FvH4_3g41701

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012716
Physical Location & Seq
Reverse (-)
34982140 .. 34982787
648 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41701.t1

Sequence Viewer

Length: 336 bp
ATGGGTCCAGGCGACAGCCCATTTGCTGGAGGTGTTTTTCTTGTATCCATTCACTTCCCACCTGATTACCCTTTCAAGCCACCCAAGGTTGCTTTCCGGACAAAAGTGTACCATCCGAACATTAATAGCAATGGTAGCATCTGCCTTGACATCCTCAAAGAGCAGTGGAGCCCTGCCCTGACCATTTCCAAGGTCCTTCTCTCTATTTGCTCGCTGCTGACAGATCCAAACCCAGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACTGATAGAGTCAAGTATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCTATGGGTTAG

Protein Analysis

112

Amino Acids

12.38

Weight (kDa)

7.78

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 1 - 104 3.5e-43 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012716)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56150
fragaria_vesca FvH4_3g41701
malus_domestica MD03G1041600.v1.1
prunus_persica Prupe.6G033700_v2.0.a1 Prupe.6G033700_v2.0.a1
pyrus_communis pycom03g03230 pycom11g03660
rosa_chinensis RchiOBHm_Chr5g0074801
rosa_multiflora Rmu_sc0000909.1_g000007 Rmu_sc0005365.1_g000005
rosa_roxburghii Rroxscaffold_1G00006770
rosa_rugosa Rorug05G0433800 Rorug05G0433900
rosa_samantha Rh5AG491800 Rh5BG513200 Rh5CG536900 Rh5DG525300
rosa_wichuraiana Rw5G045550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 247
AccB7I CCANNNNNTGG 1 cut(s) 26
AccIII TCCGGA 1 cut(s) 96
AclWI GGATC 3 cut(s) 218, 233, 300
AfaI GTAC 2 cut(s) 110, 269
AfiI CCNNNNNNNGG 1 cut(s) 26
AflIII ACRYGT 1 cut(s) 264
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 2 cut(s) 7, 308
AjuI GAANNNNNNNTTGG 2 cut(s) 77, 109
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 3 cut(s) 218, 233, 300
Aor13HI TCCGGA 1 cut(s) 96
ApeKI GCWGC 1 cut(s) 214
ArsI GACNNNNNNTTYG 1 cut(s) 37
AseI ATTAAT 1 cut(s) 123
AspS9I GGNCC 3 cut(s) 5, 193, 312
AvaII GGWCC 3 cut(s) 5, 193, 312
BanI GGYRCC 1 cut(s) 247
BanII GRGCYC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 201
BccI CCATC 1 cut(s) 120
BciT130I CCWGG 2 cut(s) 9, 310
BciVI GTATCC 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 287
BfuI GTATCC 1 cut(s) 55
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 9, 310
Bme18I GGWCC 3 cut(s) 5, 193, 312
BmgT120I GGNCC 3 cut(s) 5, 193, 312
BmiI GGNNCC 4 cut(s) 6, 170, 249, 314
BmrFI CCNGG 2 cut(s) 9, 310
BmsI GCATC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 84, 189
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 2 cut(s) 9, 310
BseDI CCNNGG 2 cut(s) 84, 189
BseGI GGATG 2 cut(s) 112, 150
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 201
BshNI GGYRCC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 26
BsmAI GTCTC 1 cut(s) 287
Bsp1286I GDGCHC 1 cut(s) 173
Bsp13I TCCGGA 1 cut(s) 96
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 3 cut(s) 223, 238, 305
BspCNI CTCAG 1 cut(s) 244
BspEI TCCGGA 1 cut(s) 96
BspLI GGNNCC 4 cut(s) 6, 170, 249, 314
BspPI GGATC 3 cut(s) 218, 233, 300
BspT107I GGYRCC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 267
BssECI CCNNGG 2 cut(s) 84, 189
BssMI GATC 3 cut(s) 223, 238, 305
BssT1I CCWWGG 2 cut(s) 84, 189
Bst2UI CCWGG 2 cut(s) 9, 310
BstAUI TGTACA 1 cut(s) 267
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 112, 150
