C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41600 |
| malus_domestica | MD03G1043000.v1.1 MD11G1046000.v1.1 |
| prunus_persica | Prupe.6G035400_v2.0.a1 |
| pyrus_communis | pycom03g03320 pycom11g03730 |
| rosa_chinensis | RchiOBHm_Chr5g0074621 |
| rosa_laevigata | RLG00000036491 |
| rosa_multiflora | Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00006960 |
| rosa_rugosa | Rorug05G0433300 |
| rosa_samantha | Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1503 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1141 |
| AccBSI | CCGCTC | 1 cut(s) | 1049 |
| AciI | CCGC | 1 cut(s) | 1049 |
| AclWI | GGATC | 3 cut(s) | 516, 792, 1376 |
| AcsI | RAATTY | 1 cut(s) | 299 |
| AfaI | GTAC | 5 cut(s) | 307, 313, 622, 631, 1190 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 419, 837, 1141 |
| AflIII | ACRYGT | 1 cut(s) | 1152 |
| AgeI | ACCGGT | 1 cut(s) | 1370 |
| AgsI | TTSAA | 4 cut(s) | 462, 854, 934, 1174 |
| AhlI | ACTAGT | 2 cut(s) | 308, 632 |
| AjnI | CCWGG | 1 cut(s) | 830 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 749, 781, 1013, 1045 |
| Alw21I | GWGCWC | 2 cut(s) | 15, 254 |
| Alw26I | GTCTC | 3 cut(s) | 606, 650, 1365 |
| AlwI | GGATC | 3 cut(s) | 516, 792, 1376 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1311 |
| AoxI | GGCC | 3 cut(s) | 410, 551, 1414 |
| ApeKI | GCWGC | 2 cut(s) | 500, 1262 |
| ApoI | RAATTY | 1 cut(s) | 299 |
| AsiGI | ACCGGT | 1 cut(s) | 1370 |
| AspLEI | GCGC | 1 cut(s) | 1410 |
| AspS9I | GGNCC | 3 cut(s) | 551, 1368, 1373 |
| AsuC2I | CCSGG | 3 cut(s) | 190, 404, 1405 |
| AsuHPI | GGTGA | 4 cut(s) | 292, 341, 1246, 1289 |
| AsuII | TTCGAA | 1 cut(s) | 257 |
| AvaII | GGWCC | 2 cut(s) | 1368, 1373 |
| BanII | GRGCYC | 1 cut(s) | 254 |
| BbsI | GAAGAC | 1 cut(s) | 1041 |
| Bbv12I | GWGCWC | 2 cut(s) | 15, 254 |
| BbvCI | CCTCAGC | 2 cut(s) | 504, 744 |
| BbvI | GCAGC | 2 cut(s) | 512, 1274 |
| BccI | CCATC | 3 cut(s) | 79, 860, 1089 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 119, 153, 1399, 1433 |
| BciT130I | CCWGG | 1 cut(s) | 832 |
| BclI | TGATCA | 4 cut(s) | 72, 243, 1204, 1282 |
| BcnI | CCSGG | 3 cut(s) | 190, 404, 1405 |
| BcoDI | GTCTC | 3 cut(s) | 606, 650, 1365 |
| BcuI | ACTAGT | 2 cut(s) | 308, 632 |
| BfaI | CTAG | 5 cut(s) | 309, 594, 633, 893, 903 |
| BisI | GCNGC | 2 cut(s) | 501, 1263 |
| BlsI | GCNGC | 2 cut(s) | 502, 1264 |
| BmcAI | AGTACT | 2 cut(s) | 307, 313 |
| Bme1390I | CCNGG | 4 cut(s) | 190, 404, 832, 1405 |
| Bme18I | GGWCC | 2 cut(s) | 1368, 1373 |
| BmgT120I | GGNCC | 3 cut(s) | 551, 1368, 1373 |
| BmiI | GGNNCC | 1 cut(s) | 570 |
| BmrFI | CCNGG | 4 cut(s) | 190, 404, 832, 1405 |
