Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0015587

Physical Location & Seq

Genomic Coordinates Reverse (-)

81242727 .. 81244256

Gene Structure 1530 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATATGGAGCACCAAGAGATCACTAACCCTGAGATCACTGAGAGCAAAAACAATGGAGGAGGACTACTGATCAAGCTCAAGATGGCAAAGGCTGAACCTTTTTCGGAACAAGGTAATCGGAAACCCGAAAACCTTGCTCCTCAATTCACTAAAATCTGTCATATTTGCCACAAAGGTTTCGAGTCCGGGAAAGCTCTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAAGGGACTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGGTGGCGGTGAAGAATAGTACCACTGAATTCAGTACTGGTACTACTGATTCCAGTGGTGAACCTGTCTGCATAGAGTGTGGTAAGCTTTTCCCGTCAAAGAAATCTCTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGAATTGAGCCTCCTCAATCAACCAAGAACAGCTCCACTTCAACTTTATCTGATGCTTTGCCTCAAAATAATCACAAGGCAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAATCTGGTTCGGGCCTAATCCGAAAGTGGTCCCTGATCTGGTTAAGATTGTGCCTAGCTGGTCTCAAACTGCGAAAAGAGGTACGAAAGGTACTATTCTTTCTGAAACCAACTCCGAGACTGATGATGATTGTGATGATGATGATGATGATGAGTTGGATTTGAGTGAAGCTGTCCATGATCTGATGATGTTAGCTCAAGCCAACCCAAAAGGAGCTGAGGAGGCTACCAACAGCAATTTCATGACCAAAAACGAGGATCATGATGTAAAGGACAGAAGGGTAATTGACTATGTGGGTGTAGCCAAGAAGAGGAAGCAGAAGCTTGAAATTGAGGAGGATGGGAATTTTGTAAGTGGGTTTGATCTAGGGAAGTCTAGGAATCACTTGGAGCTGAGAGTGGATTTGAAAGAGGACAGTGAAGAGGAGTTATCGGATAGTGAAAACTCCGAGAGCATCGTGCTTGCAAACATGATGAGGAGGAAGAAGAGAAGGAAGATGAAATTGGAAGACTTGGAAGGAGCGGTTGTTGCTCAAGATCATCAACATCAAAGCCATCATCACAAAGTTTATACTTGCAGTCTTTGCAACAAGTCATTCCAAAGCCACCAAGCATTGGGAGGACACATGTCAAGCCACAACAAGTTCAAGAACAACATCCAGTACCCTGTGGAACATGATCATCATCAATCTGGTTCTGACGATACTAATAATGGAAATGCTAATCTCACCAACGCAGCCACCCAAGTTGACCATGATCAGGCTGAAAGTCACCAATGCAGATTCTGTATCAGGACTTTTCCAACAGGTCAAGCATTGGGAGGTCATATGAGGTCTCACTGGACCGGTCCAAATGATCCAGCTCAATCGAGCCAGACCGGACGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCACCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGCTGGTTATGCAACTTCTTCTTATAATTCAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

510

Amino Acids

56.43

Weight (kDa)

