C2H2-type zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_3g41600 |
| malus_domestica | MD03G1043000.v1.1 MD11G1046000.v1.1 |
| prunus_persica | Prupe.6G035400_v2.0.a1 |
| pyrus_communis | pycom03g03320 pycom11g03730 |
| rosa_chinensis | RchiOBHm_Chr5g0074621 |
| rosa_laevigata | RLG00000036491 |
| rosa_multiflora | Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00006960 |
| rosa_rugosa | Rorug05G0433300 |
| rosa_samantha | Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1521 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1159 |
| AccBSI | CCGCTC | 1 cut(s) | 1067 |
| AciI | CCGC | 1 cut(s) | 1067 |
| AclWI | GGATC | 3 cut(s) | 516, 810, 1394 |
| AcsI | RAATTY | 1 cut(s) | 299 |
| AfaI | GTAC | 5 cut(s) | 307, 313, 622, 631, 1208 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 419, 855, 1159, 1303 |
| AflIII | ACRYGT | 1 cut(s) | 1170 |
| AgeI | ACCGGT | 1 cut(s) | 1388 |
| AgsI | TTSAA | 4 cut(s) | 462, 872, 952, 1192 |
| AhlI | ACTAGT | 2 cut(s) | 308, 632 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 767, 799, 1031, 1063 |
| Alw21I | GWGCWC | 2 cut(s) | 15, 254 |
| Alw26I | GTCTC | 3 cut(s) | 606, 650, 1383 |
| AlwI | GGATC | 3 cut(s) | 516, 810, 1394 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1329 |
| AoxI | GGCC | 3 cut(s) | 410, 551, 1432 |
| ApeKI | GCWGC | 3 cut(s) | 500, 1131, 1280 |
| ApoI | RAATTY | 1 cut(s) | 299 |
| AsiGI | ACCGGT | 1 cut(s) | 1388 |
| AspLEI | GCGC | 1 cut(s) | 1428 |
| AspS9I | GGNCC | 3 cut(s) | 551, 1386, 1391 |
| AsuC2I | CCSGG | 3 cut(s) | 190, 404, 1423 |
| AsuHPI | GGTGA | 3 cut(s) | 341, 1264, 1307 |
| AsuII | TTCGAA | 1 cut(s) | 257 |
| AvaII | GGWCC | 2 cut(s) | 1386, 1391 |
| BanII | GRGCYC | 1 cut(s) | 254 |
| BbsI | GAAGAC | 1 cut(s) | 1059 |
| Bbv12I | GWGCWC | 2 cut(s) | 15, 254 |
| BbvCI | CCTCAGC | 2 cut(s) | 504, 762 |
| BbvI | GCAGC | 3 cut(s) | 512, 1143, 1292 |
| BccI | CCATC | 4 cut(s) | 79, 803, 878, 1107 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 119, 153, 1417, 1451 |
| BclI | TGATCA | 4 cut(s) | 72, 243, 1222, 1300 |
| BcnI | CCSGG | 3 cut(s) | 190, 404, 1423 |
| BcoDI | GTCTC | 3 cut(s) | 606, 650, 1383 |
| BcuI | ACTAGT | 2 cut(s) | 308, 632 |
| BfaI | CTAG | 5 cut(s) | 309, 594, 633, 911, 921 |
| BisI | GCNGC | 3 cut(s) | 501, 1132, 1281 |
| BlsI | GCNGC | 3 cut(s) | 502, 1133, 1282 |
| BmcAI | AGTACT | 1 cut(s) | 307 |
| Bme1390I | CCNGG | 3 cut(s) | 190, 404, 1423 |
| Bme18I | GGWCC | 2 cut(s) | 1386, 1391 |
| BmgT120I | GGNCC | 3 cut(s) | 551, 1386, 1391 |
| BmiI | GGNNCC | 1 cut(s) | 570 |
| BmrFI | CCNGG | 3 cut(s) | 190, 404, 1423 |