| BmsI | GCATC | 1 cut(s) | 463 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1153 |
| BpiI | GAAGAC | 1 cut(s) | 1041 |
| BpmI | CTGGAG | 1 cut(s) | 1497 |
| Bpu10I | CCTNAGC | 2 cut(s) | 504, 744 |
| Bpu14I | TTCGAA | 1 cut(s) | 257 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 708, 1044 |
| BpuMI | CCSGG | 3 cut(s) | 190, 404, 1405 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1209 |
| BsaI | GGTCTC | 2 cut(s) | 606, 1365 |
| BsaWI | WCCGGW | 1 cut(s) | 1370 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1038, 1068 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 419, 837, 1141 |
| Bse118I | RCCGGY | 2 cut(s) | 271, 1370 |
| Bse1I | ACTGG | 3 cut(s) | 324, 1186, 1370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1209 |
| BseBI | CCWGG | 1 cut(s) | 832 |
| BseGI | GGATG | 2 cut(s) | 871, 1182 |
| BseJI | GATNNNNATC | 1 cut(s) | 1209 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 419, 837, 1141 |
| BseMII | CTCAG | 5 cut(s) | 24, 33, 495, 645, 735 |
| BseNI | ACTGG | 3 cut(s) | 324, 1186, 1370 |
| BseRI | GAGGAG | 8 cut(s) | 75, 132, 423, 761, 875, 962, 965, 1018 |
| BseXI | GCAGC | 2 cut(s) | 512, 1274 |
| BseYI | CCCAGC | 2 cut(s) | 527, 919 |
| BshFI | GGCC | 3 cut(s) | 412, 553, 1416 |
| BshTI | ACCGGT | 1 cut(s) | 1370 |
| BsiHKAI | GWGCWC | 2 cut(s) | 15, 254 |
| BsiSI | CCGG | 5 cut(s) | 189, 272, 404, 1371, 1404 |
| BslFI | GGGAC | 2 cut(s) | 252, 544 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 419, 837, 1141 |
| BsmAI | GTCTC | 3 cut(s) | 606, 650, 1365 |
| BsmFI | GGGAC | 2 cut(s) | 252, 544 |
| BsmI | GAATGC | 1 cut(s) | 222 |
| BsnI | GGCC | 3 cut(s) | 412, 553, 1416 |
| Bso31I | GGTCTC | 2 cut(s) | 606, 1365 |
| Bsp119I | TTCGAA | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 254 |
| BspACI | CCGC | 1 cut(s) | 1049 |
| BspANI | GGCC | 3 cut(s) | 412, 553, 1416 |
| BspCNI | CTCAG | 5 cut(s) | 25, 34, 496, 646, 736 |
| BspHI | TCATGA | 1 cut(s) | 768 |
| BspLI | GGNNCC | 1 cut(s) | 570 |
| BspPI | GGATC | 3 cut(s) | 516, 792, 1376 |
| BspQI | GCTCTTC | 1 cut(s) | 259 |
| BspT104I | TTCGAA | 1 cut(s) | 257 |
| BspTNI | GGTCTC | 2 cut(s) | 606, 1365 |
| BsrBI | CCGCTC | 1 cut(s) | 1049 |
| BsrFI | RCCGGY | 2 cut(s) | 271, 1370 |
| BsrI | ACTGG | 3 cut(s) | 324, 1186, 1370 |
| BssAI | RCCGGY | 2 cut(s) | 271, 1370 |
| Bst2UI | CCWGG | 1 cut(s) | 832 |
| Bst4CI | ACNGT | 2 cut(s) | 808, 944 |
| Bst6I | CTCTTC | 3 cut(s) | 259, 830, 1007 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1110 |
| BstBI | TTCGAA | 1 cut(s) | 257 |
| BstC8I | GCNNGC | 1 cut(s) | 990 |
| BstDEI | CTNAG | 5 cut(s) | 33, 42, 504, 654, 744 |
| BstF5I | GGATG | 2 cut(s) | 871, 1182 |
| BstHHI | GCGC | 1 cut(s) | 1410 |
