Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015587

Physical Location & Seq

Genomic Coordinates Forward (+)

60240466 .. 60242214

Gene Structure 1749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0433300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGCAGAGCAGCCTAATAATCTATCTCCCTATCCCTATGTCATCCTCTTCATCTTTTTTATCTCATCATCAACTGTCATTTCTCACAAACCAGCTGCATGCATCAAAAGGGATCAAGACTCTCTTTGGTCCTCTTTTGATATGCCTTCTCATTTGAATTGGTCTTCTGAGGATTGCTGTCACTGGGAGGGCATTACTTGCGATATAGCTGGCCTCAAACTCAAAGGGGGTGATTCTTTTCCCTCTTCTTCACTTGGAAATCTTTCGCATCTCACCCACCTCAATTTGTCCCACAATTCACTTGAAGGTTCACTTGATCAAACTGGATTCTTCTCATCTTTGAGTCGTCTTGAGATCCTAGATTTGAGCTACAACCTTCTTTCTGGAGAACTACCATTTTCTCTACCATCCAGTAAAATCCAAATGCTTGATTTGAGCCACAACGATCTTCAAGGTTCTGTTCCATCTTCATTCTTCAAAGAAGCATGGCGTTTGACTAGTTTTAATGTATTTCGTGCTGGTAGCAATAGCCTCTCAGGGTTACTTCCAGAAGATATCTACAATGCTACAAAACTTGAGGAAATTTCATTACCTCACAATTCACTTCATGGAGCTATTAGTGAAAGAATTGTTAACCTCGCCAACCTCAAAATCCTCGACTTTAGCTATAATGGATTGAGTGGCAAGCTACCTTCAAGTATTGGTAAGCTCTCCAAATTGAAACTCTTGCTGCTTCATTTCAACAACCTAGAAGGTTCTGTGCCCCCACCTTTGATGAATTGCATGAACCTTACAGAACTGAATCTGGGATTCAACAAATTTGAAGGAAATATCTCTGCACTTAACTTCTCCAAACTTAGTCAACTAATTAAACTTGACTTTTTGAGTAATCGCTTCACTGGAATCCTTCCAATAAGCCTTTACTCATGTAAGTCCTTGAAAGCAATTCGACTAAGCCAAAACGATTTACAAAGTCGATTGGCCAATATCACAAGGACAATGAAGATATTGATGCGTTGCAAAAGTCTTGTATTCCTATCTCTTCCTTCTAATTTTGTAGGCGAGGAAATGCCAGCTGATCTTGGCATGGTTGAGTTTGAAGGATTCCAAAAACTTCGATATCTGAGACTAAGTGGATGTGAGTTCACGGGTCAATTACCTGCATGGTTATCTAAGCTCAAGAAGCTACAGGTCTTGGATCTCGGAGATAATAGAATCACAGGTTCAATTCCAAGTTGGTTTGGGACTCTTCCAAGGCTATCTAATCTACGTTTGGATAACAACTCAATTTCAGCCCAAGTAGATAATACGGATCTTGAATTGATTGTCTACCCTTTCCGAGGTGATCGTCTATACAGAATGTCTAATCAACGAGTGAAAGGTATAGGCAATGGTACCGTCGAGAGTCTCGAGACACGTATTGGTTATGGCCAATTACCGTTCTTTTCCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

484

Amino Acids

53.85

Weight (kDa)

