCC	3 cut(s)	340, 481, 1362
BspCNI	CTCAG	4 cut(s)	25, 424, 574, 682
BspHI	TCATGA	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	498, 1320
BspPI	GGATC	3 cut(s)	444, 738, 1322
BspQI	GCTCTTC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	185
BspTNI	GGTCTC	2 cut(s)	534, 1311
BsrBI	CCGCTC	1 cut(s)	995
BsrFI	RCCGGY	1 cut(s)	199
BsrI	ACTGG	3 cut(s)	252, 1132, 1316
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	1086
BssT1I	CCWWGG	1 cut(s)	1086
Bst4CI	ACNGT	2 cut(s)	754, 890
Bst6I	CTCTTC	4 cut(s)	187, 776, 888, 953
BstAPI	GCANNNNNTGC	1 cut(s)	1056
BstBI	TTCGAA	1 cut(s)	185
BstC8I	GCNNGC	1 cut(s)	936
BstDEI	CTNAG	4 cut(s)	33, 432, 582, 690
BstF5I	GGATG	2 cut(s)	817, 1128
BstHHI	GCGC	1 cut(s)	1356
BstMAI	GTCTC	3 cut(s)	534, 578, 1311
BstMWI	GCNNNNNNNGC	5 cut(s)	461, 695, 1001, 1056, 1433
BstNSI	RCATGY	2 cut(s)	153, 1102
BstPAI	GACNNNNGTC	1 cut(s)	1099
BstSCI	CCNGG	3 cut(s)	117, 330, 1349
BstV1I	GCAGC	2 cut(s)	440, 1220
BsuRI	GGCC	3 cut(s)	340, 481, 1362
BtsCI	GGATG	2 cut(s)	817, 1128
BtsIMutI	CAGTG	4 cut(s)	222, 259, 895, 1309
Cac8I	GCNNGC	1 cut(s)	936
CaiI	CAGNNNCTG	2 cut(s)	169, 1257
CciI	TCATGA	1 cut(s)	714
CfoI	GCGC	1 cut(s)	1356
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	2 cut(s)	479, 1319
Csp6I	GTAC	5 cut(s)	234, 240, 549, 558, 1135
CspCI	CAANNNNNGTGG	2 cut(s)	1201, 1236
CviAII	CATG	9 cut(s)	140, 150, 319, 650, 715, 943, 1099, 1148, 1226
CviQI	GTAC	5 cut(s)	234, 240, 549, 558, 1135
DdeI	CTNAG	4 cut(s)	33, 432, 582, 690
Eam1104I	CTCTTC	4 cut(s)	187, 776, 888, 953
EarI	CTCTTC	4 cut(s)	187, 776, 888, 953
EciI	GGCGGA	1 cut(s)	1377
Ecl136II	GAGCTC	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	1086
Eco147I	AGGCCT	2 cut(s)	340, 1362
Eco24I	GRGCYC	1 cut(s)	182
Eco31I	GGTCTC	2 cut(s)	534, 1311
Eco47I	GGWCC	1 cut(s)	1319
Eco53kI	GAGCTC	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	1086
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	182
ErhI	CCWWGG	1 cut(s)	1086
FaeI	CATG	9 cut(s)	143, 153, 322, 653, 718, 946, 1102, 1151, 1229
FaqI	GGGAC	1 cut(s)	472
FatI	CATG	9 cut(s)	139, 149, 318, 649, 714, 942, 1098, 1147, 1225
FauNDI	CATATG	1 cut(s)	1299
FbaI	TGATCA	4 cut(s)	72, 171, 1150, 1228
Fnu4HI	GCNGC	2 cut(s)	429, 1209
FokI	GGATG	2 cut(s)	824, 1115
FriOI	GRGCYC	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	429, 1209
FspBI	CTAG	5 cut(s)	237, 522, 561, 839, 849
GlaI	GCGC	1 cut(s)	1355
GluI	GCNGC	2 cut(s)	429, 1209
GsaI	CCCAGC	2 cut(s)	459, 869
GsuI	CTGGAG	1 cut(s)	1443
HaeIII	GGCC	3 cut(s)	340, 481, 1362
HapII	CCGG	4 cut(s)	118, 200, 332, 1350
HhaI	GCGC	1 cut(s)	1356
Hin1II	CATG	9 cut(s)	143, 153, 322, 653, 718, 946, 1102, 1151, 1229
Hin6I	GCGC	1 cut(s)	1354
HinP1I	GCGC	1 cut(s)	1354
HincII	GTYRAC	1 cut(s)	1222
HindII	GTYRAC	1 cut(s)	1222
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	5 cut(s)	248, 449, 468, 853, 1254
HpaII	CCGG	4 cut(s)	118, 200, 332, 1350
HphI	GGTGA	4 cut(s)	220, 269, 1192, 1235
Hpy166II	GTNNAC	2 cut(s)	260, 1222
Hpy188III	TCNNGA	8 cut(s)	82, 175, 500, 715, 734, 1007, 1120, 1422
Hpy8I	GTNNAC	2 cut(s)	260, 1222
HpyAV	CCTTC	2 cut(s)	957, 983
HpyCH4III	ACNGT	2 cut(s)	754, 890
HpyCH4V	TGCA	6 cut(s)	149, 270, 1050, 1059, 1251, 1436
HpyF10VI	GCNNNNNNNGC	5 cut(s)	461, 695, 1001, 1056, 1433
HpyF3I	CTNAG	4 cut(s)	33, 432, 582, 690
Hsp92II	CATG	9 cut(s)	143, 153, 322, 653, 718, 946, 1102, 1151, 1229