| BstMAI | GTCTC | 3 cut(s) | 606, 650, 1365 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 533, 749, 1055, 1110, 1487 |
| BstNI | CCWGG | 1 cut(s) | 832 |
| BstNSI | RCATGY | 2 cut(s) | 224, 1156 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1153 |
| BstSCI | CCNGG | 4 cut(s) | 188, 402, 830, 1403 |
| BstV1I | GCAGC | 2 cut(s) | 512, 1274 |
| BstV2I | GAAGAC | 1 cut(s) | 1041 |
| BsuRI | GGCC | 3 cut(s) | 412, 553, 1416 |
| BtsCI | GGATG | 2 cut(s) | 871, 1182 |
| BtsIMutI | CAGTG | 5 cut(s) | 39, 294, 331, 949, 1363 |
| Cac8I | GCNNGC | 1 cut(s) | 990 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1311 |
| CciI | TCATGA | 1 cut(s) | 768 |
| CfoI | GCGC | 1 cut(s) | 1410 |
| Cfr10I | RCCGGY | 2 cut(s) | 271, 1370 |
| Cfr13I | GGNCC | 3 cut(s) | 551, 1368, 1373 |
| Csp6I | GTAC | 5 cut(s) | 306, 312, 621, 630, 1189 |
| CspAI | ACCGGT | 1 cut(s) | 1370 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1255, 1290 |
| CviAII | CATG | 9 cut(s) | 211, 221, 391, 704, 769, 997, 1153, 1202, 1280 |
| CviQI | GTAC | 5 cut(s) | 306, 312, 621, 630, 1189 |
| DdeI | CTNAG | 5 cut(s) | 33, 42, 504, 654, 744 |
| Eam1104I | CTCTTC | 3 cut(s) | 259, 830, 1007 |
| EarI | CTCTTC | 3 cut(s) | 259, 830, 1007 |
| Ecl136II | GAGCTC | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 2 cut(s) | 412, 1416 |
| Eco24I | GRGCYC | 1 cut(s) | 254 |
| Eco31I | GGTCTC | 2 cut(s) | 606, 1365 |
| Eco47I | GGWCC | 2 cut(s) | 1368, 1373 |
| Eco53kI | GAGCTC | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 252 |
| EcoRI | GAATTC | 1 cut(s) | 299 |
| EcoRII | CCWGG | 1 cut(s) | 830 |
| EcoT22I | ATGCAT | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 254 |
| FaeI | CATG | 9 cut(s) | 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283 |
| FaqI | GGGAC | 2 cut(s) | 252, 544 |
| FatI | CATG | 9 cut(s) | 210, 220, 390, 703, 768, 996, 1152, 1201, 1279 |
| FauNDI | CATATG | 1 cut(s) | 1353 |
| FbaI | TGATCA | 4 cut(s) | 72, 243, 1204, 1282 |
| Fnu4HI | GCNGC | 2 cut(s) | 501, 1263 |
| FokI | GGATG | 2 cut(s) | 878, 1169 |
| FriOI | GRGCYC | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 2 cut(s) | 501, 1263 |
| FspBI | CTAG | 5 cut(s) | 309, 594, 633, 893, 903 |
| GlaI | GCGC | 1 cut(s) | 1409 |
| GluI | GCNGC | 2 cut(s) | 501, 1263 |
| GsaI | CCCAGC | 2 cut(s) | 531, 923 |
| GsuI | CTGGAG | 1 cut(s) | 1497 |
| HaeIII | GGCC | 3 cut(s) | 412, 553, 1416 |
| HapII | CCGG | 5 cut(s) | 189, 272, 404, 1371, 1404 |
| HhaI | GCGC | 1 cut(s) | 1410 |
| Hin1II | CATG | 9 cut(s) | 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283 |
| Hin6I | GCGC | 1 cut(s) | 1408 |
| HinP1I | GCGC | 1 cut(s) | 1408 |
| HincII | GTYRAC | 1 cut(s) | 1276 |
| HindII | GTYRAC | 1 cut(s) | 1276 |
