Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003762

Physical Location & Seq

Genomic Coordinates Reverse (-)

35149666 .. 35150943

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCGCCCGAGCCGGAGGACAACATCAAAGACGAGAAAAACCCTAGACCCCTCGACGCAGACGACATCGCACTCCTCAAAACCTATGGAAAAGGATCTTATTCAACTCCCATCAAAAACATGGAGAAGGAAATCAAAGACAAGGCTAAAACCGTGAAAAACTTATGTGGCATTAAGGAATCCCACACTGGCCTAGCTACTCCTACCCACTGGGATCTTAATTCAGATCAACAGCTGAAGGCGGAGAAACCTCTCAAGGTGGCAAGATGCACCAAGATAATTAGCCCTAATTCCGAAGATGCAAAATACGTCATCAACATTGCGCATATGGGCAAGTTTGTGGTGGGATTGGGCGATAGGGTTTCCCCAACTGATATAGAAGAAGGTATGCGTGTCGGAATCGACCTACACAAGTATCAAATTCAGATTCCTTTGCCTCCGAGAATTGATCCAACTGTGACCATGATGACTGTGGAAGACAAGCCAGATGTGACATACAATGACGTAGGTGGATGTAAGGACCAGATCGAAAAGATGCGAGAGGTTGTTGAGCTACCATTGCTTCACCCTGAGAAGTTTGTCAAGCTTGGAATTGACCCTCCCAAGGGTGTTCTCTGCTATGGTCCTCCAGGAACTGGAAAAACCCTTCTAGCTAGAGCCGTGGCGAATCGAACCGATGCTTGCTTCATTCGTGTCATTGGGAGTGAGCTTGTTCAGAAATATGTAGGAGAAGGAGCTAGGATGGTACGAGAGCTGTTCCAATTGGCAAGGACTAAGAAGGCTTGCATTATCTTTTTCGATGAAGTTGATGCCATAGGAGGTGCCAGGTTTGATGATGGTGCTGGCGGAGACACTGAAGTACAACGTACAATGCTTGAGATTGTGAACCAGCTCGACGGGTTTGATGCAAGAGGAAACATTAAGGTGTTGATGGCAACAAACAGGCCTGACACTCTAGATCCGGCATTGTTGCGCCCCGGAAGATTGGATAGGAAGGTCGAGTTTGGTCTGCCTGATATGGAGAGTAGAACTCAGATTTTCAAGATCCATGCAAGGACAATGAATTGTGAACGAGACATTAGATTTGAACTTCTGGCTCGGATGTGCCCTAATTCCACCGGAGCCGATATAAGAAGCGTGTGCACAGAAGCCGGAATGTTTGCCATTCGGGCACGGAGGAAGACGGTGACTGAGAAGGACTTCCTTGACGCCGTGAACAAAGTTATTAAGGGTTACCAAAAATTTTGTGCGACGCCCAAGTATATGGTTTACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

426

Amino Acids

47.46

Weight (kDa)

