Rh5AG490400

C2H2-type zinc finger

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
83573278 .. 83575622
2345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG490400.1

Sequence Viewer

Length: 1536 bp
ATGGATATGGAGCACCAAGAGATCACTAACCCTGAGATCACTGAGAGCAACAACAATGGAGGAGGACTACTGATCAAGCTCAAGATGGCAAAGGCTGAACCTTTTTCGGAACAAGGTAATCGGAAGCCCGAAAACCTTGCTCCTCAATTCACTAAAATCTGTCATATTTGCCACAAAGGTTTCGAGTCCGGGAAAGCTCTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAAGGGACTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGGTGGTCGTGAAAAATAGTGCCACTGAATTCAGTACTAGTACGACTGATTCCAGTGGTGAACCTGTCTGCATAGAGTGTGGTAAGATTTTCCCGTCAAAGAAATCTCTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGAATTGAGCCTCCTCAATCAACCAAGAACAGCTCCACTTCAACTTTATCTGATGCTTTGCCTCAAAATAATCACAAGGCAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAATCTGGTTCGGGCCTAATCCGAAAGTGGTTCCTGATCTGGTTAAGATTGTGCCTAGCTGGTCTCAAACTGCGAAAAGAGGTACGAAAGGTACTAGTCTTTCTGAAACCAACTCTGAGACTGATGATGATTGTGATGATGATGATGATGATGATGATGAGTTGGATTTGAGTGAAGCTGTCCATGATCTGATGATGTTAGCTCAAGCCAATCCAAAAGGAGCTGAGGAGGCTACCAACAGCAATTTCATGACCAAAAACGAGGATCGTGATGGAAAGGACAGAACGGTAATTGACTATGTGGGTGTAGCCAAGAAGAGGAAGCAGAAGCTTGAAATTGAGGAGGATGGGGATTTTGTAAGTGGGTTTGATCTAGGGAAGTCTAGGAATCACTTGGAGCTGGGAGTGGATTTGAAAGAGGACAGTGAAGAGGAGTTATCGGATAGTGAAAACTCTGAGAGCATTGTGCTTGCAAACATGATGAGGAGGAAGAAGAGAAGGAAGATGAAATTGGAAGACTTGGAAGGAGCGGTTGTTGCTCAAGATCATCAACATCAAAGCCATCATCACAAAGTTTATCCTTGCAGTCTTTGCAGCAAGTCATTCCAAAGCCACCAAGCATTGGGAGGACACATGTCAAGCCACAACAAGTTCAAGAACAACATCCAGTACCCTGTGGAACATGATCATCATCAATCTGGTTCTGACGATACTAATAATGGAAATGCTAATCTCACCAACGCAGCCACCCAAGTTGACCATGATCAGGCTGAAAGTCACCAATGCAGATTCTGTAACAGGACTTTTCCAACAGGTCAAGCATTGGGAGGTCATATGAGGTCTCACTGGACCGGTCCAAATGATCCAGCTCAATCGAGCCAGACCGGGCGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCACCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGCTGGTTATGCAACTTCTTCTTATAATTCAGTTACTTAA

Protein Analysis

511

Amino Acids

56.44

Weight (kDa)

5.61

Isoelectric Point (pI)

