C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41600 |
| malus_domestica | MD03G1043000.v1.1 MD11G1046000.v1.1 |
| prunus_persica | Prupe.6G035400_v2.0.a1 |
| pyrus_communis | pycom03g03320 pycom11g03730 |
| rosa_chinensis | RchiOBHm_Chr5g0074621 |
| rosa_laevigata | RLG00000036491 |
| rosa_multiflora | Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00006960 |
| rosa_rugosa | Rorug05G0433300 |
| rosa_samantha | Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1697 |
| AccB1I | GGYRCC | 2 cut(s) | 1626, 1675 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 41 |
| AciI | CCGC | 1 cut(s) | 423 |
| AcoI | YGGCCR | 2 cut(s) | 32, 1342 |
| AcsI | RAATTY | 3 cut(s) | 176, 495, 1084 |
| AcuI | CTGAAG | 2 cut(s) | 338, 1467 |
| AdeI | CACNNNGTG | 1 cut(s) | 1688 |
| AfaI | GTAC | 1 cut(s) | 1768 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 41, 1685 |
| AflIII | ACRYGT | 1 cut(s) | 1347 |
| AgsI | TTSAA | 7 cut(s) | 11, 257, 374, 500, 749, 1133, 1760 |
| AjnI | CCWGG | 4 cut(s) | 652, 891, 918, 1684 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 107, 139, 791, 823, 1028, 1060, 1218, 1250 |
| Alw21I | GWGCWC | 2 cut(s) | 1255, 1552 |
| Alw26I | GTCTC | 6 cut(s) | 14, 77, 453, 666, 743, 1277 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 551, 1445 |
| AoxI | GGCC | 4 cut(s) | 32, 1342, 1605, 1640 |
| ApaI | GGGCCC | 1 cut(s) | 1644 |
| ApeKI | GCWGC | 7 cut(s) | 342, 396, 599, 1442, 1651, 1654, 1784 |
| ApoI | RAATTY | 3 cut(s) | 176, 495, 1084 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1693, 1725 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 273, 768, 1085 |
| AspS9I | GGNCC | 6 cut(s) | 615, 939, 1061, 1100, 1640, 1641 |
| AsuHPI | GGTGA | 4 cut(s) | 868, 1556, 1674, 1700 |
| AsuNHI | GCTAGC | 1 cut(s) | 787 |
| AvaII | GGWCC | 4 cut(s) | 615, 939, 1061, 1100 |
| AxyI | CCTNAGG | 1 cut(s) | 1609 |
| BaeGI | GKGCMC | 2 cut(s) | 462, 1644 |
| BalI | TGGCCA | 1 cut(s) | 1344 |
| BanI | GGYRCC | 2 cut(s) | 1626, 1675 |
| BanII | GRGCYC | 2 cut(s) | 1552, 1644 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1274, 1306 |
| BauI | CACGAG | 1 cut(s) | 36 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 2 cut(s) | 1255, 1552 |
| BbvI | GCAGC | 7 cut(s) | 354, 408, 586, 1429, 1641, 1663, 1796 |
| BccI | CCATC | 5 cut(s) | 751, 985, 1016, 1081, 1284 |
| BciT130I | CCWGG | 4 cut(s) | 654, 893, 920, 1686 |
| BclI | TGATCA | 3 cut(s) | 580, 1414, 1492 |
| BcoDI | GTCTC | 6 cut(s) | 14, 77, 453, 666, 743, 1277 |
| BfaI | CTAG | 3 cut(s) | 672, 788, 1544 |
| BfuAI | ACCTGC | 1 cut(s) | 1697 |
| BisI | GCNGC | 8 cut(s) | 343, 397, 424, 600, 1443, 1652, 1655, 1785 |
| BlsI | GCNGC | 8 cut(s) | 344, 398, 425, 601, 1444, 1653, 1656, 1786 |
| Bme1390I | CCNGG | 4 cut(s) | 654, 893, 920, 1686 |