8.38

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_PRS7	PF21236	79 - 146	1.6e-33	26S proteasome regulatory subunit 7, OB domain
AAA	PF00004	204 - 337	1.4e-40	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	359 - 402	5e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53750 AT1G53780 AT1G53780 AT1G53780 AT1G53780
fragaria_vesca	FvH4_3g41880 FvH4_3g42030 FvH4_6g36060
malus_domestica	MD09G1171700.v1.1 MD17G1155300.v1.1
prunus_persica	Prupe.3G030100_v2.0.a1
pyrus_communis	pycom09g08900
rosa_chinensis	RchiOBHm_Chr2g0148151 RchiOBHm_Chr5g0074901 RchiOBHm_Chr5g0075071
rosa_laevigata	RLG00000020321 RLG00000036526
rosa_multiflora	Rmu_sc0001516.1_g000100 Rmu_sc0006984.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006550 Rroxscaffold_2G00099040
rosa_rugosa	Rorug02G0404000 Rorug02G0417600 Rorug05G0435900
rosa_samantha	Rh2AG462600 Rh2BG475600 Rh2CG449400 Rh2DG484300 Rh5AG493400 Rh5BG514900 Rh5CG538500 Rh5DG527300
rosa_wichuraiana	Rw2G037710 Rw5G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	324
AccB1I	GGYRCC	2 cut(s)	4, 821
AccB7I	CCANNNNNTGG	1 cut(s)	635
AciI	CCGC	2 cut(s)	242, 846
AclWI	GGATC	5 cut(s)	103, 222, 443, 953, 1039
AcsI	RAATTY	2 cut(s)	420, 1241
AcuI	CTGAAG	2 cut(s)	257, 876
AcyI	GRCGYC	3 cut(s)	5, 1209, 1253
AfaI	GTAC	3 cut(s)	747, 861, 868
AfiI	CCNNNNNNNGG	3 cut(s)	604, 605, 635
AgsI	TTSAA	3 cut(s)	105, 1042, 1088
AjnI	CCWGG	2 cut(s)	628, 824
AluBI	AGCT	9 cut(s)	197, 235, 553, 586, 653, 709, 737, 754, 892
AluI	AGCT	9 cut(s)	197, 235, 553, 586, 653, 709, 737, 754, 892
Alw21I	GWGCWC	1 cut(s)	1145
Alw26I	GTCTC	2 cut(s)	843, 1068
Alw44I	GTGCAC	1 cut(s)	1141
AlwI	GGATC	5 cut(s)	103, 222, 443, 953, 1039
AlwNI	CAGNNNCTG	1 cut(s)	635
Ama87I	CYCGRG	1 cut(s)	8
AoxI	GGCC	2 cut(s)	190, 944
ApaLI	GTGCAC	1 cut(s)	1141
ApoI	RAATTY	2 cut(s)	420, 1241
ArsI	GACNNNNNNTTYG	2 cut(s)	1067, 1099
Asp700I	GAANNNNTTC	1 cut(s)	1199
AspLEI	GCGC	3 cut(s)	7, 325, 975
AspS9I	GGNCC	2 cut(s)	520, 623
AsuC2I	CCSGG	1 cut(s)	978
AsuHPI	GGTGA	2 cut(s)	557, 1198
AvaI	CYCGRG	1 cut(s)	8
AvaII	GGWCC	2 cut(s)	520, 623
BaeGI	GKGCMC	3 cut(s)	1109, 1145, 1174
BaeI	ACNNNNGTAYC	2 cut(s)	398, 431
BanI	GGYRCC	2 cut(s)	4, 821
BbsI	GAAGAC	2 cut(s)	483, 1187
Bbv12I	GWGCWC	1 cut(s)	1145
BccI	CCATC	4 cut(s)	119, 736, 830, 925
BceAI	ACGGC	2 cut(s)	644, 1196
BciT130I	CCWGG	2 cut(s)	630, 826
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	2 cut(s)	843, 1068
BfaI	CTAG	6 cut(s)	45, 194, 650, 654, 738, 956
BfoI	RGCGCY	1 cut(s)	8
BglI	GCCNNNNNGGC	1 cut(s)	1169
Bme1390I	CCNGG	3 cut(s)	630, 826, 978
Bme18I	GGWCC	2 cut(s)	520, 623
BmeT110I	CYCGRG	1 cut(s)	8
BmgT120I	GGNCC	2 cut(s)	520, 623
BmiI	GGNNCC	3 cut(s)	6, 823, 1123
BmrFI	CCNGG	3 cut(s)	630, 826, 978