7.61

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	206 - 297	2e-06	Leucine-rich repeat region
LRR_14	PF23598	362 - 429	2.5e-08	Leucine-rich repeat region
LRR_8	PF13855	371 - 430	3.3e-10	Leucine rich repeat
LRR_4	PF12799	394 - 431	1.5e-06	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41600
malus_domestica	MD03G1043000.v1.1 MD11G1046000.v1.1
prunus_persica	Prupe.6G035400_v2.0.a1
pyrus_communis	pycom03g03320 pycom11g03730
rosa_chinensis	RchiOBHm_Chr5g0074621
rosa_laevigata	RLG00000036491
rosa_multiflora	Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006960
rosa_rugosa	Rorug05G0433300
rosa_samantha	Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1168
Acc65I	GGTACC	1 cut(s)	1394
AccB1I	GGYRCC	1 cut(s)	1394
AccI	GTMKAC	1 cut(s)	1329
AclWI	GGATC	4 cut(s)	120, 349, 1206, 1320
AcoI	YGGCCR	2 cut(s)	981, 1429
AcsI	RAATTY	2 cut(s)	582, 818
AfaI	GTAC	1 cut(s)	1396
AfiI	CCNNNNNNNGG	1 cut(s)	1340
AflIII	ACRYGT	1 cut(s)	1415
AhlI	ACTAGT	1 cut(s)	497
Alw26I	GTCTC	3 cut(s)	1120, 1406, 1412
AlwI	GGATC	4 cut(s)	120, 349, 1206, 1320
Ama87I	CYCGRG	1 cut(s)	1409
AoxI	GGCC	3 cut(s)	211, 981, 1429
ApeKI	GCWGC	3 cut(s)	10, 95, 730
ApoI	RAATTY	2 cut(s)	582, 818
Asp700I	GAANNNNTTC	1 cut(s)	262
Asp718I	GGTACC	1 cut(s)	1394
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	1450
AsuHPI	GGTGA	3 cut(s)	242, 265, 1355
AvaI	CYCGRG	1 cut(s)	1409
AvaII	GGWCC	1 cut(s)	129
BaeGI	GKGCMC	1 cut(s)	765
BalI	TGGCCA	2 cut(s)	983, 1431
BanI	GGYRCC	1 cut(s)	1394
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	3 cut(s)	22, 82, 717
BccI	CCATC	2 cut(s)	415, 472
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	1 cut(s)	1450
BcoDI	GTCTC	3 cut(s)	1120, 1406, 1412
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	3 cut(s)	359, 498, 749
BfmI	CTRYAG	1 cut(s)	1187
BfuAI	ACCTGC	1 cut(s)	1168
BisI	GCNGC	3 cut(s)	11, 96, 731
BlsI	GCNGC	3 cut(s)	12, 97, 732
Bme1390I	CCNGG	1 cut(s)	1450
Bme18I	GGWCC	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	1409
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	1396
BmrFI	CCNGG	1 cut(s)	1450
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	3 cut(s)	111, 277, 1002
BmuI	ACTGGG	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	405
BpuEI	CTTGAG	3 cut(s)	371, 596, 1163
BpuMI	CCSGG	1 cut(s)	1450
BsaAI	YACGTR	1 cut(s)	1418
BsaJI	CCNNGG	2 cut(s)	1253, 1339
Bsc4I	CCNNNNNNNGG	1 cut(s)	1340
Bse1I	ACTGG	4 cut(s)	188, 328, 411, 904
Bse3DI	GCAATG	1 cut(s)	1396
BseDI	CCNNGG	2 cut(s)	1253, 1339
BseGI	GGATG	3 cut(s)	42, 407, 1142
BseLI	CCNNNNNNNGG	1 cut(s)	1340
BseMI	GCAATG	1 cut(s)	1396
BseMII	CTCAG	3 cut(s)	159, 549, 1115
BseNI	ACTGG	4 cut(s)	188, 328, 411, 904
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	3 cut(s)	22, 82, 717
BsgI	GTGCAG	1 cut(s)	822
BshFI	GGCC	3 cut(s)	213, 983, 1431
BshNI	GGYRCC	1 cut(s)	1394
BsiHKCI	CYCGRG	1 cut(s)	1409
BsiSI	CCGG	1 cut(s)	1449
BslFI	GGGAC	2 cut(s)	274, 1258
BslI	CCNNNNNNNGG	1 cut(s)	1340
BsmAI	GTCTC	3 cut(s)	1120, 1406, 1412
BsmFI	GGGAC	2 cut(s)	274, 1258
BsnI	GGCC	3 cut(s)	213, 983, 1431
BsoBI	CYCGRG	1 cut(s)	1409
Bsp1286I	GDGCHC	1 cut(s)	765
Bsp143I	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
BspANI	GGCC	3 cut(s)	213, 983, 1431
BspCNI	CTCAG	3 cut(s)	160, 548, 1116
BspLI	GGNNCC	1 cut(s)	1396
