Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015587

Physical Location & Seq

Genomic Coordinates Reverse (-)

74923037 .. 74925374

Gene Structure 2338 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG535000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGATATGGAGCACCAAGAGATCACTAACCCTGAGATCACTGAGAGCAACAACAATGGAGGAGGACTACTGATCAAGCTCAAGATGGCAAAGGCTGAACCTTTTTTGGAACAAGGTAATCGGAAACCCGGAAACCTTGCTCCTCAATTCACTAAAATCTGTCATATTTGCCACAAAGGTTTCGAGTCCGGGAAAGCTCTGGGAGGTCACATGAGAATGCATGTCCAAGAGAGCAAGGGACTGATCAAGAGCTCTTCGAAATCTCCGAAGCCGGTGGTGGTGAAAAATAGTGCCACTGAATTCAGTACTAGTACGACTGATTCCAGTGGTGAACCTGTCTGCATAGAGTGTGGTAAGATTTTCCCGTCAAAGAAATCTCTCTATGGACACATGAGGTCACACCCGGATAGGCCTTATAGGGGAATTGAGCCTCCTCAATCAACCAAGAACAGCTCCACTTCAACTTTATCTGATGCTTTGCCTCAAAATAATCACAAGGCAGCTGAGGATCAGCAGATTGATTCTGCTGGGACAGCTCGAATCTGGTTCGGGCCTAATCCGAAAGTGGTTCCTGATCTGGTTAAGATTGTGCCTAGCTGGTCTCAAACTGCGAAAAGAGGTACGAAAGGTACTAGTCTTTCTGAAACCAACTCTGAGACTGATGATGATTGTGATGATGATGATGATGAGTTGGATTTGAGTGAAGCTGTCCATGATCTGATGATGTTAGCTCAAGCCAATCCAAAAGGAGCTGAGGAGGCTACCAACAGCAATTTCATGACCAAAAACGAGGATCGTGATGGAAAGGACAGAACGGTAATTGACTATGTGGGTGTAGCCAAGAAGAGGAAGCAGAAGCTTGAAATTGAGGAGGATGGGGATTTTGTAAGTGGCTTTGATCTAGGGAAGTCTAGGAATCACTTGGAGCTGGGAGTGGATTTGAAAGAGGACAGTGAAGAGGAGTTATCGGATAGTGAAAACTCCGAGAGCATTGTGCTTGCAAACATGATGAGGAGGAAGAAGAGAAGGAAGATGAAATTGGAAGACTTGGAAGGAGCGGTTGTTGCTCAAGATCATCAACATCAAAGCCATCATCACAAAGTTTATCCTTGCAGTCTTTGCAACAAGTCATTCCAAAGCCACCAAGCATTGGGAGGACACATGTCAAGCCACAACAAGTTCAAGAACAACATCCAGTACCCTGTGGAACATGACCATCATAAACAATCTGGTTCTGACGATACTAATAATGGAAATGCTAATCTCACCAACGCAGCCACCCAAGTTGACCATGATCAGGCTGAAAGTCACCAATGCAGATTCTGTAACAGGACTTTTCCAACAGGTCAAGCATTGGGAGGTCATATGAGGTCTCACTGGACCGGTCCAAATGACCCAGCTCAATCGAGCCAGACCGGGCGCAAAGGCCTCGACATTGACCTCAATGAGCTTCCACCTATGGAGTATGAACAAGGTATAGACTACTCTGGAGATGGTTATGCAACTTCTTCTTATAATTCAGTTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

509

Amino Acids

56.25

Weight (kDa)

5.81

Isoelectric Point (pI)

