Rh5DG523800

C2H2-type zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
81206517 .. 81208842
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG523800.1

Sequence Viewer

Length: 1518 bp
ATGGATATAGAGCACCAAGAGATCACTAACCCTGAGATCACTGAGAGCAACAACAATGGAGGAGGACTACTGATCAAGCTCAAGATGGCAAAGGCTGAACCTTTTTCGGAACAAGGTAATCGGAAACCCGAAAACCTTGCTCCTCAATTCACTAAAATCTGTCATATTTGCCACAAAGGTTTCGAGTCCGGGAAAGCTCTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAAGGGACTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGGTGGTGGTGAAAAATAGTGCCACTGAATTCAGTACTAGTACTGCTGATTCCAGTGGTGAACCTGTCTGCATAGAGTGTGGTAAGATTTTCCCGTCAAAGAAATCTCTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGAATTGAGCCTCCTCAATCAACCAAGAACAGCTCCACTTCAACTTTATCTGATGCTTTGCCTCAAAATAATCACAAGGCAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAATCTGGTTCGGGCCTAATCCGAAAGTGGTTCCTGATCTGGTTAAGATTGTGCCTAGCTGGTCTCAAACTGCGAAAAGAGGTACGAAAGGTACTAGTCGTTCTGAAACCAACTCTGAGACTGATGATGATTGTGATGATGAGTTGGATTTGAGTGAAGCTGTCCATGATCTGATGATGTTAGCTCAAGCCAATCCAAAAGGAGCTGAGGAGGCTACCAACAGCAATTTCATGACCAAAAACGAGGATCGTGATGTAAAGGACAGAACGGTAATTGACTATGTGGGTGTAGCCAGGAAGAGGAAGCAGAAGCTTGAAATTGAGGAGGATGGGGATTTTGTAAGTGGGTTTGATCTAGGGAAGTCTAGGAATCACTTGGAGCTGGGAGTGGATTTGAAAGAGGACAGTGAGGAGGAGTTATCGGATAGTGAAAACTCCGAGAGCATTGTGCTTGCAAACATGATGAGGAGGAAGAAGAGAAGGAAGATGAAATTGGAAGACTTGGAAGGAGCGGTTGTTGCTCAAGATCATCAACATCAAAGCCATCATCACAAAGTTTATCCTTGCAGTCTTTGCAACAAGTCATTCCAAAGCCACCAAGCATTGGGAGGACACATGTCAAGCCACAACAAGTTCAAGAACAACATCCAGTACCCTGTGGAACATGATCATCATCAATCTGGTTCTGACGATACTAATAATGGAAATGCTGATCTCACCAACGCAGCCACCCAAGTTGACCATGATCAAGCTGAAAGTCACCAATGCAGAATCTGTAACAGGACTTTTCCAACAGGTCAAGCATTGGGAGGTCATATGAGGTCTCACTGGACCGGTCCAAATGATCCAGCTCAATCGAGCCAGACCGGGCGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCACCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGCTGGTTATGCAACTTCTTCTTATAATTCAGTTACTTAA

Protein Analysis

505

Amino Acids

55.81

Weight (kDa)