| Bme18I | GGWCC | 4 cut(s) | 615, 939, 1061, 1100 |
| BmgT120I | GGNCC | 6 cut(s) | 615, 939, 1061, 1100, 1640, 1641 |
| BmiI | GGNNCC | 6 cut(s) | 616, 940, 1101, 1628, 1642, 1677 |
| BmrFI | CCNGG | 4 cut(s) | 654, 893, 920, 1686 |
| BmrI | ACTGGG | 1 cut(s) | 1647 |
| BmsI | GCATC | 2 cut(s) | 538, 774 |
| BmtI | GCTAGC | 1 cut(s) | 791 |
| BmuI | ACTGGG | 1 cut(s) | 1647 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 926, 958 |
| Bpu10I | CCTNAGC | 3 cut(s) | 217, 1254, 1528 |
| BpuEI | CTTGAG | 2 cut(s) | 104, 1352 |
| BsaBI | GATNNNNATC | 2 cut(s) | 582, 1497 |
| BsaI | GGTCTC | 1 cut(s) | 666 |
| BsaJI | CCNNGG | 1 cut(s) | 1482 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 41, 1685 |
| Bse1I | ACTGG | 2 cut(s) | 1642, 1668 |
| Bse21I | CCTNAGG | 1 cut(s) | 1609 |
| Bse8I | GATNNNNATC | 2 cut(s) | 582, 1497 |
| BseBI | CCWGG | 4 cut(s) | 654, 893, 920, 1686 |
| BseDI | CCNNGG | 1 cut(s) | 1482 |
| BseGI | GGATG | 4 cut(s) | 10, 472, 977, 1417 |
| BseJI | GATNNNNATC | 2 cut(s) | 582, 1497 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 41, 1685 |
| BseNI | ACTGG | 2 cut(s) | 1642, 1668 |
| BseRI | GAGGAG | 4 cut(s) | 159, 495, 1204, 1213 |
| BseSI | GKGCMC | 2 cut(s) | 462, 1644 |
| BseXI | GCAGC | 7 cut(s) | 354, 408, 586, 1429, 1641, 1663, 1796 |
| BshFI | GGCC | 4 cut(s) | 34, 1344, 1607, 1642 |
| BshNI | GGYRCC | 2 cut(s) | 1626, 1675 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1255, 1552 |
| BslFI | GGGAC | 2 cut(s) | 952, 1113 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 41, 1685 |
| BsmAI | GTCTC | 6 cut(s) | 14, 77, 453, 666, 743, 1277 |
| BsmFI | GGGAC | 2 cut(s) | 952, 1113 |
| BsmI | GAATGC | 1 cut(s) | 252 |
| BsnI | GGCC | 4 cut(s) | 34, 1344, 1607, 1642 |
| Bso31I | GGTCTC | 1 cut(s) | 666 |
| Bsp120I | GGGCCC | 1 cut(s) | 1640 |
| Bsp1286I | GDGCHC | 4 cut(s) | 462, 1255, 1552, 1644 |
| Bsp143I | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| Bsp19I | CCATGG | 1 cut(s) | 1482 |
| BspACI | CCGC | 1 cut(s) | 423 |
| BspANI | GGCC | 4 cut(s) | 34, 1344, 1607, 1642 |
| BspHI | TCATGA | 1 cut(s) | 772 |
| BspLI | GGNNCC | 6 cut(s) | 616, 940, 1101, 1628, 1642, 1677 |
| BspMI | ACCTGC | 1 cut(s) | 1697 |
| BspOI | GCTAGC | 1 cut(s) | 791 |
| BspQI | GCTCTTC | 2 cut(s) | 535, 744 |
| BspT107I | GGYRCC | 2 cut(s) | 1626, 1675 |
| BspTNI | GGTCTC | 1 cut(s) | 666 |
| BsrI | ACTGG | 2 cut(s) | 1642, 1668 |
| BssECI | CCNNGG | 1 cut(s) | 1482 |
| BssMI | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| BssSI | CACGAG | 1 cut(s) | 36 |
| BssT1I | CCWWGG | 1 cut(s) | 1482 |
| Bst2BI | CACGAG | 1 cut(s) | 36 |
| Bst2UI | CCWGG | 4 cut(s) | 654, 893, 920, 1686 |
| Bst4CI | ACNGT | 3 cut(s) | 108, 273, 1151 |
| Bst6I | CTCTTC | 6 cut(s) | 535, 744, 944, 1128, 1181, 1190 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1578 |
