Prupe.6G035400_v2.0.a1

C2H2-type zinc finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Forward (+)
2661273 .. 2664038
2766 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G035400.1

Sequence Viewer

Length: 1824 bp
ATGGATGTTGAAGACCAAGAGACTCGGTTTCGGCCACGAGCTGGCGATCAAGAACAACAACCCAACAAGAAAACAAACCAAGAGACAGAGAGCAACAATGGAGGACTGTTTGCCAAGCTCAAGTTCCCAAAGCCAGAACCTTTAGACCAAGAACGCAAATACCCTGCTCCTCCTGAATTCACTCGAATCTGTGAGGTCTGCAACAAGGGGTTCAGCTCAGGCAAGGCACTTGGAGGTCACATGAGAATGCATGTTCAAGCAAACAGAGAACTGTTTCAGGCTCGCAAGAACAAGATTAAAAAACCCACCAAGATTCTGAAGCCCAACAATTCTGATGTTAGCAGCTCGAATGGTGGTGGGGGTTTTGGGGTTGAAGGTAATAGCAATAGCAATAGCAGCATGAAGCCTGATTGCTGTGTTTGCGGCAAGAACTTTCCGTCTATGAAGTCTCTGTTTGGGCACATGAGATCACATCCTGAGAGAGAATGGAGGGGAATTCAACCTCCTCCAACAATAGCCAAGAACAGCTCTTCTTCTACTTTATCAGATGCTGTGCCTCAGAACAACAATAAAGCTGATGATCATCAGATTGACTCTGCTGCTACTCCTGTTGGGTCCAATAATTCTGCTCCTGATCTGTCCAAGACTCTGCCTGGTTGGTCTCTCACTGCTAGGAGAGGTAGGAAAAGCATTGGCTCATCAGGCAACTCTGAATCTGTTTCGGGATTGGAGTTGAGTCTCGGAGTTGAAGAGCAGATGGAGGAAGCTGTTCATGATCTTTTGATGCTAGCTCAATCCAATCCATGCTTCTATGGATTGTCAGATAAGGGAAAAGGAGCTGAGATGTGTGAGGCTACTAACAGCAATTTCTTCATCACCAACAACAGCAACCAGGCTGATTACATCAAGGACAAAAACCAGGTAATTGATTATGAGGGGACCTCAAAGAAGAGAAAGGGAACTGAGATGTGCTTTCCATCCAAGAACATGAAAAGTGAGAAAAAATGGTTTGATGATTATGATGGTATGAAAGGGAAGGGTGTTTTGGGAATTGGGTTTGGTCCAGAAAAGCCATCAGTGAAGAATTTCTCGAAGTTGGGACCAATGGAGGACAACAAGAACAACAACATTGAAGAGGAATTATCAGACAGTCAGAACTCTGAGAGCATTGTGCTTGCCAGCATGAAGAGGAGGAAGAGGAGAAAGATGAAATTGATAGACTTGGAAGGAGTGGTTGGAGAGATTATTGGTGCTCAGGGTCATCATCAAAGTCTCCATCAGAAGCTCAGATACAAATGCAGTCTTTGTGGCAAGTCTTTCCCAAGTCATCAAGCATTGGGTGGCCACATGTCCAGCCATAACAAGCTCAAGAACAACAACAACAACATCATCGTGAACCATTCATCTCTGGATGATCAATCTGCCTCTGCTGATGTGTCAGCTGCTGAAGGTGGGCATAATCTTGATGAAGCACAAACAACCATGGCACTTGATCAAGATCATCATGTGGCTGGTGCTGGCTCTGGCTCAGGAGCAGGAGGACTAGGAGCTCATCAAGCTCATCACCAATGCAAAATCTGCGACAAGATTTTTCCAACAGGTCAGGCCTTAGGTGGTCACAAAAGGTGCCATTGGACTGGGCCCACTGAGCAGCTGCTACCTCAGTCCAGTCAGGCACCTTCACCAGGTGAAGCAAGCCAAAACGCAGGTCGTAAAGTTCTCAACTTTGACCTCAATGAGCTTCCAGCTACGGAGTTTGAAGAAGGTACAGATCAGTATGGGGCAGCTGGCTATGCAACTTCTTCTCACAATTCAGTAACTTAG

Protein Analysis

608

Amino Acids

65.86

Weight (kDa)

7.89

Isoelectric Point (pI)