50.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_6	PF13912	53 - 74	2.6e-07	C2H2-type zinc finger
zf-C2H2_6	PF13912	368 - 392	7.9e-10	C2H2-type zinc finger
zf-C2H2_6	PF13912	437 - 460	5.8e-09	C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015587)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g41600
malus_domestica	MD03G1043000.v1.1 MD11G1046000.v1.1
prunus_persica	Prupe.6G035400_v2.0.a1
pyrus_communis	pycom03g03320 pycom11g03730
rosa_chinensis	RchiOBHm_Chr5g0074621
rosa_laevigata	RLG00000036491
rosa_multiflora	Rmu_sc0001104.1_g000006 Rmu_sc0019989.1_g000001
rosa_roxburghii	Rroxscaffold_1G00006960
rosa_rugosa	Rorug05G0433300
rosa_samantha	Rh5AG490400 Rh5BG511300 Rh5CG535000 Rh5DG523800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1515
AccB7I	CCANNNNNTGG	1 cut(s)	1150
AccBSI	CCGCTC	1 cut(s)	1058
AciI	CCGC	1 cut(s)	1058
AclWI	GGATC	2 cut(s)	516, 801
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	5 cut(s)	307, 313, 622, 631, 1199
AfiI	CCNNNNNNNGG	4 cut(s)	419, 846, 1150, 1297
AflIII	ACRYGT	1 cut(s)	1161
AgeI	ACCGGT	1 cut(s)	1382
AgsI	TTSAA	4 cut(s)	462, 863, 943, 1183
AhlI	ACTAGT	2 cut(s)	308, 632
AjuI	GAANNNNNNNTTGG	4 cut(s)	758, 790, 1022, 1054
Alw21I	GWGCWC	2 cut(s)	15, 254
Alw26I	GTCTC	3 cut(s)	606, 650, 1377
AlwI	GGATC	2 cut(s)	516, 801
AlwNI	CAGNNNCTG	1 cut(s)	1323
AoxI	GGCC	3 cut(s)	410, 551, 1426
ApeKI	GCWGC	2 cut(s)	500, 1274
ApoI	RAATTY	1 cut(s)	299
AsiGI	ACCGGT	1 cut(s)	1382
AspLEI	GCGC	1 cut(s)	1422
AspS9I	GGNCC	3 cut(s)	551, 1380, 1385
AsuC2I	CCSGG	4 cut(s)	129, 190, 404, 1417
AsuHPI	GGTGA	4 cut(s)	292, 341, 1258, 1301
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	2 cut(s)	1380, 1385
BanII	GRGCYC	1 cut(s)	254
BbsI	GAAGAC	1 cut(s)	1050
Bbv12I	GWGCWC	2 cut(s)	15, 254
BbvCI	CCTCAGC	2 cut(s)	504, 753
BbvI	GCAGC	2 cut(s)	512, 1286
BccI	CCATC	6 cut(s)	79, 794, 869, 1098, 1224, 1487
BcgI	CGANNNNNNTGC	2 cut(s)	1411, 1445
BclI	TGATCA	3 cut(s)	72, 243, 1294
BcnI	CCSGG	4 cut(s)	129, 190, 404, 1417
BcoDI	GTCTC	3 cut(s)	606, 650, 1377
BcuI	ACTAGT	2 cut(s)	308, 632
BfaI	CTAG	5 cut(s)	309, 594, 633, 902, 912
BisI	GCNGC	2 cut(s)	501, 1275
BlsI	GCNGC	2 cut(s)	502, 1276
BmcAI	AGTACT	1 cut(s)	307
Bme1390I	CCNGG	4 cut(s)	129, 190, 404, 1417
Bme18I	GGWCC	2 cut(s)	1380, 1385
BmgT120I	GGNCC	3 cut(s)	551, 1380, 1385
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	4 cut(s)	129, 190, 404, 1417
BmsI	GCATC	1 cut(s)	463
BoxI	GACNNNNGTC	1 cut(s)	1162
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	1 cut(s)	1509
Bpu10I	CCTNAGC	2 cut(s)	504, 753
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	65, 717, 1053