BspMI	ACCTGC	1 cut(s)	1168
BspPI	GGATC	4 cut(s)	120, 349, 1206, 1320
BspT107I	GGYRCC	1 cut(s)	1394
BsrDI	GCAATG	1 cut(s)	1396
BsrI	ACTGG	4 cut(s)	188, 328, 411, 904
BssECI	CCNNGG	2 cut(s)	1253, 1339
BssMI	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
BssT1I	CCWWGG	1 cut(s)	1253
Bst4CI	ACNGT	3 cut(s)	76, 1399, 1440
Bst6I	CTCTTC	4 cut(s)	53, 250, 1047, 1254
BstAPI	GCANNNNNTGC	1 cut(s)	198
BstBAI	YACGTR	1 cut(s)	1418
BstC8I	GCNNGC	4 cut(s)	100, 211, 686, 1074
BstDEI	CTNAG	7 cut(s)	168, 535, 857, 953, 1124, 1130, 1173
BstENI	CCTNNNNNAGG	1 cut(s)	1338
BstF5I	GGATG	3 cut(s)	42, 407, 1142
BstKTI	GATC	8 cut(s)	115, 319, 357, 448, 1081, 1201, 1315, 1348
BstMAI	GTCTC	3 cut(s)	1120, 1406, 1412
BstMBI	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
BstMWI	GCNNNNNNNGC	2 cut(s)	198, 1183
BstNSI	RCATGY	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	1448
BstSFI	CTRYAG	1 cut(s)	1187
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	3 cut(s)	22, 82, 717
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	3 cut(s)	354, 1198, 1312
BstYI	RGATCY	3 cut(s)	354, 1198, 1312
BsuRI	GGCC	3 cut(s)	213, 983, 1431
BtsCI	GGATG	3 cut(s)	42, 407, 1142
BtsIMutI	CAGTG	2 cut(s)	181, 897
BveI	ACCTGC	1 cut(s)	1168
Cac8I	GCNNGC	4 cut(s)	100, 211, 686, 1074
Cfr13I	GGNCC	1 cut(s)	129
Csp6I	GTAC	1 cut(s)	1395
CviAII	CATG	7 cut(s)	99, 486, 608, 784, 927, 1087, 1164
CviQI	GTAC	1 cut(s)	1395
DdeI	CTNAG	7 cut(s)	168, 535, 857, 953, 1124, 1130, 1173
DpnI	GATC	8 cut(s)	114, 318, 356, 447, 1080, 1200, 1314, 1347
DpnII	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
EaeI	YGGCCR	2 cut(s)	981, 1429
Eam1104I	CTCTTC	4 cut(s)	53, 250, 1047, 1254
EarI	CTCTTC	4 cut(s)	53, 250, 1047, 1254
Eco130I	CCWWGG	1 cut(s)	1253
Eco32I	GATATC	2 cut(s)	556, 1121
Eco47I	GGWCC	1 cut(s)	129
Eco88I	CYCGRG	1 cut(s)	1409
EcoNI	CCTNNNNNAGG	1 cut(s)	1338
EcoRV	GATATC	2 cut(s)	556, 1121
EcoT14I	CCWWGG	1 cut(s)	1253
EcoT22I	ATGCAT	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	1253
FaeI	CATG	7 cut(s)	102, 489, 611, 787, 930, 1090, 1167
FalI	AAGNNNNNCTT	4 cut(s)	108, 140, 297, 329
FaqI	GGGAC	2 cut(s)	274, 1258
FatI	CATG	7 cut(s)	98, 485, 607, 783, 926, 1086, 1163
FbaI	TGATCA	1 cut(s)	316
FblI	GTMKAC	1 cut(s)	1329
Fnu4HI	GCNGC	3 cut(s)	11, 96, 731
FokI	GGATG	3 cut(s)	29, 394, 1149
Fsp4HI	GCNGC	3 cut(s)	11, 96, 731
FspBI	CTAG	3 cut(s)	359, 498, 749
GluI	GCNGC	3 cut(s)	11, 96, 731
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	3 cut(s)	213, 983, 1431
HapII	CCGG	1 cut(s)	1449
Hin1II	CATG	7 cut(s)	102, 489, 611, 787, 930, 1090, 1167
HincII	GTYRAC	2 cut(s)	634, 863
HindII	GTYRAC	2 cut(s)	634, 863
HpaI	GTTAAC	1 cut(s)	634
HpaII	CCGG	1 cut(s)	1449
HphI	GGTGA	3 cut(s)	242, 265, 1355
Hpy166II	GTNNAC	5 cut(s)	311, 634, 863, 1146, 1330
Hpy188I	TCNGA	4 cut(s)	169, 1125, 1205, 1340
Hpy188III	TCNNGA	9 cut(s)	116, 350, 384, 548, 1180, 1316, 1402, 1409, 1411
Hpy8I	GTNNAC	5 cut(s)	311, 634, 863, 1146, 1330
Hpy99I	CGWCG	1 cut(s)	1403
HpyAV	CCTTC	9 cut(s)	156, 299, 386, 702, 746, 818, 917, 1056, 1094
HpyCH4III	ACNGT	3 cut(s)	76, 1399, 1440
HpyCH4IV	ACGT	2 cut(s)	1270, 1417
HpyCH4V	TGCA	6 cut(s)	98, 102, 783, 839, 1020, 1163
HpyF10VI	GCNNNNNNNGC	2 cut(s)	198, 1183
HpyF3I	CTNAG	7 cut(s)	168, 535, 857, 953, 1124, 1130, 1173