44.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015587)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1697
AccB1I GGYRCC 2 cut(s) 1626, 1675
AccB7I CCANNNNNTGG 1 cut(s) 41
AciI CCGC 1 cut(s) 423
AcoI YGGCCR 2 cut(s) 32, 1342
AcsI RAATTY 3 cut(s) 176, 495, 1084
AcuI CTGAAG 2 cut(s) 338, 1467
AdeI CACNNNGTG 1 cut(s) 1688
AfaI GTAC 1 cut(s) 1768
AfiI CCNNNNNNNGG 2 cut(s) 41, 1685
AflIII ACRYGT 1 cut(s) 1347
AgsI TTSAA 7 cut(s) 11, 257, 374, 500, 749, 1133, 1760
AjnI CCWGG 4 cut(s) 652, 891, 918, 1684
AjuI GAANNNNNNNTTGG 8 cut(s) 107, 139, 791, 823, 1028, 1060, 1218, 1250
Alw21I GWGCWC 2 cut(s) 1255, 1552
Alw26I GTCTC 6 cut(s) 14, 77, 453, 666, 743, 1277
AlwNI CAGNNNCTG 2 cut(s) 551, 1445
AoxI GGCC 4 cut(s) 32, 1342, 1605, 1640
ApaI GGGCCC 1 cut(s) 1644
ApeKI GCWGC 7 cut(s) 342, 396, 599, 1442, 1651, 1654, 1784
ApoI RAATTY 3 cut(s) 176, 495, 1084
ArsI GACNNNNNNTTYG 2 cut(s) 1693, 1725
Asp700I GAANNNNTTC 3 cut(s) 273, 768, 1085
AspS9I GGNCC 6 cut(s) 615, 939, 1061, 1100, 1640, 1641
AsuHPI GGTGA 4 cut(s) 868, 1556, 1674, 1700
AsuNHI GCTAGC 1 cut(s) 787
AvaII GGWCC 4 cut(s) 615, 939, 1061, 1100
AxyI CCTNAGG 1 cut(s) 1609
BaeGI GKGCMC 2 cut(s) 462, 1644
BalI TGGCCA 1 cut(s) 1344
BanI GGYRCC 2 cut(s) 1626, 1675
BanII GRGCYC 2 cut(s) 1552, 1644
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BauI CACGAG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 2 cut(s) 1255, 1552
BbvI GCAGC 7 cut(s) 354, 408, 586, 1429, 1641, 1663, 1796
BccI CCATC 5 cut(s) 751, 985, 1016, 1081, 1284
BciT130I CCWGG 4 cut(s) 654, 893, 920, 1686
BclI TGATCA 3 cut(s) 580, 1414, 1492
BcoDI GTCTC 6 cut(s) 14, 77, 453, 666, 743, 1277
BfaI CTAG 3 cut(s) 672, 788, 1544
BfuAI ACCTGC 1 cut(s) 1697
BisI GCNGC 8 cut(s) 343, 397, 424, 600, 1443, 1652, 1655, 1785
BlsI GCNGC 8 cut(s) 344, 398, 425, 601, 1444, 1653, 1656, 1786
Bme1390I CCNGG 4 cut(s) 654, 893, 920, 1686
Bme18I GGWCC 4 cut(s) 615, 939, 1061, 1100
BmgT120I GGNCC 6 cut(s) 615, 939, 1061, 1100, 1640, 1641
BmiI GGNNCC 6 cut(s) 616, 940, 1101, 1628, 1642, 1677
BmrFI CCNGG 4 cut(s) 654, 893, 920, 1686
BmrI ACTGGG 1 cut(s) 1647
BmsI GCATC 2 cut(s) 538, 774
BmtI GCTAGC 1 cut(s) 791
BmuI ACTGGG 1 cut(s) 1647
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 926, 958
Bpu10I CCTNAGC 3 cut(s) 217, 1254, 1528
BpuEI CTTGAG 2 cut(s) 104, 1352
BsaBI GATNNNNATC 2 cut(s) 582, 1497
BsaI GGTCTC 1 cut(s) 666
BsaJI CCNNGG 1 cut(s) 1482
Bsc4I CCNNNNNNNGG 2 cut(s) 41, 1685
Bse1I ACTGG 2 cut(s) 1642, 1668
Bse21I CCTNAGG 1 cut(s) 1609
Bse8I GATNNNNATC 2 cut(s) 582, 1497
BseBI CCWGG 4 cut(s) 654, 893, 920, 1686
BseDI CCNNGG 1 cut(s) 1482
BseGI GGATG 4 cut(s) 10, 472, 977, 1417
BseJI GATNNNNATC 2 cut(s) 582, 1497