BpuMI	CCSGG	4 cut(s)	129, 190, 404, 1417
BsaI	GGTCTC	2 cut(s)	606, 1377
BsaWI	WCCGGW	1 cut(s)	1382
BsaXI	ACNNNNNCTCC	2 cut(s)	1047, 1077
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 846, 1150, 1297
Bse118I	RCCGGY	2 cut(s)	271, 1382
Bse1I	ACTGG	3 cut(s)	324, 1195, 1382
BseGI	GGATG	2 cut(s)	880, 1191
BseLI	CCNNNNNNNGG	4 cut(s)	419, 846, 1150, 1297
BseMII	CTCAG	5 cut(s)	24, 33, 495, 645, 744
BseNI	ACTGG	3 cut(s)	324, 1195, 1382
BseRI	GAGGAG	7 cut(s)	75, 132, 423, 770, 884, 974, 1027
BseXI	GCAGC	2 cut(s)	512, 1286
BseYI	CCCAGC	3 cut(s)	527, 928, 1396
BshFI	GGCC	3 cut(s)	412, 553, 1428
BshTI	ACCGGT	1 cut(s)	1382
BsiHKAI	GWGCWC	2 cut(s)	15, 254
BsiSI	CCGG	6 cut(s)	129, 189, 272, 404, 1383, 1416
BslFI	GGGAC	2 cut(s)	252, 544
BslI	CCNNNNNNNGG	4 cut(s)	419, 846, 1150, 1297
BsmAI	GTCTC	3 cut(s)	606, 650, 1377
BsmFI	GGGAC	2 cut(s)	252, 544
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	3 cut(s)	412, 553, 1428
Bso31I	GGTCTC	2 cut(s)	606, 1377
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	15, 254
BspACI	CCGC	1 cut(s)	1058
BspANI	GGCC	3 cut(s)	412, 553, 1428
BspCNI	CTCAG	5 cut(s)	25, 34, 496, 646, 745
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	2 cut(s)	516, 801
BspQI	GCTCTTC	1 cut(s)	259
BspT104I	TTCGAA	1 cut(s)	257
BspTNI	GGTCTC	2 cut(s)	606, 1377
BsrBI	CCGCTC	1 cut(s)	1058
BsrFI	RCCGGY	2 cut(s)	271, 1382
BsrI	ACTGG	3 cut(s)	324, 1195, 1382
BssAI	RCCGGY	2 cut(s)	271, 1382
Bst4CI	ACNGT	2 cut(s)	817, 953
Bst6I	CTCTTC	4 cut(s)	259, 839, 951, 1016
BstAPI	GCANNNNNTGC	1 cut(s)	1119
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	999
BstDEI	CTNAG	5 cut(s)	33, 42, 504, 654, 753
BstF5I	GGATG	2 cut(s)	880, 1191
BstHHI	GCGC	1 cut(s)	1422
BstMAI	GTCTC	3 cut(s)	606, 650, 1377
BstMWI	GCNNNNNNNGC	4 cut(s)	533, 758, 1064, 1119
BstNSI	RCATGY	2 cut(s)	224, 1165
BstPAI	GACNNNNGTC	1 cut(s)	1162
BstSCI	CCNGG	4 cut(s)	127, 188, 402, 1415
BstV1I	GCAGC	2 cut(s)	512, 1286
BstV2I	GAAGAC	1 cut(s)	1050
BsuRI	GGCC	3 cut(s)	412, 553, 1428
BtsCI	GGATG	2 cut(s)	880, 1191
BtsIMutI	CAGTG	5 cut(s)	39, 294, 331, 958, 1375
Cac8I	GCNNGC	1 cut(s)	999
CaiI	CAGNNNCTG	1 cut(s)	1323
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	1 cut(s)	1422
Cfr10I	RCCGGY	2 cut(s)	271, 1382
Cfr13I	GGNCC	3 cut(s)	551, 1380, 1385
Csp6I	GTAC	5 cut(s)	306, 312, 621, 630, 1198
CspAI	ACCGGT	1 cut(s)	1382
CspCI	CAANNNNNGTGG	2 cut(s)	1267, 1302
CviAII	CATG	9 cut(s)	211, 221, 391, 713, 778, 1006, 1162, 1211, 1292
CviQI	GTAC	5 cut(s)	306, 312, 621, 630, 1198
DdeI	CTNAG	5 cut(s)	33, 42, 504, 654, 753
Eam1104I	CTCTTC	4 cut(s)	259, 839, 951, 1016