| HindIII | AAGCTT | 1 cut(s) | 848 |
| HinfI | GANTC | 6 cut(s) | 185, 320, 521, 540, 907, 1308 |
| HpaII | CCGG | 5 cut(s) | 189, 272, 404, 1371, 1404 |
| HphI | GGTGA | 4 cut(s) | 292, 341, 1246, 1289 |
| Hpy166II | GTNNAC | 2 cut(s) | 332, 1276 |
| Hpy188III | TCNNGA | 8 cut(s) | 82, 247, 572, 769, 788, 1061, 1174, 1476 |
| Hpy8I | GTNNAC | 2 cut(s) | 332, 1276 |
| HpyAV | CCTTC | 2 cut(s) | 1011, 1037 |
| HpyCH4III | ACNGT | 2 cut(s) | 808, 944 |
| HpyCH4V | TGCA | 7 cut(s) | 220, 342, 992, 1104, 1113, 1305, 1490 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 533, 749, 1055, 1110, 1487 |
| HpyF3I | CTNAG | 5 cut(s) | 33, 42, 504, 654, 744 |
| Hsp92II | CATG | 9 cut(s) | 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283 |
| HspAI | GCGC | 1 cut(s) | 1408 |
| Ksp22I | TGATCA | 4 cut(s) | 72, 243, 1204, 1282 |
| LguI | GCTCTTC | 1 cut(s) | 259 |
| LmnI | GCTCC | 6 cut(s) | 145, 458, 740, 916, 1046, 1478 |
| Lsp1109I | GCAGC | 2 cut(s) | 512, 1274 |
| LweI | GCATC | 1 cut(s) | 463 |
| MaeI | CTAG | 5 cut(s) | 309, 594, 633, 893, 903 |
| MaeIII | GTNAC | 5 cut(s) | 206, 396, 1295, 1313, 1510 |
| MbiI | CCGCTC | 1 cut(s) | 1049 |
| MboII | GAAGA | 7 cut(s) | 246, 847, 1021, 1024, 1033, 1046, 1488 |
| MhlI | GDGCHC | 2 cut(s) | 15, 254 |
| MluCI | AATT | 8 cut(s) | 146, 299, 423, 763, 810, 855, 1028, 1504 |
| MlyI | GAGTC | 1 cut(s) | 194 |
| MmeI | TCCRAC | 2 cut(s) | 663, 1352 |
| Mph1103I | ATGCAT | 1 cut(s) | 222 |
| MseI | TTAA | 2 cut(s) | 582, 1516 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspA1I | CMGCKG | 1 cut(s) | 503 |
| MspI | CCGG | 5 cut(s) | 189, 272, 404, 1371, 1404 |
| MspR9I | CCNGG | 4 cut(s) | 190, 404, 832, 1405 |
| Mva1269I | GAATGC | 1 cut(s) | 222 |
| MvaI | CCWGG | 1 cut(s) | 832 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 533, 749, 1055, 1110, 1487 |
| NciI | CCSGG | 3 cut(s) | 190, 404, 1405 |
| NdeI | CATATG | 1 cut(s) | 1353 |
| NlaIII | CATG | 9 cut(s) | 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283 |
| NlaIV | GGNNCC | 1 cut(s) | 570 |
| NmuCI | GTSAC | 3 cut(s) | 206, 396, 1295 |
| NsiI | ATGCAT | 1 cut(s) | 222 |
| NspI | RCATGY | 2 cut(s) | 224, 1156 |
| NspV | TTCGAA | 1 cut(s) | 257 |
| PagI | TCATGA | 1 cut(s) | 768 |
| PceI | AGGCCT | 2 cut(s) | 412, 1416 |
| PciI | ACATGT | 1 cut(s) | 1152 |
| PciSI | GCTCTTC | 1 cut(s) | 259 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 263 |
| PctI | GAATGC | 1 cut(s) | 222 |
| PfeI | GAWTC | 5 cut(s) | 320, 521, 540, 907, 1308 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1141 |
| PfoI | TCCNGGA | 1 cut(s) | 188 |
| PinAI | ACCGGT | 1 cut(s) | 1370 |
| PkrI | GCNGC | 2 cut(s) | 502, 1264 |