5.92

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 53 - 74 2.5e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 365 - 389 7.9e-10 C2H2-type zinc finger
zf-C2H2_6 PF13912 433 - 456 4.2e-10 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015587)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1503
AccB7I CCANNNNNTGG 1 cut(s) 1141
AccBSI CCGCTC 1 cut(s) 1049
AciI CCGC 1 cut(s) 1049
AclWI GGATC 3 cut(s) 516, 792, 1376
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 5 cut(s) 307, 313, 622, 631, 1190
AfiI CCNNNNNNNGG 3 cut(s) 419, 837, 1141
AflIII ACRYGT 1 cut(s) 1152
AgeI ACCGGT 1 cut(s) 1370
AgsI TTSAA 4 cut(s) 462, 854, 934, 1174
AhlI ACTAGT 2 cut(s) 308, 632
AjnI CCWGG 1 cut(s) 830
AjuI GAANNNNNNNTTGG 4 cut(s) 749, 781, 1013, 1045
Alw21I GWGCWC 2 cut(s) 15, 254
Alw26I GTCTC 3 cut(s) 606, 650, 1365
AlwI GGATC 3 cut(s) 516, 792, 1376
AlwNI CAGNNNCTG 1 cut(s) 1311
AoxI GGCC 3 cut(s) 410, 551, 1414
ApeKI GCWGC 2 cut(s) 500, 1262
ApoI RAATTY 1 cut(s) 299
AsiGI ACCGGT 1 cut(s) 1370
AspLEI GCGC 1 cut(s) 1410
AspS9I GGNCC 3 cut(s) 551, 1368, 1373
AsuC2I CCSGG 3 cut(s) 190, 404, 1405
AsuHPI GGTGA 4 cut(s) 292, 341, 1246, 1289
AsuII TTCGAA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 1368, 1373
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 1041
Bbv12I GWGCWC 2 cut(s) 15, 254
BbvCI CCTCAGC 2 cut(s) 504, 744
BbvI GCAGC 2 cut(s) 512, 1274
BccI CCATC 3 cut(s) 79, 860, 1089
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 1399, 1433
BciT130I CCWGG 1 cut(s) 832
BclI TGATCA 4 cut(s) 72, 243, 1204, 1282
BcnI CCSGG 3 cut(s) 190, 404, 1405
BcoDI GTCTC 3 cut(s) 606, 650, 1365
BcuI ACTAGT 2 cut(s) 308, 632
BfaI CTAG 5 cut(s) 309, 594, 633, 893, 903
BisI GCNGC 2 cut(s) 501, 1263
BlsI GCNGC 2 cut(s) 502, 1264
BmcAI AGTACT 2 cut(s) 307, 313
Bme1390I CCNGG 4 cut(s) 190, 404, 832, 1405
Bme18I GGWCC 2 cut(s) 1368, 1373
BmgT120I GGNCC 3 cut(s) 551, 1368, 1373
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 4 cut(s) 190, 404, 832, 1405
BmsI GCATC 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 1153
BpiI GAAGAC 1 cut(s) 1041
BpmI CTGGAG 1 cut(s) 1497
Bpu10I CCTNAGC 2 cut(s) 504, 744
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 3 cut(s) 65, 708, 1044
BpuMI CCSGG 3 cut(s) 190, 404, 1405
BsaBI GATNNNNATC 1 cut(s) 1209
BsaI GGTCTC 2 cut(s) 606, 1365
BsaWI WCCGGW 1 cut(s) 1370
BsaXI ACNNNNNCTCC 2 cut(s) 1038, 1068
Bsc4I CCNNNNNNNGG 3 cut(s) 419, 837, 1141
Bse118I RCCGGY 2 cut(s) 271, 1370
Bse1I ACTGG 3 cut(s) 324, 1186, 1370
Bse8I GATNNNNATC 1 cut(s) 1209
BseBI CCWGG 1 cut(s) 832
BseGI GGATG 2 cut(s) 871, 1182
BseJI GATNNNNATC 1 cut(s) 1209
BseLI CCNNNNNNNGG 3 cut(s) 419, 837, 1141
BseMII CTCAG 5 cut(s) 24, 33, 495, 645, 735
BseNI ACTGG 3 cut(s) 324, 1186, 1370
BseRI GAGGAG 8 cut(s) 75, 132, 423, 761, 875, 962, 965, 1018
BseXI GCAGC 2 cut(s) 512, 1274
BseYI CCCAGC 2 cut(s) 527, 919
BshFI GGCC 3 cut(s) 412, 553, 1416
BshTI ACCGGT 1 cut(s) 1370
BsiHKAI GWGCWC 2 cut(s) 15, 254
BsiSI CCGG 5 cut(s) 189, 272, 404, 1371, 1404
BslFI GGGAC 2 cut(s) 252, 544
BslI CCNNNNNNNGG 3 cut(s) 419, 837, 1141
BsmAI GTCTC 3 cut(s) 606, 650, 1365
BsmFI GGGAC 2 cut(s) 252, 544
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 412, 553, 1416
Bso31I GGTCTC 2 cut(s) 606, 1365
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 15, 254
BspACI CCGC 1 cut(s) 1049
BspANI GGCC 3 cut(s) 412, 553, 1416