BmrI	ACTGGG	1 cut(s)	220
BmsI	GCATC	6 cut(s)	257, 289, 525, 667, 799, 895
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	2 cut(s)	483, 1187
BplI	GAGNNNNNCTC	2 cut(s)	1015, 1047
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	2 cut(s)	239, 896
BpuMI	CCSGG	1 cut(s)	978
BsaHI	GRCGYC	3 cut(s)	5, 1209, 1253
BsaJI	CCNNGG	3 cut(s)	603, 660, 976
BsaWI	WCCGGW	1 cut(s)	1118
Bsc4I	CCNNNNNNNGG	3 cut(s)	604, 605, 635
Bse1I	ACTGG	3 cut(s)	193, 215, 640
Bse3DI	GCAATG	2 cut(s)	318, 557
BseBI	CCWGG	2 cut(s)	630, 826
BseDI	CCNNGG	3 cut(s)	603, 660, 976
BseGI	GGATG	3 cut(s)	518, 747, 1107
BseLI	CCNNNNNNNGG	3 cut(s)	604, 605, 635
BseMI	GCAATG	2 cut(s)	318, 557
BseMII	CTCAG	3 cut(s)	561, 1046, 1182
BseNI	ACTGG	3 cut(s)	193, 215, 640
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	3 cut(s)	1109, 1145, 1174
BshFI	GGCC	2 cut(s)	192, 946
BshNI	GGYRCC	2 cut(s)	4, 821
BsiHKAI	GWGCWC	1 cut(s)	1145
BsiHKCI	CYCGRG	1 cut(s)	8
BsiSI	CCGG	5 cut(s)	14, 962, 978, 1119, 1152
BslI	CCNNNNNNNGG	3 cut(s)	604, 605, 635
BsmAI	GTCTC	2 cut(s)	843, 1068
BsnI	GGCC	2 cut(s)	192, 946
BsoBI	CYCGRG	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	1109, 1145, 1174
Bsp143I	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
BspACI	CCGC	2 cut(s)	242, 846
BspANI	GGCC	2 cut(s)	192, 946
BspCNI	CTCAG	3 cut(s)	562, 1045, 1183
BspLI	GGNNCC	3 cut(s)	6, 823, 1123
BspPI	GGATC	5 cut(s)	103, 222, 443, 953, 1039
BspT107I	GGYRCC	2 cut(s)	4, 821
BsrDI	GCAATG	2 cut(s)	318, 557
BsrI	ACTGG	3 cut(s)	193, 215, 640
BssECI	CCNNGG	3 cut(s)	603, 660, 976
BssMI	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
BssNI	GRCGYC	3 cut(s)	5, 1209, 1253
BssT1I	CCWWGG	1 cut(s)	603
Bst2UI	CCWGG	2 cut(s)	630, 826
Bst4CI	ACNGT	4 cut(s)	154, 457, 472, 1186
BstACI	GRCGYC	3 cut(s)	5, 1209, 1253
BstC8I	GCNNGC	3 cut(s)	682, 784, 844
BstDEI	CTNAG	4 cut(s)	570, 774, 1032, 1191
BstDSI	CCRYGG	1 cut(s)	660
BstEII	GGTNACC	1 cut(s)	1232
BstF5I	GGATG	3 cut(s)	518, 747, 1107
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 325, 975
BstKTI	GATC	7 cut(s)	98, 217, 229, 451, 528, 961, 1047
BstMAI	GTCTC	2 cut(s)	843, 1068
BstMBI	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 1169
BstNI	CCWGG	2 cut(s)	630, 826
BstPI	GGTNACC	1 cut(s)	1232
BstSCI	CCNGG	3 cut(s)	628, 824, 976
BstSLI	GKGCMC	3 cut(s)	1109, 1145, 1174
BstV2I	GAAGAC	2 cut(s)	483, 1187
BstX2I	RGATCY	4 cut(s)	95, 214, 958, 1044
BstXI	CCANNNNNNTGG	1 cut(s)	1264
BstYI	RGATCY	4 cut(s)	95, 214, 958, 1044
BsuRI	GGCC	2 cut(s)	192, 946
BtgI	CCRYGG	1 cut(s)	660
BtgZI	GCGATG	1 cut(s)	52
BtsCI	GGATG	3 cut(s)	518, 747, 1107
BtsIMutI	CAGTG	3 cut(s)	186, 208, 852
Cac8I	GCNNGC	3 cut(s)	682, 784, 844
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	3 cut(s)	7, 325, 975
