Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000909.1

Orthogroup ID

OG0012716

Physical Location & Seq

Genomic Coordinates Forward (+)

33664 .. 34789

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000909.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggcttcgaagcggatcagcaaggagttgaaggacctgcagaaagacccgccggcttcctgcagtgctggtcctgttgctgaggatatgttccattggcaagctacgattatgggtccagccgacagcccatttgctgggggtgttttccttgtatccattcacttcccacctgattaccctttcaagccacctaaggttgctttccggacaaaagtgtaccatcccaacattaatagcaatggtagtatctgccttgacatcctcaaagagcagtggagccctgccctgaccatttccaaggtccttctctccatatgctcactgctgacagatccaaacccagatgatcctctggtgcctgagattgctcacatgtacaagactgatagagtcaagtatgagactactgctcgatcctggactcagaagtatgctatgggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

148

Amino Acids

16.46

Weight (kDa)

7.72

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56150
fragaria_vesca	FvH4_3g41701
malus_domestica	MD03G1041600.v1.1
prunus_persica	Prupe.6G033700_v2.0.a1 Prupe.6G033700_v2.0.a1
pyrus_communis	pycom03g03230 pycom11g03660
rosa_chinensis	RchiOBHm_Chr5g0074801
rosa_multiflora	Rmu_sc0000909.1_g000007 Rmu_sc0005365.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006770
rosa_rugosa	Rorug05G0433800 Rorug05G0433900
rosa_samantha	Rh5AG491800 Rh5BG513200 Rh5CG536900 Rh5DG525300
rosa_wichuraiana	Rw5G045550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	2 cut(s)	13, 50
AclWI	GGATC	4 cut(s)	23, 329, 344, 411
AfaI	GTAC	2 cut(s)	221, 380
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	31, 187
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	4 cut(s)	23, 329, 344, 411
Aor13HI	TCCGGA	1 cut(s)	207
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	234
AspS9I	GGNCC	4 cut(s)	34, 71, 116, 304
AsuII	TTCGAA	1 cut(s)	8
AvaII	GGWCC	4 cut(s)	34, 71, 116, 304
AxyI	CCTNAGG	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	38, 61
BfuAI	ACCTGC	1 cut(s)	45
BfuI	GTATCC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	4 cut(s)	34, 71, 116, 304
BmgT120I	GGNCC	4 cut(s)	34, 71, 116, 304
BmiI	GGNNCC	3 cut(s)	117, 281, 360
BmrFI	CCNGG	1 cut(s)	421
Bpu10I	CCTNAGC	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	300
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse118I	RCCGGY	1 cut(s)	52
Bse21I	CCTNAGG	1 cut(s)	195
Bse3DI	GCAATG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	223, 261
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	3 cut(s)	72, 354, 440
BseYI	CCCAGC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	53, 208
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp13I	TCCGGA	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	4 cut(s)	15, 334, 349, 416
BspACI	CCGC	2 cut(s)	13, 50
BspCNI	CTCAG	3 cut(s)	73, 355, 439
BspEI	TCCGGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	117, 281, 360
BspMAI	CTGCAG	2 cut(s)	42, 65
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	4 cut(s)	23, 329, 344, 411
BspT104I	TTCGAA	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	247
BsrFI	RCCGGY	1 cut(s)	52
BsrGI	TGTACA	1 cut(s)	378
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	15, 334, 349, 416
BssT1I	CCWWGG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	421
BstAUI	TGTACA	1 cut(s)	378
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	2 cut(s)	54, 102
BstDEI	CTNAG	4 cut(s)	81, 195, 363, 426
BstF5I	GGATG	2 cut(s)	223, 261
BstKTI	GATC	4 cut(s)	18, 337, 352, 419
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	4 cut(s)	15, 334, 349, 416
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	2 cut(s)	38, 61