BspCNI CTCAG 5 cut(s) 25, 34, 496, 646, 736
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 3 cut(s) 516, 792, 1376
BspQI GCTCTTC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 257
BspTNI GGTCTC 2 cut(s) 606, 1365
BsrBI CCGCTC 1 cut(s) 1049
BsrFI RCCGGY 2 cut(s) 271, 1370
BsrI ACTGG 3 cut(s) 324, 1186, 1370
BssAI RCCGGY 2 cut(s) 271, 1370
Bst2UI CCWGG 1 cut(s) 832
Bst4CI ACNGT 2 cut(s) 808, 944
Bst6I CTCTTC 3 cut(s) 259, 830, 1007
BstAPI GCANNNNNTGC 1 cut(s) 1110
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 990
BstDEI CTNAG 5 cut(s) 33, 42, 504, 654, 744
BstF5I GGATG 2 cut(s) 871, 1182
BstHHI GCGC 1 cut(s) 1410
BstMAI GTCTC 3 cut(s) 606, 650, 1365
BstMWI GCNNNNNNNGC 5 cut(s) 533, 749, 1055, 1110, 1487
BstNI CCWGG 1 cut(s) 832
BstNSI RCATGY 2 cut(s) 224, 1156
BstPAI GACNNNNGTC 1 cut(s) 1153
BstSCI CCNGG 4 cut(s) 188, 402, 830, 1403
BstV1I GCAGC 2 cut(s) 512, 1274
BstV2I GAAGAC 1 cut(s) 1041
BsuRI GGCC 3 cut(s) 412, 553, 1416
BtsCI GGATG 2 cut(s) 871, 1182
BtsIMutI CAGTG 5 cut(s) 39, 294, 331, 949, 1363
Cac8I GCNNGC 1 cut(s) 990
CaiI CAGNNNCTG 1 cut(s) 1311
CciI TCATGA 1 cut(s) 768
CfoI GCGC 1 cut(s) 1410
Cfr10I RCCGGY 2 cut(s) 271, 1370
Cfr13I GGNCC 3 cut(s) 551, 1368, 1373
Csp6I GTAC 5 cut(s) 306, 312, 621, 630, 1189
CspAI ACCGGT 1 cut(s) 1370
CspCI CAANNNNNGTGG 2 cut(s) 1255, 1290
CviAII CATG 9 cut(s) 211, 221, 391, 704, 769, 997, 1153, 1202, 1280
CviQI GTAC 5 cut(s) 306, 312, 621, 630, 1189
DdeI CTNAG 5 cut(s) 33, 42, 504, 654, 744
Eam1104I CTCTTC 3 cut(s) 259, 830, 1007
EarI CTCTTC 3 cut(s) 259, 830, 1007
Ecl136II GAGCTC 1 cut(s) 252
Eco147I AGGCCT 2 cut(s) 412, 1416
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 2 cut(s) 606, 1365
Eco47I GGWCC 2 cut(s) 1368, 1373
Eco53kI GAGCTC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 1 cut(s) 830
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 254
FaeI CATG 9 cut(s) 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283
FaqI GGGAC 2 cut(s) 252, 544
FatI CATG 9 cut(s) 210, 220, 390, 703, 768, 996, 1152, 1201, 1279
FauNDI CATATG 1 cut(s) 1353
FbaI TGATCA 4 cut(s) 72, 243, 1204, 1282
Fnu4HI GCNGC 2 cut(s) 501, 1263
FokI GGATG 2 cut(s) 878, 1169
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 2 cut(s) 501, 1263
FspBI CTAG 5 cut(s) 309, 594, 633, 893, 903
GlaI GCGC 1 cut(s) 1409
GluI GCNGC 2 cut(s) 501, 1263
GsaI CCCAGC 2 cut(s) 531, 923
GsuI CTGGAG 1 cut(s) 1497
HaeIII GGCC 3 cut(s) 412, 553, 1416
HapII CCGG 5 cut(s) 189, 272, 404, 1371, 1404
HhaI GCGC 1 cut(s) 1410
Hin1II CATG 9 cut(s) 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283
Hin6I GCGC 1 cut(s) 1408
HinP1I GCGC 1 cut(s) 1408
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 6 cut(s) 185, 320, 521, 540, 907, 1308
HpaII CCGG 5 cut(s) 189, 272, 404, 1371, 1404
HphI GGTGA 4 cut(s) 292, 341, 1246, 1289
Hpy166II GTNNAC 2 cut(s) 332, 1276
Hpy188III TCNNGA 8 cut(s) 82, 247, 572, 769, 788, 1061, 1174, 1476
Hpy8I GTNNAC 2 cut(s) 332, 1276
HpyAV CCTTC 2 cut(s) 1011, 1037
HpyCH4III ACNGT 2 cut(s) 808, 944
HpyCH4V TGCA 7 cut(s) 220, 342, 992, 1104, 1113, 1305, 1490
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 749, 1055, 1110, 1487
HpyF3I CTNAG 5 cut(s) 33, 42, 504, 654, 744
Hsp92II CATG 9 cut(s) 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283
HspAI GCGC 1 cut(s) 1408
Ksp22I TGATCA 4 cut(s) 72, 243, 1204, 1282
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 6 cut(s) 145, 458, 740, 916, 1046, 1478