49.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 53 - 74 2.6e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 371 - 395 1.6e-09 C2H2-type zinc finger
zf-C2H2_6 PF13912 439 - 462 5.8e-09 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015587)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1521
AccB7I CCANNNNNTGG 1 cut(s) 1159
AccBSI CCGCTC 1 cut(s) 1067
AciI CCGC 1 cut(s) 1067
AclWI GGATC 3 cut(s) 516, 810, 1394
AcsI RAATTY 1 cut(s) 299
AfaI GTAC 5 cut(s) 307, 313, 622, 631, 1208
AfiI CCNNNNNNNGG 4 cut(s) 419, 855, 1159, 1303
AflIII ACRYGT 1 cut(s) 1170
AgeI ACCGGT 1 cut(s) 1388
AgsI TTSAA 4 cut(s) 462, 872, 952, 1192
AhlI ACTAGT 2 cut(s) 308, 632
AjuI GAANNNNNNNTTGG 4 cut(s) 767, 799, 1031, 1063
Alw21I GWGCWC 2 cut(s) 15, 254
Alw26I GTCTC 3 cut(s) 606, 650, 1383
AlwI GGATC 3 cut(s) 516, 810, 1394
AlwNI CAGNNNCTG 1 cut(s) 1329
AoxI GGCC 3 cut(s) 410, 551, 1432
ApeKI GCWGC 3 cut(s) 500, 1131, 1280
ApoI RAATTY 1 cut(s) 299
AsiGI ACCGGT 1 cut(s) 1388
AspLEI GCGC 1 cut(s) 1428
AspS9I GGNCC 3 cut(s) 551, 1386, 1391
AsuC2I CCSGG 3 cut(s) 190, 404, 1423
AsuHPI GGTGA 3 cut(s) 341, 1264, 1307
AsuII TTCGAA 1 cut(s) 257
AvaII GGWCC 2 cut(s) 1386, 1391
BanII GRGCYC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 1059
Bbv12I GWGCWC 2 cut(s) 15, 254
BbvCI CCTCAGC 2 cut(s) 504, 762
BbvI GCAGC 3 cut(s) 512, 1143, 1292
BccI CCATC 4 cut(s) 79, 803, 878, 1107
BcgI CGANNNNNNTGC 4 cut(s) 119, 153, 1417, 1451
BclI TGATCA 4 cut(s) 72, 243, 1222, 1300
BcnI CCSGG 3 cut(s) 190, 404, 1423
BcoDI GTCTC 3 cut(s) 606, 650, 1383
BcuI ACTAGT 2 cut(s) 308, 632
BfaI CTAG 5 cut(s) 309, 594, 633, 911, 921
BisI GCNGC 3 cut(s) 501, 1132, 1281
BlsI GCNGC 3 cut(s) 502, 1133, 1282
BmcAI AGTACT 1 cut(s) 307
Bme1390I CCNGG 3 cut(s) 190, 404, 1423
Bme18I GGWCC 2 cut(s) 1386, 1391
BmgT120I GGNCC 3 cut(s) 551, 1386, 1391
BmiI GGNNCC 1 cut(s) 570
BmrFI CCNGG 3 cut(s) 190, 404, 1423
BmsI GCATC 1 cut(s) 463
BoxI GACNNNNGTC 1 cut(s) 1171
BpiI GAAGAC 1 cut(s) 1059
BpmI CTGGAG 1 cut(s) 1515
Bpu10I CCTNAGC 2 cut(s) 504, 762
Bpu14I TTCGAA 1 cut(s) 257
BpuEI CTTGAG 3 cut(s) 65, 726, 1062
BpuMI CCSGG 3 cut(s) 190, 404, 1423
BsaBI GATNNNNATC 1 cut(s) 1227
BsaI GGTCTC 2 cut(s) 606, 1383
BsaWI WCCGGW 1 cut(s) 1388
BsaXI ACNNNNNCTCC 2 cut(s) 1056, 1086
Bsc4I CCNNNNNNNGG 4 cut(s) 419, 855, 1159, 1303
Bse118I RCCGGY 2 cut(s) 271, 1388
Bse1I ACTGG 3 cut(s) 324, 1204, 1388
Bse8I GATNNNNATC 1 cut(s) 1227
BseGI GGATG 2 cut(s) 889, 1200
BseJI GATNNNNATC 1 cut(s) 1227
BseLI CCNNNNNNNGG 4 cut(s) 419, 855, 1159, 1303