BseLI CCNNNNNNNGG 2 cut(s) 41, 1685
BseNI ACTGG 2 cut(s) 1642, 1668
BseRI GAGGAG 4 cut(s) 159, 495, 1204, 1213
BseSI GKGCMC 2 cut(s) 462, 1644
BseXI GCAGC 7 cut(s) 354, 408, 586, 1429, 1641, 1663, 1796
BshFI GGCC 4 cut(s) 34, 1344, 1607, 1642
BshNI GGYRCC 2 cut(s) 1626, 1675
BsiHKAI GWGCWC 2 cut(s) 1255, 1552
BslFI GGGAC 2 cut(s) 952, 1113
BslI CCNNNNNNNGG 2 cut(s) 41, 1685
BsmAI GTCTC 6 cut(s) 14, 77, 453, 666, 743, 1277
BsmFI GGGAC 2 cut(s) 952, 1113
BsmI GAATGC 1 cut(s) 252
BsnI GGCC 4 cut(s) 34, 1344, 1607, 1642
Bso31I GGTCTC 1 cut(s) 666
Bsp120I GGGCCC 1 cut(s) 1640
Bsp1286I GDGCHC 4 cut(s) 462, 1255, 1552, 1644
Bsp143I GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
Bsp19I CCATGG 1 cut(s) 1482
BspACI CCGC 1 cut(s) 423
BspANI GGCC 4 cut(s) 34, 1344, 1607, 1642
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 6 cut(s) 616, 940, 1101, 1628, 1642, 1677
BspMI ACCTGC 1 cut(s) 1697
BspOI GCTAGC 1 cut(s) 791
BspQI GCTCTTC 2 cut(s) 535, 744
BspT107I GGYRCC 2 cut(s) 1626, 1675
BspTNI GGTCTC 1 cut(s) 666
BsrI ACTGG 2 cut(s) 1642, 1668
BssECI CCNNGG 1 cut(s) 1482
BssMI GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
BssSI CACGAG 1 cut(s) 36
BssT1I CCWWGG 1 cut(s) 1482
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 4 cut(s) 654, 893, 920, 1686
Bst4CI ACNGT 3 cut(s) 108, 273, 1151
Bst6I CTCTTC 6 cut(s) 535, 744, 944, 1128, 1181, 1190
BstAPI GCANNNNNTGC 1 cut(s) 1578
BstC8I GCNNGC 8 cut(s) 43, 283, 789, 1176, 1180, 1519, 1696, 1789
BstDSI CCRYGG 1 cut(s) 1482
BstENI CCTNNNNNAGG 1 cut(s) 1683
BstF5I GGATG 4 cut(s) 10, 472, 977, 1417
BstKTI GATC 9 cut(s) 49, 470, 583, 637, 778, 1417, 1495, 1501, 1774
BstMAI GTCTC 6 cut(s) 14, 77, 453, 666, 743, 1277
BstMBI GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
BstMWI GCNNNNNNNGC 7 cut(s) 396, 420, 702, 1556, 1578, 1648, 1793
BstNI CCWGG 4 cut(s) 654, 893, 920, 1686
BstNSI RCATGY 2 cut(s) 254, 1351
BstSCI CCNGG 4 cut(s) 652, 891, 918, 1684
BstSLI GKGCMC 2 cut(s) 462, 1644
BstV1I GCAGC 7 cut(s) 354, 408, 586, 1429, 1641, 1663, 1796
BstV2I GAAGAC 1 cut(s) 18
BstXI CCANNNNNNTGG 1 cut(s) 1637
Bsu36I CCTNAGG 1 cut(s) 1609
BsuRI GGCC 4 cut(s) 34, 1344, 1607, 1642
BtgI CCRYGG 1 cut(s) 1482
BtsCI GGATG 4 cut(s) 10, 472, 977, 1417
BtsI GCAGTG 1 cut(s) 666
BtsIMutI CAGTG 3 cut(s) 666, 1083, 1644
BveI ACCTGC 1 cut(s) 1697
Cac8I GCNNGC 8 cut(s) 43, 283, 789, 1176, 1180, 1519, 1696, 1789
CaiI CAGNNNCTG 2 cut(s) 551, 1445
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 6 cut(s) 615, 939, 1061, 1100, 1640, 1641
CsiI ACCWGGT 2 cut(s) 918, 1684
Csp6I GTAC 1 cut(s) 1767
CviQI GTAC 1 cut(s) 1767
DpnI GATC 9 cut(s) 48, 469, 582, 636, 777, 1416, 1494, 1500, 1773