BstKTI GATC 3 cut(s) 226, 241, 308
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 3 cut(s) 223, 238, 305
BstMWI GCNNNNNNNGC 1 cut(s) 135
BstNI CCWGG 2 cut(s) 9, 310
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 7, 308
BstV1I GCAGC 1 cut(s) 201
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
BsuI GTATCC 1 cut(s) 55
BtsCI GGATG 2 cut(s) 112, 150
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 5, 193, 312
Csp6I GTAC 2 cut(s) 109, 268
CviAII CATG 1 cut(s) 265
CviJI RGCY 3 cut(s) 18, 79, 171
CviKI_1 RGCY 3 cut(s) 18, 79, 171
CviQI GTAC 2 cut(s) 109, 268
DdeI CTNAG 1 cut(s) 252
DpnI GATC 3 cut(s) 225, 240, 307
DpnII GATC 3 cut(s) 223, 238, 305
Eco130I CCWWGG 2 cut(s) 84, 189
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 3 cut(s) 5, 193, 312
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 2 cut(s) 7, 308
EcoT14I CCWWGG 2 cut(s) 84, 189
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 2 cut(s) 84, 189
FaeI CATG 1 cut(s) 268
FaiI YATR 4 cut(s) 266, 291, 324, 329
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 2 cut(s) 99, 137
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 48
HapII CCGG 1 cut(s) 97
Hin1II CATG 1 cut(s) 268
HinfI GANTC 1 cut(s) 282
HpaII CCGG 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 97
Hpy8I GTNNAC 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 135
HpyF3I CTNAG 1 cut(s) 252
Hsp92II CATG 1 cut(s) 268
Kpn2I TCCGGA 1 cut(s) 96
Kzo9I GATC 3 cut(s) 223, 238, 305
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 201
LweI GCATC 1 cut(s) 147
MalI GATC 3 cut(s) 225, 240, 307
MboI GATC 3 cut(s) 223, 238, 305
MflI RGATCY 1 cut(s) 223
MhlI GDGCHC 1 cut(s) 173
MlyI GAGTC 1 cut(s) 291
MnlI CCTC 3 cut(s) 23, 164, 252
MroI TCCGGA 1 cut(s) 96
MseI TTAA 1 cut(s) 123
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 2 cut(s) 9, 310
MvaI CCWGG 2 cut(s) 9, 310
MwoI GCNNNNNNNGC 1 cut(s) 135
NdeII GATC 3 cut(s) 223, 238, 305
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 4 cut(s) 6, 170, 249, 314
NspI RCATGY 1 cut(s) 268
PciI ACATGT 1 cut(s) 264
PflMI CCANNNNNTGG 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 308
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 193
PscI ACATGT 1 cut(s) 264
PshBI ATTAAT 1 cut(s) 123
Psp5II RGGWCCY 1 cut(s) 193
Psp6I CCWGG 2 cut(s) 7, 308
PspGI CCWGG 2 cut(s) 7, 308
PspN4I GGNNCC 4 cut(s) 6, 170, 249, 314
PspPI GGNCC 3 cut(s) 5, 193, 312
PspPPI RGGWCCY 1 cut(s) 193
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 2 cut(s) 110, 269
RsaNI GTAC 2 cut(s) 109, 268
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 3 cut(s) 223, 238, 305
Sau96I GGNCC 3 cut(s) 5, 193, 312
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 2 cut(s) 9, 310
SduI GDGCHC 1 cut(s) 173
SetI ASST 4 cut(s) 34, 64, 90, 195
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 3 cut(s) 5, 193, 312
StyD4I CCNGG 2 cut(s) 7, 308
StyI CCWWGG 2 cut(s) 84, 189
TaqI TCGA 1 cut(s) 304
TatI WGTACW 1 cut(s) 267
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TscAI CASTG 1 cut(s) 170
TseI GCWGC 1 cut(s) 214
TspRI CASTG 1 cut(s) 170
Van91I CCANNNNNTGG 1 cut(s) 26
VpaK11BI GGWCC 3 cut(s) 5, 193, 312
VspI ATTAAT 1 cut(s) 123
XceI RCATGY 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.