Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012716

Physical Location & Seq

Genomic Coordinates Forward (+)

2831450 .. 2832863

Gene Structure 1414 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g03660.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCTTCAAAGAGGATCAACAAGGAGTTGAAGGATCTCCAGAAAGACCCGCCTGCTTCTTGCAGTGCAGGTCCTGTTGCTGATGATATGTTCCACTGGCAAGCAACAATTATGGGTCCTGCAGAAAGCCCATTTTCAGGTGGTGTTTTTCTTGTGTCCATTCACTTCCCCCCTGATTATCCTTTCAAGCCACCCAAGGTTGCTTTCCGAACAAAAGTTTACCATCCGAACATCAATAGCAATGGTAGTATCTGCCTTGACATCCTCAAGGAGCAGTGGAGTCCTGCCCTGACCATTTCCAAGGTCCTCCTCTCCATTTGCTCCCTGCTGACAGATCCAAACCCCGATGATCCTCTGGTGCCTGAGATTGCGCACATGTACAAGACTGATCGACAGAAGTATGAGACAACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.54

Weight (kDa)

7.72

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56150
fragaria_vesca	FvH4_3g41701
malus_domestica	MD03G1041600.v1.1
prunus_persica	Prupe.6G033700_v2.0.a1 Prupe.6G033700_v2.0.a1
pyrus_communis	pycom03g03230 pycom11g03660
rosa_chinensis	RchiOBHm_Chr5g0074801
rosa_multiflora	Rmu_sc0000909.1_g000007 Rmu_sc0005365.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006770
rosa_rugosa	Rorug05G0433800 Rorug05G0433900
rosa_samantha	Rh5AG491800 Rh5BG513200 Rh5CG536900 Rh5DG525300
rosa_wichuraiana	Rw5G045550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
Acc36I	ACCTGC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	358
AciI	CCGC	1 cut(s)	50
AclWI	GGATC	5 cut(s)	23, 42, 329, 344, 411
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	3 cut(s)	9, 31, 187
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	5 cut(s)	23, 42, 329, 344, 411
AlwNI	CAGNNNCTG	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	373
AspS9I	GGNCC	4 cut(s)	71, 116, 304, 423
AvaII	GGWCC	4 cut(s)	71, 116, 304, 423
BanI	GGYRCC	1 cut(s)	358
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	120
BfuAI	ACCTGC	1 cut(s)	59
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	4 cut(s)	71, 116, 304, 423
BmgT120I	GGNCC	4 cut(s)	71, 116, 304, 423
BmiI	GGNNCC	3 cut(s)	117, 360, 425
BmrFI	CCNGG	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	251
BsaJI	CCNNGG	3 cut(s)	195, 300, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	3 cut(s)	195, 300, 438
BseGI	GGATG	2 cut(s)	223, 261
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	299
BsgI	GTGCAG	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	358
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	50
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	117, 360, 425
BspMAI	CTGCAG	1 cut(s)	124
BspMI	ACCTGC	1 cut(s)	59
BspPI	GGATC	5 cut(s)	23, 42, 329, 344, 411
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	195, 300, 438
BssMI	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
BssT1I	CCWWGG	3 cut(s)	195, 300, 438
Bst2UI	CCWGG	1 cut(s)	421
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	54, 102
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	2 cut(s)	223, 261
BstHHI	GCGC	1 cut(s)	373
BstKTI	GATC	6 cut(s)	18, 37, 337, 352, 391, 419
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	34, 334
BstYI	RGATCY	2 cut(s)	34, 334
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	2 cut(s)	223, 261
BtsI	GCAGTG	2 cut(s)	70, 281
BtsIMutI	CAGTG	3 cut(s)	70, 94, 281
BveI	ACCTGC	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	54, 102
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	1 cut(s)	373
Cfr13I	GGNCC	4 cut(s)	71, 116, 304, 423
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	376, 439
CviJI	RGCY	4 cut(s)	5, 129, 190, 444
CviKI_1	RGCY	4 cut(s)	5, 129, 190, 444
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	6 cut(s)	17, 36, 336, 351, 390, 418
DpnII	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
Eco130I	CCWWGG	3 cut(s)	195, 300, 438
Eco47I	GGWCC	4 cut(s)	71, 116, 304, 423
EcoO109I	RGGNCCY	3 cut(s)	71, 116, 304
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	3 cut(s)	195, 300, 438
ErhI	CCWWGG	3 cut(s)	195, 300, 438
FaeI	CATG	2 cut(s)	379, 442
FaiI	YATR	6 cut(s)	89, 113, 377, 402, 435, 440
FatI	CATG	2 cut(s)	375, 438
FauI	CCCGC	1 cut(s)	57
FokI	GGATG	2 cut(s)	210, 248
FspBI	CTAG	1 cut(s)	445
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	373
Hin1II	CATG	2 cut(s)	379, 442
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HinfI	GANTC	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	209, 228
Hpy188III	TCNNGA	1 cut(s)	40
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	3 cut(s)	63, 68, 122
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	2 cut(s)	379, 442
HspAI	GCGC	1 cut(s)	371
Kzo9I	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
LmnI	GCTCC	2 cut(s)	271, 326
MaeI	CTAG	1 cut(s)	445
MalI	GATC	6 cut(s)	17, 36, 336, 351, 390, 418
MboI	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
MflI	RGATCY	2 cut(s)	34, 334
MluCI	AATT	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	6, 275, 317, 320, 363
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
NlaIII	CATG	2 cut(s)	379, 442
NlaIV	GGNNCC	3 cut(s)	117, 360, 425
NsbI	TGCGCA	1 cut(s)	372
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PfoI	TCCNGGA	1 cut(s)	419
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PpuMI	RGGWCCY	3 cut(s)	71, 116, 304
PscI	ACATGT	1 cut(s)	375
Psp5II	RGGWCCY	3 cut(s)	71, 116, 304
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	117, 360, 425
PspPI	GGNCC	4 cut(s)	71, 116, 304, 423
PspPPI	RGGWCCY	3 cut(s)	71, 116, 304
PstI	CTGCAG	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	34, 334
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
Sau3AI	GATC	6 cut(s)	15, 34, 334, 349, 388, 416
Sau96I	GGNCC	4 cut(s)	71, 116, 304, 423
SchI	GAGTC	1 cut(s)	289
ScrFI	CCNGG	1 cut(s)	421
SetI	ASST	4 cut(s)	73, 142, 201, 306
SfcI	CTRYAG	1 cut(s)	120
SinI	GGWCC	4 cut(s)	71, 116, 304, 423
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	1 cut(s)	108
SsiI	CCGC	1 cut(s)	50
SspMI	CTAG	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	3 cut(s)	195, 300, 438
TaqI	TCGA	2 cut(s)	391, 415
TasI	AATT	1 cut(s)	108
TatI	WGTACW	1 cut(s)	378
TscAI	CASTG	3 cut(s)	70, 101, 281
TspRI	CASTG	3 cut(s)	70, 101, 281
VpaK11BI	GGWCC	4 cut(s)	71, 116, 304, 423
XceI	RCATGY	1 cut(s)	379
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.