EarI	CTCTTC	4 cut(s)	259, 839, 951, 1016
Ecl136II	GAGCTC	1 cut(s)	252
Eco147I	AGGCCT	2 cut(s)	412, 1428
Eco24I	GRGCYC	1 cut(s)	254
Eco31I	GGTCTC	2 cut(s)	606, 1377
Eco47I	GGWCC	2 cut(s)	1380, 1385
Eco53kI	GAGCTC	1 cut(s)	252
EcoICRI	GAGCTC	1 cut(s)	252
EcoRI	GAATTC	1 cut(s)	299
EcoT22I	ATGCAT	1 cut(s)	222
EcoT38I	GRGCYC	1 cut(s)	254
FaeI	CATG	9 cut(s)	214, 224, 394, 716, 781, 1009, 1165, 1214, 1295
FaqI	GGGAC	2 cut(s)	252, 544
FatI	CATG	9 cut(s)	210, 220, 390, 712, 777, 1005, 1161, 1210, 1291
FauNDI	CATATG	1 cut(s)	1365
FbaI	TGATCA	3 cut(s)	72, 243, 1294
Fnu4HI	GCNGC	2 cut(s)	501, 1275
FokI	GGATG	2 cut(s)	887, 1178
FriOI	GRGCYC	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	501, 1275
FspBI	CTAG	5 cut(s)	309, 594, 633, 902, 912
GlaI	GCGC	1 cut(s)	1421
GluI	GCNGC	2 cut(s)	501, 1275
GsaI	CCCAGC	3 cut(s)	531, 932, 1400
GsuI	CTGGAG	1 cut(s)	1509
HaeIII	GGCC	3 cut(s)	412, 553, 1428
HapII	CCGG	6 cut(s)	129, 189, 272, 404, 1383, 1416
HhaI	GCGC	1 cut(s)	1422
Hin1II	CATG	9 cut(s)	214, 224, 394, 716, 781, 1009, 1165, 1214, 1295
Hin6I	GCGC	1 cut(s)	1420
HinP1I	GCGC	1 cut(s)	1420
HincII	GTYRAC	1 cut(s)	1288
HindII	GTYRAC	1 cut(s)	1288
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	6 cut(s)	185, 320, 521, 540, 916, 1320
HpaII	CCGG	6 cut(s)	129, 189, 272, 404, 1383, 1416
HphI	GGTGA	4 cut(s)	292, 341, 1258, 1301
Hpy166II	GTNNAC	2 cut(s)	332, 1288
Hpy188III	TCNNGA	8 cut(s)	82, 247, 572, 778, 797, 1070, 1183, 1488
Hpy8I	GTNNAC	2 cut(s)	332, 1288
HpyAV	CCTTC	2 cut(s)	1020, 1046
HpyCH4III	ACNGT	2 cut(s)	817, 953
HpyCH4V	TGCA	7 cut(s)	220, 342, 1001, 1113, 1122, 1317, 1502
HpyF10VI	GCNNNNNNNGC	4 cut(s)	533, 758, 1064, 1119
HpyF3I	CTNAG	5 cut(s)	33, 42, 504, 654, 753
Hsp92II	CATG	9 cut(s)	214, 224, 394, 716, 781, 1009, 1165, 1214, 1295
HspAI	GCGC	1 cut(s)	1420
Ksp22I	TGATCA	3 cut(s)	72, 243, 1294
LguI	GCTCTTC	1 cut(s)	259
LmnI	GCTCC	6 cut(s)	10, 145, 458, 749, 925, 1055
Lsp1109I	GCAGC	2 cut(s)	512, 1286
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	5 cut(s)	309, 594, 633, 902, 912
MaeIII	GTNAC	5 cut(s)	206, 396, 1307, 1325, 1522
MbiI	CCGCTC	1 cut(s)	1058
MboII	GAAGA	8 cut(s)	246, 856, 968, 1030, 1033, 1042, 1055, 1500
MhlI	GDGCHC	2 cut(s)	15, 254
MluCI	AATT	8 cut(s)	146, 299, 423, 772, 819, 864, 1037, 1516
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	2 cut(s)	672, 1364
Mph1103I	ATGCAT	1 cut(s)	222
MseI	TTAA	2 cut(s)	582, 1528
MslI	CAYNNNNRTG	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	6 cut(s)	129, 189, 272, 404, 1383, 1416
MspR9I	CCNGG	4 cut(s)	129, 190, 404, 1417
Mva1269I	GAATGC	1 cut(s)	222
