Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0012716

Physical Location & Seq

Genomic Coordinates Forward (+)

2555272 .. 2558427

Gene Structure 3156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G033700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCTCAAAGCGAATCAACAAGGAGTTGAAGGACCTTCAGAAAGACCCACCCGCATCCTGCAGTGCTGGTCCTGTTGCTGATGATATGTTCCACTGGCAAGCGACTATTATGGGTCCAGCAGACAGCCCATTTGCTGGAGGTGTTTTTCTTGTATCCATTCACTTCCCACCTGATTACCCTTTCAAGCCACCCAAGGTTGCCTTCCGGACAAAAGTCTACCATCCGAACATTAATAGCAATGGCAGTATCTGCCTTGACATCCTCAAAGAGCAGTGGAGCCCTGCCCTGACCATTTCCAAGGTACTTCTCTCCATATGCTCGCTGCTGACAGATCCAAACCCCGATGATCCTCTGGTGCCTGAGATTGCTCACATGTACAAGACTGATAGAGTGAAGTATGAGACAACTGCTCGATCCTGGACTCAGAAGTATGCCATGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

UQ_con

Protein Analysis

149

Amino Acids

16.48

Weight (kDa)

7.72

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56150
fragaria_vesca	FvH4_3g41701
malus_domestica	MD03G1041600.v1.1
prunus_persica	Prupe.6G033700_v2.0.a1 Prupe.6G033700_v2.0.a1
pyrus_communis	pycom03g03230 pycom11g03660
rosa_chinensis	RchiOBHm_Chr5g0074801
rosa_multiflora	Rmu_sc0000909.1_g000007 Rmu_sc0005365.1_g000005
rosa_roxburghii	Rroxscaffold_1G00006770
rosa_rugosa	Rorug05G0433800 Rorug05G0433900
rosa_samantha	Rh5AG491800 Rh5BG513200 Rh5CG536900 Rh5DG525300
rosa_wichuraiana	Rw5G045550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	219
AccIII	TCCGGA	1 cut(s)	207
AciI	CCGC	1 cut(s)	54
AclWI	GGATC	3 cut(s)	329, 344, 411
AcuI	CTGAAG	1 cut(s)	23
AfaI	GTAC	2 cut(s)	306, 380
AfiI	CCNNNNNNNGG	1 cut(s)	137
AflIII	ACRYGT	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	31, 187
AjnI	CCWGG	1 cut(s)	419
AjuI	GAANNNNNNNTTGG	2 cut(s)	188, 220
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	3 cut(s)	329, 344, 411
AlwNI	CAGNNNCTG	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	207
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	325
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	234
AspS9I	GGNCC	3 cut(s)	34, 71, 116
AvaII	GGWCC	3 cut(s)	34, 71, 116
BanI	GGYRCC	1 cut(s)	358
BanII	GRGCYC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	312
BccI	CCATC	1 cut(s)	231
BciT130I	CCWGG	1 cut(s)	421
BciVI	GTATCC	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	1 cut(s)	445
BfmI	CTRYAG	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	326
BlsI	GCNGC	1 cut(s)	327
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	3 cut(s)	34, 71, 116
BmgT120I	GGNCC	3 cut(s)	34, 71, 116
BmiI	GGNNCC	3 cut(s)	117, 281, 360
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	1 cut(s)	65
BoxI	GACNNNNGTC	1 cut(s)	215
BpmI	CTGGAG	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	195, 300, 438
BsaWI	WCCGGW	1 cut(s)	207
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	1 cut(s)	247
BseAI	TCCGGA	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	3 cut(s)	195, 300, 438
BseGI	GGATG	3 cut(s)	56, 223, 261
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMI	GCAATG	1 cut(s)	247
BseMII	CTCAG	2 cut(s)	354, 440
BseNI	ACTGG	1 cut(s)	101
BseXI	GCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	208
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp13I	TCCGGA	1 cut(s)	207
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	334, 349, 416
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	1 cut(s)	54
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	355, 439
BspEI	TCCGGA	1 cut(s)	207
BspLI	GGNNCC	3 cut(s)	117, 281, 360
BspMAI	CTGCAG	1 cut(s)	65
BspPI	GGATC	3 cut(s)	329, 344, 411
BspT107I	GGYRCC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	247
BsrGI	TGTACA	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	3 cut(s)	195, 300, 438
BssMI	GATC	3 cut(s)	334, 349, 416
BssT1I	CCWWGG	3 cut(s)	195, 300, 438
Bst2UI	CCWGG	1 cut(s)	421
BstAPI	GCANNNNNTGC	1 cut(s)	252
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	102, 323
BstDEI	CTNAG	2 cut(s)	363, 426
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	3 cut(s)	56, 223, 261