| BmsI | GCATC | 1 cut(s) | 463 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1171 |
| BpiI | GAAGAC | 1 cut(s) | 1059 |
| BpmI | CTGGAG | 1 cut(s) | 1515 |
| Bpu10I | CCTNAGC | 2 cut(s) | 504, 762 |
| Bpu14I | TTCGAA | 1 cut(s) | 257 |
| BpuEI | CTTGAG | 3 cut(s) | 65, 726, 1062 |
| BpuMI | CCSGG | 3 cut(s) | 190, 404, 1423 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1227 |
| BsaI | GGTCTC | 2 cut(s) | 606, 1383 |
| BsaWI | WCCGGW | 1 cut(s) | 1388 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1056, 1086 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 419, 855, 1159, 1303 |
| Bse118I | RCCGGY | 2 cut(s) | 271, 1388 |
| Bse1I | ACTGG | 3 cut(s) | 324, 1204, 1388 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1227 |
| BseGI | GGATG | 2 cut(s) | 889, 1200 |
| BseJI | GATNNNNATC | 1 cut(s) | 1227 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 419, 855, 1159, 1303 |
| BseMII | CTCAG | 6 cut(s) | 24, 33, 495, 645, 753, 984 |
| BseNI | ACTGG | 3 cut(s) | 324, 1204, 1388 |
| BseRI | GAGGAG | 7 cut(s) | 75, 132, 423, 779, 893, 983, 1036 |
| BseXI | GCAGC | 3 cut(s) | 512, 1143, 1292 |
| BseYI | CCCAGC | 2 cut(s) | 527, 937 |
| BshFI | GGCC | 3 cut(s) | 412, 553, 1434 |
| BshTI | ACCGGT | 1 cut(s) | 1388 |
| BsiHKAI | GWGCWC | 2 cut(s) | 15, 254 |
| BsiSI | CCGG | 5 cut(s) | 189, 272, 404, 1389, 1422 |
| BslFI | GGGAC | 2 cut(s) | 252, 544 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 419, 855, 1159, 1303 |
| BsmAI | GTCTC | 3 cut(s) | 606, 650, 1383 |
| BsmFI | GGGAC | 2 cut(s) | 252, 544 |
| BsmI | GAATGC | 1 cut(s) | 222 |
| BsnI | GGCC | 3 cut(s) | 412, 553, 1434 |
| Bso31I | GGTCTC | 2 cut(s) | 606, 1383 |
| Bsp119I | TTCGAA | 1 cut(s) | 257 |
| Bsp1286I | GDGCHC | 2 cut(s) | 15, 254 |
| BspACI | CCGC | 1 cut(s) | 1067 |
| BspANI | GGCC | 3 cut(s) | 412, 553, 1434 |
| BspCNI | CTCAG | 6 cut(s) | 25, 34, 496, 646, 754, 985 |
| BspHI | TCATGA | 1 cut(s) | 786 |
| BspLI | GGNNCC | 1 cut(s) | 570 |
| BspPI | GGATC | 3 cut(s) | 516, 810, 1394 |
| BspQI | GCTCTTC | 1 cut(s) | 259 |
| BspT104I | TTCGAA | 1 cut(s) | 257 |
| BspTNI | GGTCTC | 2 cut(s) | 606, 1383 |
| BsrBI | CCGCTC | 1 cut(s) | 1067 |
| BsrFI | RCCGGY | 2 cut(s) | 271, 1388 |
| BsrI | ACTGG | 3 cut(s) | 324, 1204, 1388 |
| BssAI | RCCGGY | 2 cut(s) | 271, 1388 |
| Bst4CI | ACNGT | 2 cut(s) | 826, 962 |
| Bst6I | CTCTTC | 4 cut(s) | 259, 848, 960, 1025 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1128 |
| BstBI | TTCGAA | 1 cut(s) | 257 |
| BstC8I | GCNNGC | 1 cut(s) | 1008 |
| BstDEI | CTNAG | 6 cut(s) | 33, 42, 504, 654, 762, 993 |
| BstF5I | GGATG | 2 cut(s) | 889, 1200 |