| BstC8I | GCNNGC | 8 cut(s) | 43, 283, 789, 1176, 1180, 1519, 1696, 1789 |
| BstDSI | CCRYGG | 1 cut(s) | 1482 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1683 |
| BstF5I | GGATG | 4 cut(s) | 10, 472, 977, 1417 |
| BstKTI | GATC | 9 cut(s) | 49, 470, 583, 637, 778, 1417, 1495, 1501, 1774 |
| BstMAI | GTCTC | 6 cut(s) | 14, 77, 453, 666, 743, 1277 |
| BstMBI | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 396, 420, 702, 1556, 1578, 1648, 1793 |
| BstNI | CCWGG | 4 cut(s) | 654, 893, 920, 1686 |
| BstNSI | RCATGY | 2 cut(s) | 254, 1351 |
| BstSCI | CCNGG | 4 cut(s) | 652, 891, 918, 1684 |
| BstSLI | GKGCMC | 2 cut(s) | 462, 1644 |
| BstV1I | GCAGC | 7 cut(s) | 354, 408, 586, 1429, 1641, 1663, 1796 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1637 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1609 |
| BsuRI | GGCC | 4 cut(s) | 34, 1344, 1607, 1642 |
| BtgI | CCRYGG | 1 cut(s) | 1482 |
| BtsCI | GGATG | 4 cut(s) | 10, 472, 977, 1417 |
| BtsI | GCAGTG | 1 cut(s) | 666 |
| BtsIMutI | CAGTG | 3 cut(s) | 666, 1083, 1644 |
| BveI | ACCTGC | 1 cut(s) | 1697 |
| Cac8I | GCNNGC | 8 cut(s) | 43, 283, 789, 1176, 1180, 1519, 1696, 1789 |
| CaiI | CAGNNNCTG | 2 cut(s) | 551, 1445 |
| CciI | TCATGA | 1 cut(s) | 772 |
| Cfr13I | GGNCC | 6 cut(s) | 615, 939, 1061, 1100, 1640, 1641 |
| CsiI | ACCWGGT | 2 cut(s) | 918, 1684 |
| Csp6I | GTAC | 1 cut(s) | 1767 |
| CviQI | GTAC | 1 cut(s) | 1767 |
| DpnI | GATC | 9 cut(s) | 48, 469, 582, 636, 777, 1416, 1494, 1500, 1773 |
| DpnII | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| DraIII | CACNNNGTG | 1 cut(s) | 1688 |
| EaeI | YGGCCR | 2 cut(s) | 32, 1342 |
| Eam1104I | CTCTTC | 6 cut(s) | 535, 744, 944, 1128, 1181, 1190 |
| EarI | CTCTTC | 6 cut(s) | 535, 744, 944, 1128, 1181, 1190 |
| Ecl136II | GAGCTC | 1 cut(s) | 1550 |
| Eco130I | CCWWGG | 1 cut(s) | 1482 |
| Eco147I | AGGCCT | 1 cut(s) | 1607 |
| Eco24I | GRGCYC | 2 cut(s) | 1552, 1644 |
| Eco31I | GGTCTC | 1 cut(s) | 666 |
| Eco47I | GGWCC | 4 cut(s) | 615, 939, 1061, 1100 |
| Eco53kI | GAGCTC | 1 cut(s) | 1550 |
| Eco57I | CTGAAG | 2 cut(s) | 338, 1467 |
| Eco81I | CCTNAGG | 1 cut(s) | 1609 |
| EcoICRI | GAGCTC | 1 cut(s) | 1550 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1683 |
| EcoO109I | RGGNCCY | 1 cut(s) | 939 |
| EcoRI | GAATTC | 2 cut(s) | 176, 495 |
| EcoRII | CCWGG | 4 cut(s) | 652, 891, 918, 1684 |
| EcoT14I | CCWWGG | 1 cut(s) | 1482 |
| EcoT22I | ATGCAT | 1 cut(s) | 252 |
| EcoT38I | GRGCYC | 2 cut(s) | 1552, 1644 |
| ErhI | CCWWGG | 1 cut(s) | 1482 |
| FaqI | GGGAC | 2 cut(s) | 952, 1113 |
| FbaI | TGATCA | 3 cut(s) | 580, 1414, 1492 |
| Fnu4HI | GCNGC | 8 cut(s) | 343, 397, 424, 600, 1443, 1652, 1655, 1785 |
| FokI | GGATG | 4 cut(s) | 17, 459, 964, 1424 |