BseMII CTCAG 6 cut(s) 24, 33, 495, 645, 753, 984
BseNI ACTGG 3 cut(s) 324, 1204, 1388
BseRI GAGGAG 7 cut(s) 75, 132, 423, 779, 893, 983, 1036
BseXI GCAGC 3 cut(s) 512, 1143, 1292
BseYI CCCAGC 2 cut(s) 527, 937
BshFI GGCC 3 cut(s) 412, 553, 1434
BshTI ACCGGT 1 cut(s) 1388
BsiHKAI GWGCWC 2 cut(s) 15, 254
BsiSI CCGG 5 cut(s) 189, 272, 404, 1389, 1422
BslFI GGGAC 2 cut(s) 252, 544
BslI CCNNNNNNNGG 4 cut(s) 419, 855, 1159, 1303
BsmAI GTCTC 3 cut(s) 606, 650, 1383
BsmFI GGGAC 2 cut(s) 252, 544
BsmI GAATGC 1 cut(s) 222
BsnI GGCC 3 cut(s) 412, 553, 1434
Bso31I GGTCTC 2 cut(s) 606, 1383
Bsp119I TTCGAA 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 15, 254
BspACI CCGC 1 cut(s) 1067
BspANI GGCC 3 cut(s) 412, 553, 1434
BspCNI CTCAG 6 cut(s) 25, 34, 496, 646, 754, 985
BspHI TCATGA 1 cut(s) 786
BspLI GGNNCC 1 cut(s) 570
BspPI GGATC 3 cut(s) 516, 810, 1394
BspQI GCTCTTC 1 cut(s) 259
BspT104I TTCGAA 1 cut(s) 257
BspTNI GGTCTC 2 cut(s) 606, 1383
BsrBI CCGCTC 1 cut(s) 1067
BsrFI RCCGGY 2 cut(s) 271, 1388
BsrI ACTGG 3 cut(s) 324, 1204, 1388
BssAI RCCGGY 2 cut(s) 271, 1388
Bst4CI ACNGT 2 cut(s) 826, 962
Bst6I CTCTTC 4 cut(s) 259, 848, 960, 1025
BstAPI GCANNNNNTGC 1 cut(s) 1128
BstBI TTCGAA 1 cut(s) 257
BstC8I GCNNGC 1 cut(s) 1008
BstDEI CTNAG 6 cut(s) 33, 42, 504, 654, 762, 993
BstF5I GGATG 2 cut(s) 889, 1200
BstHHI GCGC 1 cut(s) 1428
BstMAI GTCTC 3 cut(s) 606, 650, 1383
BstMWI GCNNNNNNNGC 5 cut(s) 533, 767, 1073, 1128, 1505
BstNSI RCATGY 2 cut(s) 224, 1174
BstPAI GACNNNNGTC 1 cut(s) 1171
BstSCI CCNGG 3 cut(s) 188, 402, 1421
BstV1I GCAGC 3 cut(s) 512, 1143, 1292
BstV2I GAAGAC 1 cut(s) 1059
BsuRI GGCC 3 cut(s) 412, 553, 1434
BtsCI GGATG 2 cut(s) 889, 1200
BtsIMutI CAGTG 5 cut(s) 39, 294, 331, 967, 1381
Cac8I GCNNGC 1 cut(s) 1008
CaiI CAGNNNCTG 1 cut(s) 1329
CciI TCATGA 1 cut(s) 786
CfoI GCGC 1 cut(s) 1428
Cfr10I RCCGGY 2 cut(s) 271, 1388
Cfr13I GGNCC 3 cut(s) 551, 1386, 1391
Csp6I GTAC 5 cut(s) 306, 312, 621, 630, 1207
CspAI ACCGGT 1 cut(s) 1388
CspCI CAANNNNNGTGG 2 cut(s) 1273, 1308
CviAII CATG 9 cut(s) 211, 221, 391, 722, 787, 1015, 1171, 1220, 1298
CviQI GTAC 5 cut(s) 306, 312, 621, 630, 1207
DdeI CTNAG 6 cut(s) 33, 42, 504, 654, 762, 993
Eam1104I CTCTTC 4 cut(s) 259, 848, 960, 1025
EarI CTCTTC 4 cut(s) 259, 848, 960, 1025
Ecl136II GAGCTC 1 cut(s) 252
Eco147I AGGCCT 2 cut(s) 412, 1434
Eco24I GRGCYC 1 cut(s) 254
Eco31I GGTCTC 2 cut(s) 606, 1383
Eco47I GGWCC 2 cut(s) 1386, 1391
Eco53kI GAGCTC 1 cut(s) 252
EcoICRI GAGCTC 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 299