5.9

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	53 - 74	2.6e-07	C2H2-type zinc finger
zf-C2H2_6	PF13912	369 - 393	2.7e-09	C2H2-type zinc finger
zf-C2H2_6	PF13912	437 - 460	2.4e-07	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41600
malus_domestica	MD03G1043000.v1.1 MD11G1046000.v1.1
prunus_persica	Prupe.6G035400_v2.0.a1
pyrus_communis	pycom03g03320 pycom11g03730
rosa_chinensis	RchiOBHm_Chr5g0074621
rosa_laevigata	RLG00000036491
rosa_multiflora	Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006960
rosa_rugosa	Rorug05G0433300
rosa_samantha	Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1515
AccB7I	CCANNNNNTGG	1 cut(s)	1153
AccBSI	CCGCTC	1 cut(s)	1061
AciI	CCGC	2 cut(s)	278, 1061
AclWI	GGATC	3 cut(s)	516, 804, 1388
AcsI	RAATTY	2 cut(s)	299, 883
AfaI	GTAC	6 cut(s)	292, 307, 313, 622, 631, 1202
AfiI	CCNNNNNNNGG	5 cut(s)	419, 577, 849, 1153, 1297
AflIII	ACRYGT	1 cut(s)	1164
AgeI	ACCGGT	1 cut(s)	1382
AgsI	TTSAA	4 cut(s)	462, 866, 946, 1186
AjuI	GAANNNNNNNTTGG	4 cut(s)	761, 793, 1025, 1057
Alw21I	GWGCWC	2 cut(s)	15, 254
Alw26I	GTCTC	3 cut(s)	606, 650, 1377
AlwI	GGATC	3 cut(s)	516, 804, 1388
AlwNI	CAGNNNCTG	1 cut(s)	1323
AoxI	GGCC	3 cut(s)	410, 551, 1426
ApeKI	GCWGC	2 cut(s)	500, 1274
ApoI	RAATTY	2 cut(s)	299, 883
AsiGI	ACCGGT	1 cut(s)	1382
AspS9I	GGNCC	4 cut(s)	551, 568, 1380, 1385
AsuC2I	CCSGG	2 cut(s)	190, 404
AsuHPI	GGTGA	4 cut(s)	292, 341, 1258, 1301
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	3 cut(s)	568, 1380, 1385
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	1053
Bbv12I	GWGCWC	2 cut(s)	15, 254
BbvCI	CCTCAGC	2 cut(s)	504, 756
BbvI	GCAGC	2 cut(s)	512, 1286
BccI	CCATC	3 cut(s)	79, 872, 1101
BcgI	CGANNNNNNTGC	4 cut(s)	119, 153, 1411, 1445
BclI	TGATCA	4 cut(s)	72, 243, 1216, 1294
BcnI	CCSGG	2 cut(s)	190, 404
BcoDI	GTCTC	3 cut(s)	606, 650, 1377
BfaI	CTAG	3 cut(s)	594, 905, 915
BisI	GCNGC	2 cut(s)	501, 1275
BlsI	GCNGC	2 cut(s)	502, 1276
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	2 cut(s)	190, 404
Bme18I	GGWCC	3 cut(s)	568, 1380, 1385
BmgT120I	GGNCC	4 cut(s)	551, 568, 1380, 1385
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	190, 404
BmsI	GCATC	2 cut(s)	463, 1002
BoxI	GACNNNNGTC	1 cut(s)	1165
BpiI	GAAGAC	1 cut(s)	1053
BpmI	CTGGAG	1 cut(s)	1509
Bpu10I	CCTNAGC	2 cut(s)	504, 756
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	65, 720, 1056
BpuMI	CCSGG	2 cut(s)	190, 404
BsaBI	GATNNNNATC	1 cut(s)	1221
BsaI	GGTCTC	2 cut(s)	606, 1377
BsaWI	WCCGGW	2 cut(s)	1382, 1415
BsaXI	ACNNNNNCTCC	2 cut(s)	1050, 1080
Bsc4I	CCNNNNNNNGG	5 cut(s)	419, 577, 849, 1153, 1297
Bse118I	RCCGGY	2 cut(s)	271, 1382
Bse1I	ACTGG	4 cut(s)	313, 324, 1198, 1382
Bse8I	GATNNNNATC	1 cut(s)	1221
BseGI	GGATG	2 cut(s)	883, 1194
BseJI	GATNNNNATC	1 cut(s)	1221
BseLI	CCNNNNNNNGG	5 cut(s)	419, 577, 849, 1153, 1297
BseMII	CTCAG	5 cut(s)	24, 33, 495, 747, 923
BseNI	ACTGG	4 cut(s)	313, 324, 1198, 1382
BseRI	GAGGAG	7 cut(s)	75, 132, 423, 773, 887, 977, 1030
BseXI	GCAGC	2 cut(s)	512, 1286
BseYI	CCCAGC	1 cut(s)	527
BshFI	GGCC	3 cut(s)	412, 553, 1428
BshTI	ACCGGT	1 cut(s)	1382
BsiHKAI	GWGCWC	2 cut(s)	15, 254
BsiSI	CCGG	5 cut(s)	189, 272, 404, 1383, 1416
BslFI	GGGAC	3 cut(s)	252, 544, 554