| FriOI | GRGCYC | 2 cut(s) | 1552, 1644 |
| Fsp4HI | GCNGC | 8 cut(s) | 343, 397, 424, 600, 1443, 1652, 1655, 1785 |
| FspBI | CTAG | 3 cut(s) | 672, 788, 1544 |
| GluI | GCNGC | 8 cut(s) | 343, 397, 424, 600, 1443, 1652, 1655, 1785 |
| HaeIII | GGCC | 4 cut(s) | 34, 1344, 1607, 1642 |
| HinfI | GANTC | 7 cut(s) | 22, 186, 313, 593, 646, 713, 736 |
| HphI | GGTGA | 4 cut(s) | 868, 1556, 1674, 1700 |
| Hpy166II | GTNNAC | 1 cut(s) | 1396 |
| Hpy8I | GTNNAC | 1 cut(s) | 1396 |
| HpyAV | CCTTC | 6 cut(s) | 368, 1030, 1220, 1442, 1689, 1757 |
| HpyCH4III | ACNGT | 3 cut(s) | 108, 273, 1151 |
| HpyCH4V | TGCA | 5 cut(s) | 201, 250, 1299, 1572, 1796 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 396, 420, 702, 1556, 1578, 1648, 1793 |
| Ksp22I | TGATCA | 3 cut(s) | 580, 1414, 1492 |
| Kzo9I | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| LguI | GCTCTTC | 2 cut(s) | 535, 744 |
| LmnI | GCTCC | 5 cut(s) | 172, 634, 836, 1532, 1547 |
| Lsp1109I | GCAGC | 7 cut(s) | 354, 408, 586, 1429, 1641, 1663, 1796 |
| LweI | GCATC | 2 cut(s) | 538, 774 |
| MabI | ACCWGGT | 2 cut(s) | 918, 1684 |
| MaeI | CTAG | 3 cut(s) | 672, 788, 1544 |
| MaeIII | GTNAC | 3 cut(s) | 236, 1616, 1816 |
| MalI | GATC | 9 cut(s) | 48, 469, 582, 636, 777, 1416, 1494, 1500, 1773 |
| MboI | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| MhlI | GDGCHC | 4 cut(s) | 462, 1255, 1552, 1644 |
| MlsI | TGGCCA | 1 cut(s) | 1344 |
| MluNI | TGGCCA | 1 cut(s) | 1344 |
| MlyI | GAGTC | 4 cut(s) | 16, 587, 640, 745 |
| MmeI | TCCRAC | 3 cut(s) | 533, 1216, 1619 |
| Mox20I | TGGCCA | 1 cut(s) | 1344 |
| Mph1103I | ATGCAT | 1 cut(s) | 252 |
| MroXI | GAANNNNTTC | 3 cut(s) | 273, 768, 1085 |
| MscI | TGGCCA | 1 cut(s) | 1344 |
| MseI | TTAA | 1 cut(s) | 297 |
| MslI | CAYNNNNRTG | 2 cut(s) | 245, 1391 |
| Msp20I | TGGCCA | 1 cut(s) | 1344 |
| MspA1I | CMGCKG | 3 cut(s) | 1442, 1654, 1787 |
| MspR9I | CCNGG | 4 cut(s) | 654, 893, 920, 1686 |
| Mva1269I | GAATGC | 1 cut(s) | 252 |
| MvaI | CCWGG | 4 cut(s) | 654, 893, 920, 1686 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 396, 420, 702, 1556, 1578, 1648, 1793 |
| NcoI | CCATGG | 1 cut(s) | 1482 |
| NdeII | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| NheI | GCTAGC | 1 cut(s) | 787 |
| NlaIV | GGNNCC | 6 cut(s) | 616, 940, 1101, 1628, 1642, 1677 |
| NmuCI | GTSAC | 2 cut(s) | 236, 1616 |
| NsiI | ATGCAT | 1 cut(s) | 252 |
| NspI | RCATGY | 2 cut(s) | 254, 1351 |
| PagI | TCATGA | 1 cut(s) | 772 |
| PceI | AGGCCT | 1 cut(s) | 1607 |
| PciI | ACATGT | 1 cut(s) | 1347 |
| PciSI | GCTCTTC | 2 cut(s) | 535, 744 |
| PctI | GAATGC | 1 cut(s) | 252 |
| PdmI | GAANNNNTTC | 3 cut(s) | 273, 768, 1085 |
| PfeI | GAWTC | 3 cut(s) | 186, 313, 713 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 41 |