MwoI	GCNNNNNNNGC	4 cut(s)	533, 758, 1064, 1119
NciI	CCSGG	4 cut(s)	129, 190, 404, 1417
NdeI	CATATG	1 cut(s)	1365
NlaIII	CATG	9 cut(s)	214, 224, 394, 716, 781, 1009, 1165, 1214, 1295
NlaIV	GGNNCC	1 cut(s)	570
NmuCI	GTSAC	3 cut(s)	206, 396, 1307
NsiI	ATGCAT	1 cut(s)	222
NspI	RCATGY	2 cut(s)	224, 1165
NspV	TTCGAA	1 cut(s)	257
PagI	TCATGA	1 cut(s)	777
PceI	AGGCCT	2 cut(s)	412, 1428
PciI	ACATGT	1 cut(s)	1161
PciSI	GCTCTTC	1 cut(s)	259
PcsI	WCGNNNNNNNCGW	1 cut(s)	263
PctI	GAATGC	1 cut(s)	222
PfeI	GAWTC	5 cut(s)	320, 521, 540, 916, 1320
PflMI	CCANNNNNTGG	1 cut(s)	1150
PfoI	TCCNGGA	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	1382
PkrI	GCNGC	2 cut(s)	502, 1276
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PscI	ACATGT	1 cut(s)	1161
PshAI	GACNNNNGTC	1 cut(s)	1162
PsiI	TTATAA	1 cut(s)	1515
Psp124BI	GAGCTC	1 cut(s)	254
PspFI	CCCAGC	3 cut(s)	527, 928, 1396
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	551, 1380, 1385
PstNI	CAGNNNCTG	1 cut(s)	1323
PvuII	CAGCTG	1 cut(s)	503
RsaI	GTAC	5 cut(s)	307, 313, 622, 631, 1199
RsaNI	GTAC	5 cut(s)	306, 312, 621, 630, 1198
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	582, 1528
SatI	GCNGC	2 cut(s)	501, 1275
Sau96I	GGNCC	3 cut(s)	551, 1380, 1385
ScaI	AGTACT	1 cut(s)	307
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	4 cut(s)	129, 190, 404, 1417
SduI	GDGCHC	2 cut(s)	15, 254
SfaNI	GCATC	1 cut(s)	463
SfuI	TTCGAA	1 cut(s)	257
SinI	GGWCC	2 cut(s)	1380, 1385
SmiMI	CAYNNNNRTG	1 cut(s)	215
SmlI	CTYRAG	3 cut(s)	80, 732, 1068
SmoI	CTYRAG	3 cut(s)	80, 732, 1068
SpeI	ACTAGT	2 cut(s)	308, 632
Sse9I	AATT	8 cut(s)	146, 299, 423, 772, 819, 864, 1037, 1516
SseBI	AGGCCT	2 cut(s)	412, 1428
SsiI	CCGC	1 cut(s)	1058
SspMI	CTAG	5 cut(s)	309, 594, 633, 902, 912
SstI	GAGCTC	1 cut(s)	254
StuI	AGGCCT	2 cut(s)	412, 1428
StyD4I	CCNGG	4 cut(s)	127, 188, 402, 1415
TaaI	ACNGT	2 cut(s)	817, 953
TaqI	TCGA	5 cut(s)	183, 257, 538, 1406, 1431
TasI	AATT	8 cut(s)	146, 299, 423, 772, 819, 864, 1037, 1516
TatI	WGTACW	1 cut(s)	305
TfiI	GAWTC	5 cut(s)	320, 521, 540, 916, 1320
Tru1I	TTAA	2 cut(s)	582, 1528
Tru9I	TTAA	2 cut(s)	582, 1528
TscAI	CASTG	5 cut(s)	46, 301, 331, 958, 1382
TseFI	GTSAC	3 cut(s)	206, 396, 1307
TseI	GCWGC	2 cut(s)	500, 1274
Tsp45I	GTSAC	3 cut(s)	206, 396, 1307
TspDTI	ATGAA	3 cut(s)	766, 1049, 1482
TspRI	CASTG	5 cut(s)	46, 301, 331, 958, 1382
Van91I	CCANNNNNTGG	1 cut(s)	1150
VpaK11BI	GGWCC	2 cut(s)	1380, 1385
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	2 cut(s)	224, 1165
XspI	CTAG	5 cut(s)	309, 594, 633, 902, 912
ZrmI	AGTACT	1 cut(s)	307
Zsp2I	ATGCAT	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.