Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012716

Physical Location & Seq

Genomic Coordinates Reverse (-)

81409535 .. 81411730

Gene Structure 2196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG513200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTCCATTGGCAAGCTACGATTATGGGTCCAGCCGACAGCCCATTTGCTGGGGGTGTTTTCCTTGTATCCATTCACTTCCCACCTGATTACCCTTTCAAGCCACCTAAGGTTGCTTTCCGGACAAAAGTGTACCATCCCAACATTAATAGCAATGGTAGTATCTGCCTTGACATCCTCAAAGAGCAGTGGAGCCCTGCCCTGACCATTTCCAAGGTCCTTCTCTCCATATGCTCACTGCTGACAGATCCAAACCCAGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACTGATAGAGTCAAGTATGAGACTACTGCTCGATCCTGGACTCAGAAGTATGCTATGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

7.8

Isoelectric Point (pI)

40.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	1 - 112	1.3e-47	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56150
fragaria_vesca	FvH4_3g41701
malus_domestica	MD03G1041600.v1.1
prunus_persica	Prupe.6G033700_v2.0.a1 Prupe.6G033700_v2.0.a1
pyrus_communis	pycom03g03230 pycom11g03660
rosa_chinensis	RchiOBHm_Chr5g0074801
rosa_multiflora	Rmu_sc0000909.1_g000007 Rmu_sc0005365.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006770
rosa_rugosa	Rorug05G0433800 Rorug05G0433900
rosa_samantha	Rh5AG491800 Rh5BG513200 Rh5CG536900 Rh5DG525300
rosa_wichuraiana	Rw5G045550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	271
AccB7I	CCANNNNNTGG	1 cut(s)	50
AccIII	TCCGGA	1 cut(s)	120
AclWI	GGATC	3 cut(s)	242, 257, 324
AfaI	GTAC	2 cut(s)	134, 293
AfiI	CCNNNNNNNGG	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	332
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	242, 257, 324
Aor13HI	TCCGGA	1 cut(s)	120
ArsI	GACNNNNNNTTYG	2 cut(s)	29, 61
AseI	ATTAAT	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	29, 217
AvaII	GGWCC	2 cut(s)	29, 217
AxyI	CCTNAGG	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	197
BccI	CCATC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	334
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	334
Bme18I	GGWCC	2 cut(s)	29, 217
BmgT120I	GGNCC	2 cut(s)	29, 217
BmiI	GGNNCC	3 cut(s)	30, 194, 273
BmrFI	CCNGG	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	213
BsaWI	WCCGGW	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse21I	CCTNAGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	136, 174
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMI	GCAATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	267, 353
BseYI	CCCAGC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	121
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	197
Bsp13I	TCCGGA	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	247, 262, 329
BspCNI	CTCAG	2 cut(s)	268, 352
BspEI	TCCGGA	1 cut(s)	120
BspLI	GGNNCC	3 cut(s)	30, 194, 273
BspPI	GGATC	3 cut(s)	242, 257, 324
BspT107I	GGYRCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	160
BsrGI	TGTACA	1 cut(s)	291
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	3 cut(s)	247, 262, 329
BssT1I	CCWWGG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	334
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	108, 276, 339
BstF5I	GGATG	2 cut(s)	136, 174
BstKTI	GATC	3 cut(s)	250, 265, 332
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	247, 262, 329
BstNI	CCWGG	1 cut(s)	334
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	136, 174
BtsI	GCAGTG	2 cut(s)	194, 236
BtsIMutI	CAGTG	2 cut(s)	194, 236
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	29, 217
Csp6I	GTAC	2 cut(s)	133, 292
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	5 cut(s)	17, 35, 42, 103, 195
CviKI_1	RGCY	5 cut(s)	17, 35, 42, 103, 195
CviQI	GTAC	2 cut(s)	133, 292
DdeI	CTNAG	3 cut(s)	108, 276, 339
DpnI	GATC	3 cut(s)	249, 264, 331
DpnII	GATC	3 cut(s)	247, 262, 329
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	197
Eco47I	GGWCC	2 cut(s)	29, 217
Eco81I	CCTNAGG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	26, 230, 232, 290, 315, 348, 353
FatI	CATG	1 cut(s)	288
FauNDI	CATATG	1 cut(s)	230
FokI	GGATG	2 cut(s)	123, 161
FriOI	GRGCYC	1 cut(s)	197
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	1 cut(s)	121
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	2 cut(s)	306, 337
HpaII	CCGG	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	342
Hpy188III	TCNNGA	1 cut(s)	121
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	108, 276, 339
Hsp92II	CATG	1 cut(s)	292
Kpn2I	TCCGGA	1 cut(s)	120
Kzo9I	GATC	3 cut(s)	247, 262, 329
LmnI	GCTCC	1 cut(s)	192
MalI	GATC	3 cut(s)	249, 264, 331
MboI	GATC	3 cut(s)	247, 262, 329
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	197
MlyI	GAGTC	2 cut(s)	315, 331
MnlI	CCTC	2 cut(s)	188, 276
MroI	TCCGGA	1 cut(s)	120
MseI	TTAA	1 cut(s)	147
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	334
NdeI	CATATG	1 cut(s)	230
NdeII	GATC	3 cut(s)	247, 262, 329
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	3 cut(s)	30, 194, 273
NspI	RCATGY	1 cut(s)	292
PciI	ACATGT	1 cut(s)	288
PflMI	CCANNNNNTGG	1 cut(s)	50
PfoI	TCCNGGA	1 cut(s)	332
PleI	GAGTC	2 cut(s)	314, 331
PpsI	GAGTC	2 cut(s)	314, 331
PpuMI	RGGWCCY	1 cut(s)	217
PscI	ACATGT	1 cut(s)	288
PshBI	ATTAAT	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	332
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	332
PspN4I	GGNNCC	3 cut(s)	30, 194, 273
PspPI	GGNCC	2 cut(s)	29, 217
PspPPI	RGGWCCY	1 cut(s)	217
PsuI	RGATCY	1 cut(s)	247
RsaI	GTAC	2 cut(s)	134, 293
RsaNI	GTAC	2 cut(s)	133, 292
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	247, 262, 329
Sau96I	GGNCC	2 cut(s)	29, 217
SchI	GAGTC	2 cut(s)	315, 331
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	197
SetI	ASST	5 cut(s)	19, 88, 109, 114, 219
SinI	GGWCC	2 cut(s)	29, 217
StyD4I	CCNGG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	213
TaqI	TCGA	1 cut(s)	328
TatI	WGTACW	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	2 cut(s)	194, 243
TspRI	CASTG	2 cut(s)	194, 243
Van91I	CCANNNNNTGG	1 cut(s)	50
VpaK11BI	GGWCC	2 cut(s)	29, 217
VspI	ATTAAT	1 cut(s)	147
XceI	RCATGY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.