BslI	CCNNNNNNNGG	5 cut(s)	419, 577, 849, 1153, 1297
BsmAI	GTCTC	3 cut(s)	606, 650, 1377
BsmFI	GGGAC	3 cut(s)	252, 544, 554
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	3 cut(s)	412, 553, 1428
Bso31I	GGTCTC	2 cut(s)	606, 1377
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	15, 254
BspACI	CCGC	2 cut(s)	278, 1061
BspANI	GGCC	3 cut(s)	412, 553, 1428
BspCNI	CTCAG	5 cut(s)	25, 34, 496, 748, 924
BspHI	TCATGA	2 cut(s)	780, 799
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	3 cut(s)	516, 804, 1388
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	257
BspTNI	GGTCTC	2 cut(s)	606, 1377
BsrBI	CCGCTC	1 cut(s)	1061
BsrFI	RCCGGY	2 cut(s)	271, 1382
BsrI	ACTGG	4 cut(s)	313, 324, 1198, 1382
BssAI	RCCGGY	2 cut(s)	271, 1382
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	4 cut(s)	259, 842, 954, 1019
BstAPI	GCANNNNNTGC	1 cut(s)	1122
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	1002
BstDEI	CTNAG	5 cut(s)	33, 42, 504, 756, 932
BstF5I	GGATG	2 cut(s)	883, 1194
BstMAI	GTCTC	3 cut(s)	606, 650, 1377
BstMWI	GCNNNNNNNGC	5 cut(s)	533, 761, 1067, 1122, 1499
BstNSI	RCATGY	2 cut(s)	224, 1168
BstPAI	GACNNNNGTC	1 cut(s)	1165
BstSCI	CCNGG	2 cut(s)	188, 402
BstV1I	GCAGC	2 cut(s)	512, 1286
BstV2I	GAAGAC	1 cut(s)	1053
BsuRI	GGCC	3 cut(s)	412, 553, 1428
BtsCI	GGATG	2 cut(s)	883, 1194
BtsIMutI	CAGTG	5 cut(s)	39, 294, 331, 961, 1375
Cac8I	GCNNGC	1 cut(s)	1002
CaiI	CAGNNNCTG	1 cut(s)	1323
CciI	TCATGA	2 cut(s)	780, 799
Cfr10I	RCCGGY	2 cut(s)	271, 1382
Cfr13I	GGNCC	4 cut(s)	551, 568, 1380, 1385
CseI	GACGC	1 cut(s)	1428
Csp6I	GTAC	6 cut(s)	291, 306, 312, 621, 630, 1201
CspAI	ACCGGT	1 cut(s)	1382
CspCI	CAANNNNNGTGG	2 cut(s)	1267, 1302
CviQI	GTAC	6 cut(s)	291, 306, 312, 621, 630, 1201
DdeI	CTNAG	5 cut(s)	33, 42, 504, 756, 932
Eam1104I	CTCTTC	4 cut(s)	259, 842, 954, 1019
EarI	CTCTTC	4 cut(s)	259, 842, 954, 1019
Ecl136II	GAGCTC	1 cut(s)	252
Eco147I	AGGCCT	2 cut(s)	412, 1428
Eco24I	GRGCYC	1 cut(s)	254
Eco31I	GGTCTC	2 cut(s)	606, 1377
Eco47I	GGWCC	3 cut(s)	568, 1380, 1385
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	254
FaqI	GGGAC	3 cut(s)	252, 544, 554
FauNDI	CATATG	1 cut(s)	1365
FbaI	TGATCA	4 cut(s)	72, 243, 1216, 1294
Fnu4HI	GCNGC	2 cut(s)	501, 1275
FokI	GGATG	2 cut(s)	890, 1181
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	501, 1275
FspBI	CTAG	3 cut(s)	594, 905, 915
GluI	GCNGC	2 cut(s)	501, 1275
GsaI	CCCAGC	1 cut(s)	531
GsuI	CTGGAG	1 cut(s)	1509
HaeIII	GGCC	3 cut(s)	412, 553, 1428
HapII	CCGG	5 cut(s)	189, 272, 404, 1383, 1416
HgaI	GACGC	1 cut(s)	1428
HincII	GTYRAC	1 cut(s)	1288
HindII	GTYRAC	1 cut(s)	1288
HindIII	AAGCTT	2 cut(s)	356, 860
HinfI	GANTC	6 cut(s)	185, 320, 521, 540, 919, 1320
HpaII	CCGG	5 cut(s)	189, 272, 404, 1383, 1416
HphI	GGTGA	4 cut(s)	292, 341, 1258, 1301
Hpy166II	GTNNAC	2 cut(s)	332, 1288
Hpy188III	TCNNGA	8 cut(s)	82, 247, 781, 800, 1073, 1186, 1330, 1488
Hpy8I	GTNNAC	2 cut(s)	332, 1288
HpyAV	CCTTC	3 cut(s)	810, 1023, 1049
HpyCH4III	ACNGT	1 cut(s)	956
HpyCH4V	TGCA	7 cut(s)	220, 342, 1004, 1116, 1125, 1317, 1502
HpyF10VI	GCNNNNNNNGC	5 cut(s)	533, 761, 1067, 1122, 1499
HpyF3I	CTNAG	5 cut(s)	33, 42, 504, 756, 932
Ksp22I	TGATCA	4 cut(s)	72, 243, 1216, 1294