HpySE526I	ACGT	2 cut(s)	1270, 1417
Hsp92II	CATG	7 cut(s)	102, 489, 611, 787, 930, 1090, 1167
KpnI	GGTACC	1 cut(s)	1398
Ksp22I	TGATCA	1 cut(s)	316
KspAI	GTTAAC	1 cut(s)	634
Kzo9I	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	3 cut(s)	22, 82, 717
LweI	GCATC	3 cut(s)	111, 277, 1002
MaeI	CTAG	3 cut(s)	359, 498, 749
MaeII	ACGT	2 cut(s)	1270, 1417
MaeIII	GTNAC	2 cut(s)	179, 540
MalI	GATC	8 cut(s)	114, 318, 356, 447, 1080, 1200, 1314, 1347
MboI	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
MflI	RGATCY	3 cut(s)	354, 1198, 1312
MhlI	GDGCHC	1 cut(s)	765
MlsI	TGGCCA	2 cut(s)	983, 1431
MluNI	TGGCCA	2 cut(s)	983, 1431
MlyI	GAGTC	4 cut(s)	113, 352, 1240, 1414
Mox20I	TGGCCA	2 cut(s)	983, 1431
Mph1103I	ATGCAT	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	262
MscI	TGGCCA	2 cut(s)	983, 1431
MseI	TTAA	4 cut(s)	504, 633, 843, 870
Msp20I	TGGCCA	2 cut(s)	983, 1431
MspA1I	CMGCKG	2 cut(s)	95, 1076
MspI	CCGG	1 cut(s)	1449
MspR9I	CCNGG	1 cut(s)	1450
MwoI	GCNNNNNNNGC	2 cut(s)	198, 1183
NciI	CCSGG	1 cut(s)	1450
NdeII	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
NlaIII	CATG	7 cut(s)	102, 489, 611, 787, 930, 1090, 1167
NlaIV	GGNNCC	1 cut(s)	1396
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	104
NspI	RCATGY	1 cut(s)	102
PaeI	GCATGC	1 cut(s)	102
PaeR7I	CTCGAG	1 cut(s)	1409
PcsI	WCGNNNNNNNCGW	1 cut(s)	1407
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	7 cut(s)	233, 327, 802, 810, 903, 1104, 1215
PkrI	GCNGC	3 cut(s)	12, 97, 732
PleI	GAGTC	4 cut(s)	113, 351, 1240, 1413
PpsI	GAGTC	4 cut(s)	113, 351, 1240, 1413
Ppu21I	YACGTR	1 cut(s)	1418
PspN4I	GGNNCC	1 cut(s)	1396
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	3 cut(s)	354, 1198, 1312
PvuII	CAGCTG	2 cut(s)	95, 1076
RsaI	GTAC	1 cut(s)	1396
RsaNI	GTAC	1 cut(s)	1395
SaqAI	TTAA	4 cut(s)	504, 633, 843, 870
SatI	GCNGC	3 cut(s)	11, 96, 731
Sau3AI	GATC	8 cut(s)	112, 316, 354, 445, 1078, 1198, 1312, 1345
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	4 cut(s)	113, 352, 1240, 1414
ScrFI	CCNGG	1 cut(s)	1450
SduI	GDGCHC	1 cut(s)	765
SfaNI	GCATC	3 cut(s)	111, 277, 1002
SfcI	CTRYAG	1 cut(s)	1187
Sfr274I	CTCGAG	1 cut(s)	1409
SinI	GGWCC	1 cut(s)	129
SlaI	CTCGAG	1 cut(s)	1409
SmlI	CTYRAG	4 cut(s)	350, 575, 1178, 1409
SmoI	CTYRAG	4 cut(s)	350, 575, 1178, 1409
SpeI	ACTAGT	1 cut(s)	497
SphI	GCATGC	1 cut(s)	102
SspMI	CTAG	3 cut(s)	359, 498, 749
StyD4I	CCNGG	1 cut(s)	1448
StyI	CCWWGG	1 cut(s)	1253
TaaI	ACNGT	3 cut(s)	76, 1399, 1440
TaiI	ACGT	2 cut(s)	1273, 1420
TaqI	TCGA	6 cut(s)	657, 949, 976, 1117, 1401, 1410
TfiI	GAWTC	7 cut(s)	233, 327, 802, 810, 903, 1104, 1215
Tru1I	TTAA	4 cut(s)	504, 633, 843, 870
Tru9I	TTAA	4 cut(s)	504, 633, 843, 870
TscAI	CASTG	2 cut(s)	188, 904
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	10, 95, 730
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	8 cut(s)	40, 459, 576, 596, 725, 791, 800, 1016
TspGWI	ACGGA	1 cut(s)	1325
TspRI	CASTG	2 cut(s)	188, 904
VpaK11BI	GGWCC	1 cut(s)	129
XagI	CCTNNNNNAGG	1 cut(s)	1338
XapI	RAATTY	2 cut(s)	582, 818
XceI	RCATGY	1 cut(s)	102
XhoI	CTCGAG	1 cut(s)	1409
XmiI	GTMKAC	1 cut(s)	1329
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	3 cut(s)	359, 498, 749
Zsp2I	ATGCAT	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.