| PleI | GAGTC | 1 cut(s) | 193 |
| PpsI | GAGTC | 1 cut(s) | 193 |
| PscI | ACATGT | 1 cut(s) | 1152 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1153 |
| PsiI | TTATAA | 1 cut(s) | 1503 |
| Psp124BI | GAGCTC | 1 cut(s) | 254 |
| Psp6I | CCWGG | 1 cut(s) | 830 |
| PspFI | CCCAGC | 2 cut(s) | 527, 919 |
| PspGI | CCWGG | 1 cut(s) | 830 |
| PspN4I | GGNNCC | 1 cut(s) | 570 |
| PspPI | GGNCC | 3 cut(s) | 551, 1368, 1373 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 622, 654 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1311 |
| PvuII | CAGCTG | 1 cut(s) | 503 |
| RsaI | GTAC | 5 cut(s) | 307, 313, 622, 631, 1190 |
| RsaNI | GTAC | 5 cut(s) | 306, 312, 621, 630, 1189 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SacI | GAGCTC | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 259 |
| SaqAI | TTAA | 2 cut(s) | 582, 1516 |
| SatI | GCNGC | 2 cut(s) | 501, 1263 |
| Sau96I | GGNCC | 3 cut(s) | 551, 1368, 1373 |
| ScaI | AGTACT | 2 cut(s) | 307, 313 |
| SchI | GAGTC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 4 cut(s) | 190, 404, 832, 1405 |
| SduI | GDGCHC | 2 cut(s) | 15, 254 |
| SfaNI | GCATC | 1 cut(s) | 463 |
| SfuI | TTCGAA | 1 cut(s) | 257 |
| SinI | GGWCC | 2 cut(s) | 1368, 1373 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 3 cut(s) | 80, 723, 1059 |
| SmoI | CTYRAG | 3 cut(s) | 80, 723, 1059 |
| SpeI | ACTAGT | 2 cut(s) | 308, 632 |
| Sse9I | AATT | 8 cut(s) | 146, 299, 423, 763, 810, 855, 1028, 1504 |
| SseBI | AGGCCT | 2 cut(s) | 412, 1416 |
| SsiI | CCGC | 1 cut(s) | 1049 |
| SspMI | CTAG | 5 cut(s) | 309, 594, 633, 893, 903 |
| SstI | GAGCTC | 1 cut(s) | 254 |
| StuI | AGGCCT | 2 cut(s) | 412, 1416 |
| StyD4I | CCNGG | 4 cut(s) | 188, 402, 830, 1403 |
| TaaI | ACNGT | 2 cut(s) | 808, 944 |
| TaqI | TCGA | 5 cut(s) | 183, 257, 538, 1394, 1419 |
| TasI | AATT | 8 cut(s) | 146, 299, 423, 763, 810, 855, 1028, 1504 |
| TatI | WGTACW | 2 cut(s) | 305, 311 |
| TfiI | GAWTC | 5 cut(s) | 320, 521, 540, 907, 1308 |
| Tru1I | TTAA | 2 cut(s) | 582, 1516 |
| Tru9I | TTAA | 2 cut(s) | 582, 1516 |
| TscAI | CASTG | 5 cut(s) | 46, 301, 331, 949, 1370 |
| TseFI | GTSAC | 3 cut(s) | 206, 396, 1295 |
| TseI | GCWGC | 2 cut(s) | 500, 1262 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 396, 1295 |
| TspDTI | ATGAA | 3 cut(s) | 757, 1040, 1470 |
| TspRI | CASTG | 5 cut(s) | 46, 301, 331, 949, 1370 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1141 |
| VpaK11BI | GGWCC | 2 cut(s) | 1368, 1373 |
| XapI | RAATTY | 1 cut(s) | 299 |
| XceI | RCATGY | 2 cut(s) | 224, 1156 |
| XspI | CTAG | 5 cut(s) | 309, 594, 633, 893, 903 |
| ZrmI | AGTACT | 2 cut(s) | 307, 313 |
| Zsp2I | ATGCAT | 1 cut(s) | 222 |