Cfr13I	GGNCC	2 cut(s)	520, 623
CseI	GACGC	3 cut(s)	65, 1217, 1261
Csp6I	GTAC	3 cut(s)	746, 860, 867
CviAII	CATG	3 cut(s)	121, 463, 1049
CviQI	GTAC	3 cut(s)	746, 860, 867
DdeI	CTNAG	4 cut(s)	570, 774, 1032, 1191
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	7 cut(s)	97, 216, 228, 450, 527, 960, 1046
DpnII	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
EciI	GGCGGA	2 cut(s)	257, 861
Eco130I	CCWWGG	1 cut(s)	603
Eco147I	AGGCCT	1 cut(s)	946
Eco47I	GGWCC	2 cut(s)	520, 623
Eco57I	CTGAAG	2 cut(s)	257, 876
Eco88I	CYCGRG	1 cut(s)	8
Eco91I	GGTNACC	1 cut(s)	1232
EcoO65I	GGTNACC	1 cut(s)	1232
EcoRII	CCWGG	2 cut(s)	628, 824
EcoT14I	CCWWGG	1 cut(s)	603
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	603
FaeI	CATG	3 cut(s)	124, 466, 1052
FatI	CATG	3 cut(s)	120, 462, 1048
FauNDI	CATATG	1 cut(s)	327
FokI	GGATG	3 cut(s)	525, 754, 1114
FspBI	CTAG	6 cut(s)	45, 194, 650, 654, 738, 956
FspI	TGCGCA	1 cut(s)	324
GlaI	GCGC	3 cut(s)	6, 324, 974
GsuI	CTGGAG	1 cut(s)	612
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	2 cut(s)	192, 946
HapII	CCGG	5 cut(s)	14, 962, 978, 1119, 1152
HgaI	GACGC	3 cut(s)	65, 1217, 1261
HhaI	GCGC	3 cut(s)	7, 325, 975
Hin1I	GRCGYC	3 cut(s)	5, 1209, 1253
Hin1II	CATG	3 cut(s)	124, 466, 1052
Hin6I	GCGC	3 cut(s)	5, 323, 973
HinP1I	GCGC	3 cut(s)	5, 323, 973
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	179, 399, 427, 667
HpaII	CCGG	5 cut(s)	14, 962, 978, 1119, 1152
HphI	GGTGA	2 cut(s)	557, 1198
Hpy166II	GTNNAC	5 cut(s)	886, 1070, 1143, 1216, 1270
Hpy188I	TCNGA	8 cut(s)	226, 295, 398, 426, 441, 717, 1035, 1101
Hpy188III	TCNNGA	2 cut(s)	956, 1042
Hpy8I	GTNNAC	5 cut(s)	886, 1070, 1143, 1216, 1270
Hpy99I	CGWCG	3 cut(s)	59, 899, 1255
HpyAV	CCTTC	8 cut(s)	121, 232, 377, 656, 725, 772, 988, 1189
HpyCH4III	ACNGT	4 cut(s)	154, 457, 472, 1186
HpyCH4IV	ACGT	3 cut(s)	309, 504, 865
HpyCH4V	TGCA	6 cut(s)	270, 302, 786, 908, 1052, 1143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 1169
HpyF3I	CTNAG	4 cut(s)	570, 774, 1032, 1191
HpySE526I	ACGT	3 cut(s)	309, 504, 865
Hsp92I	GRCGYC	3 cut(s)	5, 1209, 1253
Hsp92II	CATG	3 cut(s)	124, 466, 1052
HspAI	GCGC	3 cut(s)	5, 323, 973
KasI	GGCGCC	1 cut(s)	4
Kzo9I	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
LmnI	GCTCC	2 cut(s)	734, 1121
LweI	GCATC	6 cut(s)	257, 289, 525, 667, 799, 895
MaeI	CTAG	6 cut(s)	45, 194, 650, 654, 738, 956
MaeII	ACGT	3 cut(s)	309, 504, 865
MaeIII	GTNAC	4 cut(s)	457, 490, 1186, 1232
MalI	GATC	7 cut(s)	97, 216, 228, 450, 527, 960, 1046
MboI	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
MboII	GAAGA	5 cut(s)	308, 392, 488, 993, 1192
MfeI	CAATTG	2 cut(s)	761, 1273
MflI	RGATCY	4 cut(s)	95, 214, 958, 1044
MhlI	GDGCHC	3 cut(s)	1109, 1145, 1174