BstKTI	GATC	3 cut(s)	337, 352, 419
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	3 cut(s)	334, 349, 416
BstMWI	GCNNNNNNNGC	1 cut(s)	252
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	1 cut(s)	379
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BsuI	GTATCC	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	3 cut(s)	56, 223, 261
BtsI	GCAGTG	2 cut(s)	70, 281
BtsIMutI	CAGTG	3 cut(s)	70, 94, 281
Cac8I	GCNNGC	2 cut(s)	102, 323
CaiI	CAGNNNCTG	1 cut(s)	252
Cfr13I	GGNCC	3 cut(s)	34, 71, 116
Csp6I	GTAC	2 cut(s)	305, 379
CviAII	CATG	2 cut(s)	376, 439
CviJI	RGCY	5 cut(s)	5, 129, 190, 282, 444
CviKI_1	RGCY	5 cut(s)	5, 129, 190, 282, 444
CviQI	GTAC	2 cut(s)	305, 379
DdeI	CTNAG	2 cut(s)	363, 426
DpnI	GATC	3 cut(s)	336, 351, 418
DpnII	GATC	3 cut(s)	334, 349, 416
Eco130I	CCWWGG	3 cut(s)	195, 300, 438
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	3 cut(s)	34, 71, 116
Eco57I	CTGAAG	1 cut(s)	23
EcoO109I	RGGNCCY	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	3 cut(s)	195, 300, 438
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	3 cut(s)	195, 300, 438
FaeI	CATG	2 cut(s)	379, 442
FaiI	YATR	8 cut(s)	89, 113, 317, 319, 377, 402, 435, 440
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
FatI	CATG	2 cut(s)	375, 438
FauI	CCCGC	1 cut(s)	61
FauNDI	CATATG	1 cut(s)	317
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	1 cut(s)	326
FokI	GGATG	3 cut(s)	43, 210, 248
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	326
FspBI	CTAG	1 cut(s)	445
GluI	GCNGC	1 cut(s)	326
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	208
Hin1II	CATG	2 cut(s)	379, 442
HinfI	GANTC	2 cut(s)	15, 424
HpaII	CCGG	1 cut(s)	208
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	3 cut(s)	42, 228, 429
Hpy188III	TCNNGA	1 cut(s)	208
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	25, 47, 214
HpyCH4V	TGCA	1 cut(s)	63
HpyF10VI	GCNNNNNNNGC	1 cut(s)	252
HpyF3I	CTNAG	2 cut(s)	363, 426
Hsp92II	CATG	2 cut(s)	379, 442
Kpn2I	TCCGGA	1 cut(s)	207
Kzo9I	GATC	3 cut(s)	334, 349, 416
LmnI	GCTCC	1 cut(s)	279
Lsp1109I	GCAGC	1 cut(s)	312
LweI	GCATC	1 cut(s)	65
MaeI	CTAG	1 cut(s)	445
MalI	GATC	3 cut(s)	336, 351, 418
MboI	GATC	3 cut(s)	334, 349, 416
MflI	RGATCY	1 cut(s)	334
MhlI	GDGCHC	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	418
MnlI	CCTC	4 cut(s)	16, 134, 275, 363
MroI	TCCGGA	1 cut(s)	207
MseI	TTAA	1 cut(s)	234
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	438
NdeI	CATATG	1 cut(s)	317
NdeII	GATC	3 cut(s)	334, 349, 416
NlaIII	CATG	2 cut(s)	379, 442
NlaIV	GGNNCC	3 cut(s)	117, 281, 360
NspI	RCATGY	1 cut(s)	379
PciI	ACATGT	1 cut(s)	375
PfeI	GAWTC	1 cut(s)	15
PflMI	CCANNNNNTGG	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	327
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	34
PscI	ACATGT	1 cut(s)	375
PshAI	GACNNNNGTC	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	234
Psp5II	RGGWCCY	1 cut(s)	34
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	3 cut(s)	117, 281, 360
PspPI	GGNCC	3 cut(s)	34, 71, 116
PspPPI	RGGWCCY	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	65
PstNI	CAGNNNCTG	1 cut(s)	252
PsuI	RGATCY	1 cut(s)	334
RsaI	GTAC	2 cut(s)	306, 380
RsaNI	GTAC	2 cut(s)	305, 379
SaqAI	TTAA	1 cut(s)	234
SatI	GCNGC	1 cut(s)	326
Sau3AI	GATC	3 cut(s)	334, 349, 416
Sau96I	GGNCC	3 cut(s)	34, 71, 116
SchI	GAGTC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	5 cut(s)	39, 145, 175, 201, 306
SfaNI	GCATC	1 cut(s)	65
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	3 cut(s)	34, 71, 116
SsiI	CCGC	1 cut(s)	54
SspMI	CTAG	1 cut(s)	445
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	3 cut(s)	195, 300, 438
TaqI	TCGA	1 cut(s)	415
TatI	WGTACW	1 cut(s)	378
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	3 cut(s)	70, 101, 281
TseI	GCWGC	1 cut(s)	325
TspRI	CASTG	3 cut(s)	70, 101, 281
Van91I	CCANNNNNTGG	1 cut(s)	137
VpaK11BI	GGWCC	3 cut(s)	34, 71, 116
VspI	ATTAAT	1 cut(s)	234
XceI	RCATGY	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.