| BstHHI | GCGC | 1 cut(s) | 1428 |
| BstMAI | GTCTC | 3 cut(s) | 606, 650, 1383 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 533, 767, 1073, 1128, 1505 |
| BstNSI | RCATGY | 2 cut(s) | 224, 1174 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1171 |
| BstSCI | CCNGG | 3 cut(s) | 188, 402, 1421 |
| BstV1I | GCAGC | 3 cut(s) | 512, 1143, 1292 |
| BstV2I | GAAGAC | 1 cut(s) | 1059 |
| BsuRI | GGCC | 3 cut(s) | 412, 553, 1434 |
| BtsCI | GGATG | 2 cut(s) | 889, 1200 |
| BtsIMutI | CAGTG | 5 cut(s) | 39, 294, 331, 967, 1381 |
| Cac8I | GCNNGC | 1 cut(s) | 1008 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1329 |
| CciI | TCATGA | 1 cut(s) | 786 |
| CfoI | GCGC | 1 cut(s) | 1428 |
| Cfr10I | RCCGGY | 2 cut(s) | 271, 1388 |
| Cfr13I | GGNCC | 3 cut(s) | 551, 1386, 1391 |
| Csp6I | GTAC | 5 cut(s) | 306, 312, 621, 630, 1207 |
| CspAI | ACCGGT | 1 cut(s) | 1388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1273, 1308 |
| CviAII | CATG | 9 cut(s) | 211, 221, 391, 722, 787, 1015, 1171, 1220, 1298 |
| CviQI | GTAC | 5 cut(s) | 306, 312, 621, 630, 1207 |
| DdeI | CTNAG | 6 cut(s) | 33, 42, 504, 654, 762, 993 |
| Eam1104I | CTCTTC | 4 cut(s) | 259, 848, 960, 1025 |
| EarI | CTCTTC | 4 cut(s) | 259, 848, 960, 1025 |
| Ecl136II | GAGCTC | 1 cut(s) | 252 |
| Eco147I | AGGCCT | 2 cut(s) | 412, 1434 |
| Eco24I | GRGCYC | 1 cut(s) | 254 |
| Eco31I | GGTCTC | 2 cut(s) | 606, 1383 |
| Eco47I | GGWCC | 2 cut(s) | 1386, 1391 |
| Eco53kI | GAGCTC | 1 cut(s) | 252 |
| EcoICRI | GAGCTC | 1 cut(s) | 252 |
| EcoRI | GAATTC | 1 cut(s) | 299 |
| EcoT22I | ATGCAT | 1 cut(s) | 222 |
| EcoT38I | GRGCYC | 1 cut(s) | 254 |
| FaeI | CATG | 9 cut(s) | 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301 |
| FaqI | GGGAC | 2 cut(s) | 252, 544 |
| FatI | CATG | 9 cut(s) | 210, 220, 390, 721, 786, 1014, 1170, 1219, 1297 |
| FauNDI | CATATG | 1 cut(s) | 1371 |
| FbaI | TGATCA | 4 cut(s) | 72, 243, 1222, 1300 |
| Fnu4HI | GCNGC | 3 cut(s) | 501, 1132, 1281 |
| FokI | GGATG | 2 cut(s) | 896, 1187 |
| FriOI | GRGCYC | 1 cut(s) | 254 |
| Fsp4HI | GCNGC | 3 cut(s) | 501, 1132, 1281 |
| FspBI | CTAG | 5 cut(s) | 309, 594, 633, 911, 921 |
| GlaI | GCGC | 1 cut(s) | 1427 |
| GluI | GCNGC | 3 cut(s) | 501, 1132, 1281 |
| GsaI | CCCAGC | 2 cut(s) | 531, 941 |
| GsuI | CTGGAG | 1 cut(s) | 1515 |
| HaeIII | GGCC | 3 cut(s) | 412, 553, 1434 |
| HapII | CCGG | 5 cut(s) | 189, 272, 404, 1389, 1422 |
| HhaI | GCGC | 1 cut(s) | 1428 |
| Hin1II | CATG | 9 cut(s) | 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301 |
| Hin6I | GCGC | 1 cut(s) | 1426 |
| HinP1I | GCGC | 1 cut(s) | 1426 |