Lsp1109I GCAGC 2 cut(s) 512, 1274
LweI GCATC 1 cut(s) 463
MaeI CTAG 5 cut(s) 309, 594, 633, 893, 903
MaeIII GTNAC 5 cut(s) 206, 396, 1295, 1313, 1510
MbiI CCGCTC 1 cut(s) 1049
MboII GAAGA 7 cut(s) 246, 847, 1021, 1024, 1033, 1046, 1488
MhlI GDGCHC 2 cut(s) 15, 254
MluCI AATT 8 cut(s) 146, 299, 423, 763, 810, 855, 1028, 1504
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 663, 1352
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 2 cut(s) 582, 1516
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 5 cut(s) 189, 272, 404, 1371, 1404
MspR9I CCNGG 4 cut(s) 190, 404, 832, 1405
Mva1269I GAATGC 1 cut(s) 222
MvaI CCWGG 1 cut(s) 832
MwoI GCNNNNNNNGC 5 cut(s) 533, 749, 1055, 1110, 1487
NciI CCSGG 3 cut(s) 190, 404, 1405
NdeI CATATG 1 cut(s) 1353
NlaIII CATG 9 cut(s) 214, 224, 394, 707, 772, 1000, 1156, 1205, 1283
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 3 cut(s) 206, 396, 1295
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 2 cut(s) 224, 1156
NspV TTCGAA 1 cut(s) 257
PagI TCATGA 1 cut(s) 768
PceI AGGCCT 2 cut(s) 412, 1416
PciI ACATGT 1 cut(s) 1152
PciSI GCTCTTC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 5 cut(s) 320, 521, 540, 907, 1308
PflMI CCANNNNNTGG 1 cut(s) 1141
PfoI TCCNGGA 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 1370
PkrI GCNGC 2 cut(s) 502, 1264
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 1152
PshAI GACNNNNGTC 1 cut(s) 1153
PsiI TTATAA 1 cut(s) 1503
Psp124BI GAGCTC 1 cut(s) 254
Psp6I CCWGG 1 cut(s) 830
PspFI CCCAGC 2 cut(s) 527, 919
PspGI CCWGG 1 cut(s) 830
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 551, 1368, 1373
PsrI GAACNNNNNNTAC 2 cut(s) 622, 654
PstNI CAGNNNCTG 1 cut(s) 1311
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 5 cut(s) 307, 313, 622, 631, 1190
RsaNI GTAC 5 cut(s) 306, 312, 621, 630, 1189
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 582, 1516
SatI GCNGC 2 cut(s) 501, 1263
Sau96I GGNCC 3 cut(s) 551, 1368, 1373
ScaI AGTACT 2 cut(s) 307, 313
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 4 cut(s) 190, 404, 832, 1405
SduI GDGCHC 2 cut(s) 15, 254
SfaNI GCATC 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 2 cut(s) 1368, 1373
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 3 cut(s) 80, 723, 1059
SmoI CTYRAG 3 cut(s) 80, 723, 1059
SpeI ACTAGT 2 cut(s) 308, 632
Sse9I AATT 8 cut(s) 146, 299, 423, 763, 810, 855, 1028, 1504
SseBI AGGCCT 2 cut(s) 412, 1416
SsiI CCGC 1 cut(s) 1049
SspMI CTAG 5 cut(s) 309, 594, 633, 893, 903
SstI GAGCTC 1 cut(s) 254
StuI AGGCCT 2 cut(s) 412, 1416
StyD4I CCNGG 4 cut(s) 188, 402, 830, 1403
TaaI ACNGT 2 cut(s) 808, 944
TaqI TCGA 5 cut(s) 183, 257, 538, 1394, 1419
TasI AATT 8 cut(s) 146, 299, 423, 763, 810, 855, 1028, 1504
TatI WGTACW 2 cut(s) 305, 311
TfiI GAWTC 5 cut(s) 320, 521, 540, 907, 1308
Tru1I TTAA 2 cut(s) 582, 1516
Tru9I TTAA 2 cut(s) 582, 1516
TscAI CASTG 5 cut(s) 46, 301, 331, 949, 1370
TseFI GTSAC 3 cut(s) 206, 396, 1295
TseI GCWGC 2 cut(s) 500, 1262
Tsp45I GTSAC 3 cut(s) 206, 396, 1295
TspDTI ATGAA 3 cut(s) 757, 1040, 1470
TspRI CASTG 5 cut(s) 46, 301, 331, 949, 1370
Van91I CCANNNNNTGG 1 cut(s) 1141
VpaK11BI GGWCC 2 cut(s) 1368, 1373
XapI RAATTY 1 cut(s) 299
XceI RCATGY 2 cut(s) 224, 1156
XspI CTAG 5 cut(s) 309, 594, 633, 893, 903
ZrmI AGTACT 2 cut(s) 307, 313
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.