| PkrI | GCNGC | 8 cut(s) | 344, 398, 425, 601, 1444, 1653, 1656, 1786 |
| PleI | GAGTC | 4 cut(s) | 16, 587, 640, 744 |
| PpsI | GAGTC | 4 cut(s) | 16, 587, 640, 744 |
| PpuMI | RGGWCCY | 1 cut(s) | 939 |
| PscI | ACATGT | 1 cut(s) | 1347 |
| Psp124BI | GAGCTC | 1 cut(s) | 1552 |
| Psp5II | RGGWCCY | 1 cut(s) | 939 |
| Psp6I | CCWGG | 4 cut(s) | 652, 891, 918, 1684 |
| PspGI | CCWGG | 4 cut(s) | 652, 891, 918, 1684 |
| PspN4I | GGNNCC | 6 cut(s) | 616, 940, 1101, 1628, 1642, 1677 |
| PspOMI | GGGCCC | 1 cut(s) | 1640 |
| PspPI | GGNCC | 6 cut(s) | 615, 939, 1061, 1100, 1640, 1641 |
| PspPPI | RGGWCCY | 1 cut(s) | 939 |
| PstNI | CAGNNNCTG | 2 cut(s) | 551, 1445 |
| PvuII | CAGCTG | 3 cut(s) | 1442, 1654, 1787 |
| RsaI | GTAC | 1 cut(s) | 1768 |
| RsaNI | GTAC | 1 cut(s) | 1767 |
| RseI | CAYNNNNRTG | 2 cut(s) | 245, 1391 |
| SacI | GAGCTC | 1 cut(s) | 1552 |
| SapI | GCTCTTC | 2 cut(s) | 535, 744 |
| SaqAI | TTAA | 1 cut(s) | 297 |
| SatI | GCNGC | 8 cut(s) | 343, 397, 424, 600, 1443, 1652, 1655, 1785 |
| Sau3AI | GATC | 9 cut(s) | 46, 467, 580, 634, 775, 1414, 1492, 1498, 1771 |
| Sau96I | GGNCC | 6 cut(s) | 615, 939, 1061, 1100, 1640, 1641 |
| SchI | GAGTC | 4 cut(s) | 16, 587, 640, 745 |
| ScrFI | CCNGG | 4 cut(s) | 654, 893, 920, 1686 |
| SduI | GDGCHC | 4 cut(s) | 462, 1255, 1552, 1644 |
| SexAI | ACCWGGT | 2 cut(s) | 918, 1684 |
| SfaNI | GCATC | 2 cut(s) | 538, 774 |
| SinI | GGWCC | 4 cut(s) | 615, 939, 1061, 1100 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 245, 1391 |
| SmlI | CTYRAG | 2 cut(s) | 119, 1367 |
| SmoI | CTYRAG | 2 cut(s) | 119, 1367 |
| SseBI | AGGCCT | 1 cut(s) | 1607 |
| SsiI | CCGC | 1 cut(s) | 423 |
| SspMI | CTAG | 3 cut(s) | 672, 788, 1544 |
| SstI | GAGCTC | 1 cut(s) | 1552 |
| StuI | AGGCCT | 1 cut(s) | 1607 |
| StyD4I | CCNGG | 4 cut(s) | 652, 891, 918, 1684 |
| StyI | CCWWGG | 1 cut(s) | 1482 |
| TaaI | ACNGT | 3 cut(s) | 108, 273, 1151 |
| TaqI | TCGA | 3 cut(s) | 184, 347, 1091 |
| TauI | GCSGC | 1 cut(s) | 426 |
| TfiI | GAWTC | 3 cut(s) | 186, 313, 713 |
| Tru1I | TTAA | 1 cut(s) | 297 |
| Tru9I | TTAA | 1 cut(s) | 297 |
| TscAI | CASTG | 3 cut(s) | 673, 1083, 1651 |
| TseFI | GTSAC | 2 cut(s) | 236, 1616 |
| TseI | GCWGC | 7 cut(s) | 342, 396, 599, 1442, 1651, 1654, 1784 |
| Tsp45I | GTSAC | 2 cut(s) | 236, 1616 |
| TspGWI | ACGGA | 2 cut(s) | 426, 1766 |
| TspRI | CASTG | 3 cut(s) | 673, 1083, 1651 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 41 |
| VpaK11BI | GGWCC | 4 cut(s) | 615, 939, 1061, 1100 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1683 |
| XapI | RAATTY | 3 cut(s) | 176, 495, 1084 |
| XceI | RCATGY | 2 cut(s) | 254, 1351 |
| XmnI | GAANNNNTTC | 3 cut(s) | 273, 768, 1085 |
| XspI | CTAG | 3 cut(s) | 672, 788, 1544 |
| Zsp2I | ATGCAT | 1 cut(s) | 252 |