| HincII | GTYRAC | 1 cut(s) | 1294 |
| HindII | GTYRAC | 1 cut(s) | 1294 |
| HindIII | AAGCTT | 1 cut(s) | 866 |
| HinfI | GANTC | 6 cut(s) | 185, 320, 521, 540, 925, 1326 |
| HpaII | CCGG | 5 cut(s) | 189, 272, 404, 1389, 1422 |
| HphI | GGTGA | 3 cut(s) | 341, 1264, 1307 |
| Hpy166II | GTNNAC | 2 cut(s) | 332, 1294 |
| Hpy188III | TCNNGA | 9 cut(s) | 82, 247, 280, 572, 787, 806, 1079, 1192, 1494 |
| Hpy8I | GTNNAC | 2 cut(s) | 332, 1294 |
| HpyAV | CCTTC | 2 cut(s) | 1029, 1055 |
| HpyCH4III | ACNGT | 2 cut(s) | 826, 962 |
| HpyCH4V | TGCA | 7 cut(s) | 220, 342, 1010, 1122, 1131, 1323, 1508 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 533, 767, 1073, 1128, 1505 |
| HpyF3I | CTNAG | 6 cut(s) | 33, 42, 504, 654, 762, 993 |
| Hsp92II | CATG | 9 cut(s) | 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301 |
| HspAI | GCGC | 1 cut(s) | 1426 |
| Ksp22I | TGATCA | 4 cut(s) | 72, 243, 1222, 1300 |
| LguI | GCTCTTC | 1 cut(s) | 259 |
| LmnI | GCTCC | 7 cut(s) | 10, 145, 458, 758, 934, 1064, 1496 |
| Lsp1109I | GCAGC | 3 cut(s) | 512, 1143, 1292 |
| LweI | GCATC | 1 cut(s) | 463 |
| MaeI | CTAG | 5 cut(s) | 309, 594, 633, 911, 921 |
| MaeIII | GTNAC | 5 cut(s) | 206, 396, 1313, 1331, 1528 |
| MbiI | CCGCTC | 1 cut(s) | 1067 |
| MboII | GAAGA | 8 cut(s) | 246, 865, 977, 1039, 1042, 1051, 1064, 1506 |
| MhlI | GDGCHC | 2 cut(s) | 15, 254 |
| MluCI | AATT | 8 cut(s) | 146, 299, 423, 781, 828, 873, 1046, 1522 |
| MlyI | GAGTC | 1 cut(s) | 194 |
| MmeI | TCCRAC | 2 cut(s) | 681, 1370 |
| Mph1103I | ATGCAT | 1 cut(s) | 222 |
| MseI | TTAA | 2 cut(s) | 582, 1534 |
| MslI | CAYNNNNRTG | 1 cut(s) | 215 |
| MspA1I | CMGCKG | 1 cut(s) | 503 |
| MspI | CCGG | 5 cut(s) | 189, 272, 404, 1389, 1422 |
| MspR9I | CCNGG | 3 cut(s) | 190, 404, 1423 |
| Mva1269I | GAATGC | 1 cut(s) | 222 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 533, 767, 1073, 1128, 1505 |
| NciI | CCSGG | 3 cut(s) | 190, 404, 1423 |
| NdeI | CATATG | 1 cut(s) | 1371 |
| NlaIII | CATG | 9 cut(s) | 214, 224, 394, 725, 790, 1018, 1174, 1223, 1301 |
| NlaIV | GGNNCC | 1 cut(s) | 570 |
| NmuCI | GTSAC | 3 cut(s) | 206, 396, 1313 |
| NsiI | ATGCAT | 1 cut(s) | 222 |
| NspI | RCATGY | 2 cut(s) | 224, 1174 |
| NspV | TTCGAA | 1 cut(s) | 257 |
| PagI | TCATGA | 1 cut(s) | 786 |
| PceI | AGGCCT | 2 cut(s) | 412, 1434 |
| PciI | ACATGT | 1 cut(s) | 1170 |
| PciSI | GCTCTTC | 1 cut(s) | 259 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 263 |
| PctI | GAATGC | 1 cut(s) | 222 |
| PfeI | GAWTC | 5 cut(s) | 320, 521, 540, 925, 1326 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1159 |