Mly113I	GGCGCC	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	376, 476
MroXI	GAANNNNTTC	1 cut(s)	1199
MseI	TTAA	4 cut(s)	174, 219, 921, 1227
MslI	CAYNNNNRTG	1 cut(s)	923
MspA1I	CMGCKG	1 cut(s)	235
MspI	CCGG	5 cut(s)	14, 962, 978, 1119, 1152
MspR9I	CCNGG	3 cut(s)	630, 826, 978
MunI	CAATTG	2 cut(s)	761, 1273
MvaI	CCWGG	2 cut(s)	630, 826
MwoI	GCNNNNNNNGC	2 cut(s)	559, 1169
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	1 cut(s)	978
NdeI	CATATG	1 cut(s)	327
NdeII	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
NlaIII	CATG	3 cut(s)	124, 466, 1052
NlaIV	GGNNCC	3 cut(s)	6, 823, 1123
NmuCI	GTSAC	3 cut(s)	457, 490, 1186
NsbI	TGCGCA	1 cut(s)	324
PceI	AGGCCT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdmI	GAANNNNTTC	1 cut(s)	1199
PfeI	GAWTC	4 cut(s)	179, 399, 427, 667
PflMI	CCANNNNNTGG	1 cut(s)	635
PfoI	TCCNGGA	1 cut(s)	628
PluTI	GGCGCC	1 cut(s)	8
Psp6I	CCWGG	2 cut(s)	628, 824
PspEI	GGTNACC	1 cut(s)	1232
PspGI	CCWGG	2 cut(s)	628, 824
PspN4I	GGNNCC	3 cut(s)	6, 823, 1123
PspPI	GGNCC	2 cut(s)	520, 623
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	4 cut(s)	95, 214, 958, 1044
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	3 cut(s)	747, 861, 868
RsaNI	GTAC	3 cut(s)	746, 860, 867
RseI	CAYNNNNRTG	1 cut(s)	923
SaqAI	TTAA	4 cut(s)	174, 219, 921, 1227
Sau3AI	GATC	7 cut(s)	95, 214, 226, 448, 525, 958, 1044
Sau96I	GGNCC	2 cut(s)	520, 623
ScrFI	CCNGG	3 cut(s)	630, 826, 978
SduI	GDGCHC	3 cut(s)	1109, 1145, 1174
SfaNI	GCATC	6 cut(s)	257, 289, 525, 667, 799, 895
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	520, 623
SmiMI	CAYNNNNRTG	1 cut(s)	923
SmlI	CTYRAG	2 cut(s)	254, 875
SmoI	CTYRAG	2 cut(s)	254, 875
SseBI	AGGCCT	1 cut(s)	946
SsiI	CCGC	2 cut(s)	242, 846
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	6 cut(s)	45, 194, 650, 654, 738, 956
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	3 cut(s)	628, 824, 976
StyI	CCWWGG	1 cut(s)	603
TaaI	ACNGT	4 cut(s)	154, 457, 472, 1186
TaiI	ACGT	3 cut(s)	312, 507, 868
TaqI	TCGA	7 cut(s)	54, 402, 528, 670, 798, 894, 999
TatI	WGTACW	1 cut(s)	859
TfiI	GAWTC	4 cut(s)	179, 399, 427, 667
Tru1I	TTAA	4 cut(s)	174, 219, 921, 1227
Tru9I	TTAA	4 cut(s)	174, 219, 921, 1227
TscAI	CASTG	3 cut(s)	193, 215, 859
TseFI	GTSAC	3 cut(s)	457, 490, 1186
Tsp45I	GTSAC	3 cut(s)	457, 490, 1186
TspDTI	ATGAA	3 cut(s)	676, 816, 1076
TspGWI	ACGGA	1 cut(s)	1189
TspRI	CASTG	3 cut(s)	193, 215, 859
Van91I	CCANNNNNTGG	1 cut(s)	635
VneI	GTGCAC	1 cut(s)	1141
VpaK11BI	GGWCC	2 cut(s)	520, 623
XapI	RAATTY	2 cut(s)	420, 1241
XbaI	TCTAGA	1 cut(s)	955
XcmI	CCANNNNNNNNNTGG	2 cut(s)	118, 469
XmnI	GAANNNNTTC	1 cut(s)	1199
XspI	CTAG	6 cut(s)	45, 194, 650, 654, 738, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.