HspAI	GCGC	1 cut(s)	1354
Ksp22I	TGATCA	4 cut(s)	72, 171, 1150, 1228
LguI	GCTCTTC	1 cut(s)	187
LmnI	GCTCC	6 cut(s)	10, 386, 686, 862, 992, 1424
Lsp1109I	GCAGC	2 cut(s)	440, 1220
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	5 cut(s)	237, 522, 561, 839, 849
MaeIII	GTNAC	5 cut(s)	135, 324, 1241, 1259, 1456
MbiI	CCGCTC	1 cut(s)	995
MboII	GAAGA	8 cut(s)	174, 223, 793, 905, 967, 970, 979, 1434
MhlI	GDGCHC	2 cut(s)	15, 182
MluCI	AATT	7 cut(s)	227, 351, 709, 756, 801, 974, 1450
MmeI	TCCRAC	2 cut(s)	609, 1298
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	2 cut(s)	510, 1462
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	431
MspI	CCGG	4 cut(s)	118, 200, 332, 1350
MspR9I	CCNGG	3 cut(s)	119, 332, 1351
Mva1269I	GAATGC	1 cut(s)	151
MwoI	GCNNNNNNNGC	5 cut(s)	461, 695, 1001, 1056, 1433
NciI	CCSGG	3 cut(s)	119, 332, 1351
NdeI	CATATG	1 cut(s)	1299
NlaIII	CATG	9 cut(s)	143, 153, 322, 653, 718, 946, 1102, 1151, 1229
NlaIV	GGNNCC	2 cut(s)	498, 1320
NmuCI	GTSAC	3 cut(s)	135, 324, 1241
NsiI	ATGCAT	1 cut(s)	151
NspI	RCATGY	2 cut(s)	153, 1102
NspV	TTCGAA	1 cut(s)	185
PagI	TCATGA	1 cut(s)	714
PceI	AGGCCT	2 cut(s)	340, 1362
PciI	ACATGT	1 cut(s)	1098
PciSI	GCTCTTC	1 cut(s)	187
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	151
PfeI	GAWTC	5 cut(s)	248, 449, 468, 853, 1254
PflMI	CCANNNNNTGG	1 cut(s)	1087
PfoI	TCCNGGA	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	430, 1210
PscI	ACATGT	1 cut(s)	1098
PshAI	GACNNNNGTC	1 cut(s)	1099
PsiI	TTATAA	1 cut(s)	1449
Psp124BI	GAGCTC	1 cut(s)	182
PspFI	CCCAGC	2 cut(s)	455, 865
PspN4I	GGNNCC	2 cut(s)	498, 1320
PspPI	GGNCC	2 cut(s)	479, 1319
PstNI	CAGNNNCTG	2 cut(s)	169, 1257
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	5 cut(s)	235, 241, 550, 559, 1136
RsaNI	GTAC	5 cut(s)	234, 240, 549, 558, 1135
RseI	CAYNNNNRTG	1 cut(s)	144
SacI	GAGCTC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	510, 1462
SatI	GCNGC	2 cut(s)	429, 1209
Sau96I	GGNCC	2 cut(s)	479, 1319
ScaI	AGTACT	2 cut(s)	235, 241
ScrFI	CCNGG	3 cut(s)	119, 332, 1351
SduI	GDGCHC	2 cut(s)	15, 182
SfaNI	GCATC	1 cut(s)	391
SfuI	TTCGAA	1 cut(s)	185
SinI	GGWCC	1 cut(s)	1319
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	3 cut(s)	80, 669, 1005
SmoI	CTYRAG	3 cut(s)	80, 669, 1005
SpeI	ACTAGT	2 cut(s)	236, 560
Sse9I	AATT	7 cut(s)	227, 351, 709, 756, 801, 974, 1450
SseBI	AGGCCT	2 cut(s)	340, 1362
SsiI	CCGC	2 cut(s)	995, 1388
SspMI	CTAG	5 cut(s)	237, 522, 561, 839, 849
SstI	GAGCTC	1 cut(s)	182
StuI	AGGCCT	2 cut(s)	340, 1362
StyD4I	CCNGG	3 cut(s)	117, 330, 1349
StyI	CCWWGG	1 cut(s)	1086
TaaI	ACNGT	2 cut(s)	754, 890
TaqI	TCGA	4 cut(s)	185, 466, 1340, 1365
TasI	AATT	7 cut(s)	227, 351, 709, 756, 801, 974, 1450
TatI	WGTACW	2 cut(s)	233, 239
TfiI	GAWTC	5 cut(s)	248, 449, 468, 853, 1254
Tru1I	TTAA	2 cut(s)	510, 1462
Tru9I	TTAA	2 cut(s)	510, 1462
TscAI	CASTG	4 cut(s)	229, 259, 895, 1316
TseFI	GTSAC	3 cut(s)	135, 324, 1241
TseI	GCWGC	2 cut(s)	428, 1208
Tsp45I	GTSAC	3 cut(s)	135, 324, 1241
TspDTI	ATGAA	4 cut(s)	703, 986, 1031, 1416
TspRI	CASTG	4 cut(s)	229, 259, 895, 1316
Van91I	CCANNNNNTGG	1 cut(s)	1087
VpaK11BI	GGWCC	1 cut(s)	1319
XapI	RAATTY	1 cut(s)	227
XceI	RCATGY	2 cut(s)	153, 1102
XspI	CTAG	5 cut(s)	237, 522, 561, 839, 849
ZrmI	AGTACT	2 cut(s)	235, 241
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.