| PfoI | TCCNGGA | 1 cut(s) | 188 |
| PinAI | ACCGGT | 1 cut(s) | 1388 |
| PkrI | GCNGC | 3 cut(s) | 502, 1133, 1282 |
| PleI | GAGTC | 1 cut(s) | 193 |
| PpsI | GAGTC | 1 cut(s) | 193 |
| PscI | ACATGT | 1 cut(s) | 1170 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1171 |
| PsiI | TTATAA | 1 cut(s) | 1521 |
| Psp124BI | GAGCTC | 1 cut(s) | 254 |
| PspFI | CCCAGC | 2 cut(s) | 527, 937 |
| PspN4I | GGNNCC | 1 cut(s) | 570 |
| PspPI | GGNCC | 3 cut(s) | 551, 1386, 1391 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1329 |
| PvuII | CAGCTG | 1 cut(s) | 503 |
| RsaI | GTAC | 5 cut(s) | 307, 313, 622, 631, 1208 |
| RsaNI | GTAC | 5 cut(s) | 306, 312, 621, 630, 1207 |
| RseI | CAYNNNNRTG | 1 cut(s) | 215 |
| SacI | GAGCTC | 1 cut(s) | 254 |
| SapI | GCTCTTC | 1 cut(s) | 259 |
| SaqAI | TTAA | 2 cut(s) | 582, 1534 |
| SatI | GCNGC | 3 cut(s) | 501, 1132, 1281 |
| Sau96I | GGNCC | 3 cut(s) | 551, 1386, 1391 |
| ScaI | AGTACT | 1 cut(s) | 307 |
| SchI | GAGTC | 1 cut(s) | 194 |
| ScrFI | CCNGG | 3 cut(s) | 190, 404, 1423 |
| SduI | GDGCHC | 2 cut(s) | 15, 254 |
| SfaNI | GCATC | 1 cut(s) | 463 |
| SfuI | TTCGAA | 1 cut(s) | 257 |
| SinI | GGWCC | 2 cut(s) | 1386, 1391 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 3 cut(s) | 80, 741, 1077 |
| SmoI | CTYRAG | 3 cut(s) | 80, 741, 1077 |
| SpeI | ACTAGT | 2 cut(s) | 308, 632 |
| Sse9I | AATT | 8 cut(s) | 146, 299, 423, 781, 828, 873, 1046, 1522 |
| SseBI | AGGCCT | 2 cut(s) | 412, 1434 |
| SsiI | CCGC | 1 cut(s) | 1067 |
| SspMI | CTAG | 5 cut(s) | 309, 594, 633, 911, 921 |
| SstI | GAGCTC | 1 cut(s) | 254 |
| StuI | AGGCCT | 2 cut(s) | 412, 1434 |
| StyD4I | CCNGG | 3 cut(s) | 188, 402, 1421 |
| TaaI | ACNGT | 2 cut(s) | 826, 962 |
| TaqI | TCGA | 5 cut(s) | 183, 257, 538, 1412, 1437 |
| TasI | AATT | 8 cut(s) | 146, 299, 423, 781, 828, 873, 1046, 1522 |
| TatI | WGTACW | 1 cut(s) | 305 |
| TfiI | GAWTC | 5 cut(s) | 320, 521, 540, 925, 1326 |
| Tru1I | TTAA | 2 cut(s) | 582, 1534 |
| Tru9I | TTAA | 2 cut(s) | 582, 1534 |
| TscAI | CASTG | 5 cut(s) | 46, 301, 331, 967, 1388 |
| TseFI | GTSAC | 3 cut(s) | 206, 396, 1313 |
| TseI | GCWGC | 3 cut(s) | 500, 1131, 1280 |
| Tsp45I | GTSAC | 3 cut(s) | 206, 396, 1313 |
| TspDTI | ATGAA | 3 cut(s) | 775, 1058, 1488 |
| TspRI | CASTG | 5 cut(s) | 46, 301, 331, 967, 1388 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1159 |
| VpaK11BI | GGWCC | 2 cut(s) | 1386, 1391 |
| XapI | RAATTY | 1 cut(s) | 299 |
| XceI | RCATGY | 2 cut(s) | 224, 1174 |
| XspI | CTAG | 5 cut(s) | 309, 594, 633, 911, 921 |
| ZrmI | AGTACT | 1 cut(s) | 307 |
| Zsp2I | ATGCAT | 1 cut(s) | 222 |