DpnII GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
DraIII CACNNNGTG 1 cut(s) 1688
EaeI YGGCCR 2 cut(s) 32, 1342
Eam1104I CTCTTC 6 cut(s) 535, 744, 944, 1128, 1181, 1190
EarI CTCTTC 6 cut(s) 535, 744, 944, 1128, 1181, 1190
Ecl136II GAGCTC 1 cut(s) 1550
Eco130I CCWWGG 1 cut(s) 1482
Eco147I AGGCCT 1 cut(s) 1607
Eco24I GRGCYC 2 cut(s) 1552, 1644
Eco31I GGTCTC 1 cut(s) 666
Eco47I GGWCC 4 cut(s) 615, 939, 1061, 1100
Eco53kI GAGCTC 1 cut(s) 1550
Eco57I CTGAAG 2 cut(s) 338, 1467
Eco81I CCTNAGG 1 cut(s) 1609
EcoICRI GAGCTC 1 cut(s) 1550
EcoNI CCTNNNNNAGG 1 cut(s) 1683
EcoO109I RGGNCCY 1 cut(s) 939
EcoRI GAATTC 2 cut(s) 176, 495
EcoRII CCWGG 4 cut(s) 652, 891, 918, 1684
EcoT14I CCWWGG 1 cut(s) 1482
EcoT22I ATGCAT 1 cut(s) 252
EcoT38I GRGCYC 2 cut(s) 1552, 1644
ErhI CCWWGG 1 cut(s) 1482
FaqI GGGAC 2 cut(s) 952, 1113
FbaI TGATCA 3 cut(s) 580, 1414, 1492
Fnu4HI GCNGC 8 cut(s) 343, 397, 424, 600, 1443, 1652, 1655, 1785
FokI GGATG 4 cut(s) 17, 459, 964, 1424
FriOI GRGCYC 2 cut(s) 1552, 1644
Fsp4HI GCNGC 8 cut(s) 343, 397, 424, 600, 1443, 1652, 1655, 1785
FspBI CTAG 3 cut(s) 672, 788, 1544
GluI GCNGC 8 cut(s) 343, 397, 424, 600, 1443, 1652, 1655, 1785
HaeIII GGCC 4 cut(s) 34, 1344, 1607, 1642
HinfI GANTC 7 cut(s) 22, 186, 313, 593, 646, 713, 736
HphI GGTGA 4 cut(s) 868, 1556, 1674, 1700
Hpy166II GTNNAC 1 cut(s) 1396
Hpy8I GTNNAC 1 cut(s) 1396
HpyAV CCTTC 6 cut(s) 368, 1030, 1220, 1442, 1689, 1757
HpyCH4III ACNGT 3 cut(s) 108, 273, 1151
HpyCH4V TGCA 5 cut(s) 201, 250, 1299, 1572, 1796
HpyF10VI GCNNNNNNNGC 7 cut(s) 396, 420, 702, 1556, 1578, 1648, 1793
Ksp22I TGATCA 3 cut(s) 580, 1414, 1492
Kzo9I GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
LguI GCTCTTC 2 cut(s) 535, 744
LmnI GCTCC 5 cut(s) 172, 634, 836, 1532, 1547
Lsp1109I GCAGC 7 cut(s) 354, 408, 586, 1429, 1641, 1663, 1796
LweI GCATC 2 cut(s) 538, 774
MabI ACCWGGT 2 cut(s) 918, 1684
MaeI CTAG 3 cut(s) 672, 788, 1544
MaeIII GTNAC 3 cut(s) 236, 1616, 1816
MalI GATC 9 cut(s) 48, 469, 582, 636, 777, 1416, 1494, 1500, 1773
MboI GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
MhlI GDGCHC 4 cut(s) 462, 1255, 1552, 1644
MlsI TGGCCA 1 cut(s) 1344
MluNI TGGCCA 1 cut(s) 1344
MlyI GAGTC 4 cut(s) 16, 587, 640, 745
MmeI TCCRAC 3 cut(s) 533, 1216, 1619
Mox20I TGGCCA 1 cut(s) 1344
Mph1103I ATGCAT 1 cut(s) 252
MroXI GAANNNNTTC 3 cut(s) 273, 768, 1085
MscI TGGCCA 1 cut(s) 1344
MseI TTAA 1 cut(s) 297
MslI CAYNNNNRTG 2 cut(s) 245, 1391
Msp20I TGGCCA 1 cut(s) 1344
MspA1I CMGCKG 3 cut(s) 1442, 1654, 1787
MspR9I CCNGG 4 cut(s) 654, 893, 920, 1686
Mva1269I GAATGC 1 cut(s) 252
MvaI CCWGG 4 cut(s) 654, 893, 920, 1686
MwoI GCNNNNNNNGC 7 cut(s) 396, 420, 702, 1556, 1578, 1648, 1793
NcoI CCATGG 1 cut(s) 1482