EcoT22I ATGCAT 1 cut(s) 222
EcoT38I GRGCYC 1 cut(s) 254
FaeI CATG 9 cut(s) 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301
FaqI GGGAC 2 cut(s) 252, 544
FatI CATG 9 cut(s) 210, 220, 390, 721, 786, 1014, 1170, 1219, 1297
FauNDI CATATG 1 cut(s) 1371
FbaI TGATCA 4 cut(s) 72, 243, 1222, 1300
Fnu4HI GCNGC 3 cut(s) 501, 1132, 1281
FokI GGATG 2 cut(s) 896, 1187
FriOI GRGCYC 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 501, 1132, 1281
FspBI CTAG 5 cut(s) 309, 594, 633, 911, 921
GlaI GCGC 1 cut(s) 1427
GluI GCNGC 3 cut(s) 501, 1132, 1281
GsaI CCCAGC 2 cut(s) 531, 941
GsuI CTGGAG 1 cut(s) 1515
HaeIII GGCC 3 cut(s) 412, 553, 1434
HapII CCGG 5 cut(s) 189, 272, 404, 1389, 1422
HhaI GCGC 1 cut(s) 1428
Hin1II CATG 9 cut(s) 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301
Hin6I GCGC 1 cut(s) 1426
HinP1I GCGC 1 cut(s) 1426
HincII GTYRAC 1 cut(s) 1294
HindII GTYRAC 1 cut(s) 1294
HindIII AAGCTT 1 cut(s) 866
HinfI GANTC 6 cut(s) 185, 320, 521, 540, 925, 1326
HpaII CCGG 5 cut(s) 189, 272, 404, 1389, 1422
HphI GGTGA 3 cut(s) 341, 1264, 1307
Hpy166II GTNNAC 2 cut(s) 332, 1294
Hpy188III TCNNGA 9 cut(s) 82, 247, 280, 572, 787, 806, 1079, 1192, 1494
Hpy8I GTNNAC 2 cut(s) 332, 1294
HpyAV CCTTC 2 cut(s) 1029, 1055
HpyCH4III ACNGT 2 cut(s) 826, 962
HpyCH4V TGCA 7 cut(s) 220, 342, 1010, 1122, 1131, 1323, 1508
HpyF10VI GCNNNNNNNGC 5 cut(s) 533, 767, 1073, 1128, 1505
HpyF3I CTNAG 6 cut(s) 33, 42, 504, 654, 762, 993
Hsp92II CATG 9 cut(s) 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301
HspAI GCGC 1 cut(s) 1426
Ksp22I TGATCA 4 cut(s) 72, 243, 1222, 1300
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 7 cut(s) 10, 145, 458, 758, 934, 1064, 1496
Lsp1109I GCAGC 3 cut(s) 512, 1143, 1292
LweI GCATC 1 cut(s) 463
MaeI CTAG 5 cut(s) 309, 594, 633, 911, 921
MaeIII GTNAC 5 cut(s) 206, 396, 1313, 1331, 1528
MbiI CCGCTC 1 cut(s) 1067
MboII GAAGA 8 cut(s) 246, 865, 977, 1039, 1042, 1051, 1064, 1506
MhlI GDGCHC 2 cut(s) 15, 254
MluCI AATT 8 cut(s) 146, 299, 423, 781, 828, 873, 1046, 1522
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 2 cut(s) 681, 1370
Mph1103I ATGCAT 1 cut(s) 222
MseI TTAA 2 cut(s) 582, 1534
MslI CAYNNNNRTG 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 503
MspI CCGG 5 cut(s) 189, 272, 404, 1389, 1422
MspR9I CCNGG 3 cut(s) 190, 404, 1423
Mva1269I GAATGC 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 533, 767, 1073, 1128, 1505
NciI CCSGG 3 cut(s) 190, 404, 1423
NdeI CATATG 1 cut(s) 1371