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	7 cut(s)	10, 145, 458, 752, 928, 1058, 1490
Lsp1109I	GCAGC	2 cut(s)	512, 1286
LweI	GCATC	2 cut(s)	463, 1002
MaeI	CTAG	3 cut(s)	594, 905, 915
MaeIII	GTNAC	4 cut(s)	206, 396, 1307, 1522
MbiI	CCGCTC	1 cut(s)	1061
MboII	GAAGA	9 cut(s)	246, 295, 859, 971, 1033, 1036, 1045, 1058, 1500
MhlI	GDGCHC	2 cut(s)	15, 254
MluCI	AATT	9 cut(s)	146, 299, 423, 775, 822, 867, 883, 1040, 1516
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	675, 1364
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	2 cut(s)	582, 1528
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	5 cut(s)	189, 272, 404, 1383, 1416
MspR9I	CCNGG	2 cut(s)	190, 404
Mva1269I	GAATGC	1 cut(s)	222
MwoI	GCNNNNNNNGC	5 cut(s)	533, 761, 1067, 1122, 1499
NciI	CCSGG	2 cut(s)	190, 404
NdeI	CATATG	1 cut(s)	1365
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	3 cut(s)	206, 396, 1307
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	224, 1168
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	2 cut(s)	780, 799
PceI	AGGCCT	2 cut(s)	412, 1428
PciI	ACATGT	1 cut(s)	1164
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	5 cut(s)	320, 521, 540, 919, 1320
PflMI	CCANNNNNTGG	1 cut(s)	1153
PfoI	TCCNGGA	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	1382
PkrI	GCNGC	2 cut(s)	502, 1276
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	1164
PshAI	GACNNNNGTC	1 cut(s)	1165
PsiI	TTATAA	1 cut(s)	1515
Psp124BI	GAGCTC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	527
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	4 cut(s)	551, 568, 1380, 1385
PstNI	CAGNNNCTG	1 cut(s)	1323
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	6 cut(s)	292, 307, 313, 622, 631, 1202
RsaNI	GTAC	6 cut(s)	291, 306, 312, 621, 630, 1201
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	582, 1528
SatI	GCNGC	2 cut(s)	501, 1275
Sau96I	GGNCC	4 cut(s)	551, 568, 1380, 1385
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	190, 404
SduI	GDGCHC	2 cut(s)	15, 254
SfaNI	GCATC	2 cut(s)	463, 1002
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	3 cut(s)	568, 1380, 1385
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	80, 735, 1071
SmoI	CTYRAG	3 cut(s)	80, 735, 1071
Sse9I	AATT	9 cut(s)	146, 299, 423, 775, 822, 867, 883, 1040, 1516
SseBI	AGGCCT	2 cut(s)	412, 1428
SsiI	CCGC	2 cut(s)	278, 1061
SspMI	CTAG	3 cut(s)	594, 905, 915
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	2 cut(s)	412, 1428
StyD4I	CCNGG	2 cut(s)	188, 402
TaaI	ACNGT	1 cut(s)	956
TaqI	TCGA	5 cut(s)	183, 257, 538, 1406, 1431
TasI	AATT	9 cut(s)	146, 299, 423, 775, 822, 867, 883, 1040, 1516
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	5 cut(s)	320, 521, 540, 919, 1320
Tru1I	TTAA	2 cut(s)	582, 1528
Tru9I	TTAA	2 cut(s)	582, 1528
TscAI	CASTG	5 cut(s)	46, 301, 331, 961, 1382
TseFI	GTSAC	3 cut(s)	206, 396, 1307
TseI	GCWGC	2 cut(s)	500, 1274
Tsp45I	GTSAC	3 cut(s)	206, 396, 1307
TspDTI	ATGAA	3 cut(s)	769, 1052, 1482
TspRI	CASTG	5 cut(s)	46, 301, 331, 961, 1382
Van91I	CCANNNNNTGG	1 cut(s)	1153
VpaK11BI	GGWCC	3 cut(s)	568, 1380, 1385
XapI	RAATTY	2 cut(s)	299, 883
XceI	RCATGY	2 cut(s)	224, 1168
XspI	CTAG	3 cut(s)	594, 905, 915
ZrmI	AGTACT	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.