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
Bsu36I	CCTNAGG	1 cut(s)	195
BsuI	GTATCC	1 cut(s)	166
BtsCI	GGATG	2 cut(s)	223, 261
BtsI	GCAGTG	3 cut(s)	70, 281, 323
BtsIMutI	CAGTG	3 cut(s)	70, 281, 323
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	54, 102
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	4 cut(s)	34, 71, 116, 304
Csp6I	GTAC	2 cut(s)	220, 379
CviAII	CATG	1 cut(s)	376
CviJI	RGCY	7 cut(s)	5, 56, 104, 122, 129, 190, 282
CviKI_1	RGCY	7 cut(s)	5, 56, 104, 122, 129, 190, 282
CviQI	GTAC	2 cut(s)	220, 379
DdeI	CTNAG	4 cut(s)	81, 195, 363, 426
DpnI	GATC	4 cut(s)	17, 336, 351, 418
DpnII	GATC	4 cut(s)	15, 334, 349, 416
Eco130I	CCWWGG	1 cut(s)	300
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	4 cut(s)	34, 71, 116, 304
Eco81I	CCTNAGG	1 cut(s)	195
EcoO109I	RGGNCCY	2 cut(s)	34, 304
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	300
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	1 cut(s)	300
FaeI	CATG	1 cut(s)	379
FaiI	YATR	8 cut(s)	89, 113, 317, 319, 377, 402, 435, 440
FatI	CATG	1 cut(s)	375
FauI	CCCGC	1 cut(s)	57
FauNDI	CATATG	1 cut(s)	317
FokI	GGATG	2 cut(s)	210, 248
FriOI	GRGCYC	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	141
HapII	CCGG	2 cut(s)	53, 208
Hin1II	CATG	1 cut(s)	379
HinfI	GANTC	2 cut(s)	393, 424
HpaII	CCGG	2 cut(s)	53, 208
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	429
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	25, 317
HpyCH4V	TGCA	2 cut(s)	40, 63
HpyF3I	CTNAG	4 cut(s)	81, 195, 363, 426
Hsp92II	CATG	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	207
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	4 cut(s)	15, 334, 349, 416
LmnI	GCTCC	1 cut(s)	279
MalI	GATC	4 cut(s)	17, 336, 351, 418
MboI	GATC	4 cut(s)	15, 334, 349, 416
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	284
MlyI	GAGTC	2 cut(s)	402, 418
MnlI	CCTC	3 cut(s)	76, 275, 363
MroI	TCCGGA	1 cut(s)	207
MroNI	GCCGGC	1 cut(s)	52
MseI	TTAA	1 cut(s)	234
MspI	CCGG	2 cut(s)	53, 208
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
NaeI	GCCGGC	1 cut(s)	54
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	4 cut(s)	15, 334, 349, 416
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	117, 281, 360
NspI	RCATGY	1 cut(s)	379
NspV	TTCGAA	1 cut(s)	8
PciI	ACATGT	1 cut(s)	375
PdiI	GCCGGC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	419
PleI	GAGTC	2 cut(s)	401, 418
PpsI	GAGTC	2 cut(s)	401, 418
PpuMI	RGGWCCY	2 cut(s)	34, 304
PscI	ACATGT	1 cut(s)	375
PshBI	ATTAAT	1 cut(s)	234
Psp5II	RGGWCCY	2 cut(s)	34, 304
Psp6I	CCWGG	1 cut(s)	419
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	117, 281, 360
PspPI	GGNCC	4 cut(s)	34, 71, 116, 304
PspPPI	RGGWCCY	2 cut(s)	34, 304
PstI	CTGCAG	2 cut(s)	42, 65
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	221, 380
RsaNI	GTAC	2 cut(s)	220, 379
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	4 cut(s)	15, 334, 349, 416
Sau96I	GGNCC	4 cut(s)	34, 71, 116, 304
SchI	GAGTC	2 cut(s)	402, 418
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	6 cut(s)	39, 106, 175, 196, 201, 306
SfcI	CTRYAG	2 cut(s)	38, 61
SfuI	TTCGAA	1 cut(s)	8
SinI	GGWCC	4 cut(s)	34, 71, 116, 304
SsiI	CCGC	2 cut(s)	13, 50
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	300
TaqI	TCGA	2 cut(s)	8, 415
TatI	WGTACW	1 cut(s)	378
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	70, 281, 330
TspRI	CASTG	3 cut(s)	70, 281, 330
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	4 cut(s)	34, 71, 116, 304
VspI	ATTAAT	1 cut(s)	234
XceI	RCATGY	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.