NlaIII CATG 9 cut(s) 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301
NlaIV GGNNCC 1 cut(s) 570
NmuCI GTSAC 3 cut(s) 206, 396, 1313
NsiI ATGCAT 1 cut(s) 222
NspI RCATGY 2 cut(s) 224, 1174
NspV TTCGAA 1 cut(s) 257
PagI TCATGA 1 cut(s) 786
PceI AGGCCT 2 cut(s) 412, 1434
PciI ACATGT 1 cut(s) 1170
PciSI GCTCTTC 1 cut(s) 259
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 222
PfeI GAWTC 5 cut(s) 320, 521, 540, 925, 1326
PflMI CCANNNNNTGG 1 cut(s) 1159
PfoI TCCNGGA 1 cut(s) 188
PinAI ACCGGT 1 cut(s) 1388
PkrI GCNGC 3 cut(s) 502, 1133, 1282
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PscI ACATGT 1 cut(s) 1170
PshAI GACNNNNGTC 1 cut(s) 1171
PsiI TTATAA 1 cut(s) 1521
Psp124BI GAGCTC 1 cut(s) 254
PspFI CCCAGC 2 cut(s) 527, 937
PspN4I GGNNCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 551, 1386, 1391
PstNI CAGNNNCTG 1 cut(s) 1329
PvuII CAGCTG 1 cut(s) 503
RsaI GTAC 5 cut(s) 307, 313, 622, 631, 1208
RsaNI GTAC 5 cut(s) 306, 312, 621, 630, 1207
RseI CAYNNNNRTG 1 cut(s) 215
SacI GAGCTC 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 582, 1534
SatI GCNGC 3 cut(s) 501, 1132, 1281
Sau96I GGNCC 3 cut(s) 551, 1386, 1391
ScaI AGTACT 1 cut(s) 307
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 3 cut(s) 190, 404, 1423
SduI GDGCHC 2 cut(s) 15, 254
SfaNI GCATC 1 cut(s) 463
SfuI TTCGAA 1 cut(s) 257
SinI GGWCC 2 cut(s) 1386, 1391
SmiMI CAYNNNNRTG 1 cut(s) 215
SmlI CTYRAG 3 cut(s) 80, 741, 1077
SmoI CTYRAG 3 cut(s) 80, 741, 1077
SpeI ACTAGT 2 cut(s) 308, 632
Sse9I AATT 8 cut(s) 146, 299, 423, 781, 828, 873, 1046, 1522
SseBI AGGCCT 2 cut(s) 412, 1434
SsiI CCGC 1 cut(s) 1067
SspMI CTAG 5 cut(s) 309, 594, 633, 911, 921
SstI GAGCTC 1 cut(s) 254
StuI AGGCCT 2 cut(s) 412, 1434
StyD4I CCNGG 3 cut(s) 188, 402, 1421
TaaI ACNGT 2 cut(s) 826, 962
TaqI TCGA 5 cut(s) 183, 257, 538, 1412, 1437
TasI AATT 8 cut(s) 146, 299, 423, 781, 828, 873, 1046, 1522
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 5 cut(s) 320, 521, 540, 925, 1326
Tru1I TTAA 2 cut(s) 582, 1534
Tru9I TTAA 2 cut(s) 582, 1534
TscAI CASTG 5 cut(s) 46, 301, 331, 967, 1388
TseFI GTSAC 3 cut(s) 206, 396, 1313
TseI GCWGC 3 cut(s) 500, 1131, 1280
Tsp45I GTSAC 3 cut(s) 206, 396, 1313
TspDTI ATGAA 3 cut(s) 775, 1058, 1488
TspRI CASTG 5 cut(s) 46, 301, 331, 967, 1388
Van91I CCANNNNNTGG 1 cut(s) 1159
VpaK11BI GGWCC 2 cut(s) 1386, 1391
XapI RAATTY 1 cut(s) 299
XceI RCATGY 2 cut(s) 224, 1174
XspI CTAG 5 cut(s) 309, 594, 633, 911, 921
ZrmI AGTACT 1 cut(s) 307
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.