NdeII GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
NheI GCTAGC 1 cut(s) 787
NlaIV GGNNCC 6 cut(s) 616, 940, 1101, 1628, 1642, 1677
NmuCI GTSAC 2 cut(s) 236, 1616
NsiI ATGCAT 1 cut(s) 252
NspI RCATGY 2 cut(s) 254, 1351
PagI TCATGA 1 cut(s) 772
PceI AGGCCT 1 cut(s) 1607
PciI ACATGT 1 cut(s) 1347
PciSI GCTCTTC 2 cut(s) 535, 744
PctI GAATGC 1 cut(s) 252
PdmI GAANNNNTTC 3 cut(s) 273, 768, 1085
PfeI GAWTC 3 cut(s) 186, 313, 713
PflMI CCANNNNNTGG 1 cut(s) 41
PkrI GCNGC 8 cut(s) 344, 398, 425, 601, 1444, 1653, 1656, 1786
PleI GAGTC 4 cut(s) 16, 587, 640, 744
PpsI GAGTC 4 cut(s) 16, 587, 640, 744
PpuMI RGGWCCY 1 cut(s) 939
PscI ACATGT 1 cut(s) 1347
Psp124BI GAGCTC 1 cut(s) 1552
Psp5II RGGWCCY 1 cut(s) 939
Psp6I CCWGG 4 cut(s) 652, 891, 918, 1684
PspGI CCWGG 4 cut(s) 652, 891, 918, 1684
PspN4I GGNNCC 6 cut(s) 616, 940, 1101, 1628, 1642, 1677
PspOMI GGGCCC 1 cut(s) 1640
PspPI GGNCC 6 cut(s) 615, 939, 1061, 1100, 1640, 1641
PspPPI RGGWCCY 1 cut(s) 939
PstNI CAGNNNCTG 2 cut(s) 551, 1445
PvuII CAGCTG 3 cut(s) 1442, 1654, 1787
RsaI GTAC 1 cut(s) 1768
RsaNI GTAC 1 cut(s) 1767
RseI CAYNNNNRTG 2 cut(s) 245, 1391
SacI GAGCTC 1 cut(s) 1552
SapI GCTCTTC 2 cut(s) 535, 744
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 8 cut(s) 343, 397, 424, 600, 1443, 1652, 1655, 1785
Sau3AI GATC 9 cut(s) 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771
Sau96I GGNCC 6 cut(s) 615, 939, 1061, 1100, 1640, 1641
SchI GAGTC 4 cut(s) 16, 587, 640, 745
ScrFI CCNGG 4 cut(s) 654, 893, 920, 1686
SduI GDGCHC 4 cut(s) 462, 1255, 1552, 1644
SexAI ACCWGGT 2 cut(s) 918, 1684
SfaNI GCATC 2 cut(s) 538, 774
SinI GGWCC 4 cut(s) 615, 939, 1061, 1100
SmiMI CAYNNNNRTG 2 cut(s) 245, 1391
SmlI CTYRAG 2 cut(s) 119, 1367
SmoI CTYRAG 2 cut(s) 119, 1367
SseBI AGGCCT 1 cut(s) 1607
SsiI CCGC 1 cut(s) 423
SspMI CTAG 3 cut(s) 672, 788, 1544
SstI GAGCTC 1 cut(s) 1552
StuI AGGCCT 1 cut(s) 1607
StyD4I CCNGG 4 cut(s) 652, 891, 918, 1684
StyI CCWWGG 1 cut(s) 1482
TaaI ACNGT 3 cut(s) 108, 273, 1151
TaqI TCGA 3 cut(s) 184, 347, 1091
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 3 cut(s) 186, 313, 713
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TscAI CASTG 3 cut(s) 673, 1083, 1651
TseFI GTSAC 2 cut(s) 236, 1616
TseI GCWGC 7 cut(s) 342, 396, 599, 1442, 1651, 1654, 1784
Tsp45I GTSAC 2 cut(s) 236, 1616
TspGWI ACGGA 2 cut(s) 426, 1766
TspRI CASTG 3 cut(s) 673, 1083, 1651
Van91I CCANNNNNTGG 1 cut(s) 41
VpaK11BI GGWCC 4 cut(s) 615, 939, 1061, 1100
XagI CCTNNNNNAGG 1 cut(s) 1683
XapI RAATTY 3 cut(s) 176, 495, 1084
XceI RCATGY 2 cut(s) 254, 1351
XmnI GAANNNNTTC 3 cut(s) 273, 768, 1085
XspI CTAG 3 cut(s) 672, 788, 1544
Zsp2I ATGCAT 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.