FvH4_6g36060

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
28401204 .. 28405194
3991 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g36060.t1

Sequence Viewer

Length: 1530 bp
ATGTTTGGTTCCATTGCCTCACTGTTAGCAGTTTTGTGTTTTAGTTTCAAGTGTCGTAAAGAAAATAAAAGGTCGGATAATTACTCAAGTCGGAGTAAACCGACCCTGACCCGGCCCACATTTACCATCTTCACTATAAAGACCAAAATCCCAAAACGCAGAGCAGAAGGCAGCTTGAGCAGAAAGAAAGTCGACCCCTTTAAATTATCTCTCTTCAGTTCCGTTCTGTACTCTTCTACTTTCCGGTTTCCAATGGCACCAGAACCCGAAGATATCAAGGACGAGAAGAACCCTAGACCCCTCGATGAGGACGACATCGCCCTCCTCAAGACCTATGGATTAGGGCCGTACTCGACTCATATTAAGAAGACTGAGAAGGAAATTAAGGAGATGGCTAAAAAGGTCAATGATTTATGCGGTATTAAGGAGTCTGACACTGGGCTAGCTGCTCCCAGCCAGTGGGATCTTGTTTCGGATAAGCAGATGATGCAGGAGGAGCAGCCTCTGCAGGTTGCGAGGTGCACGAAGATTATCAGTCCCAATTCTGAAGATGCTAAATATGTCATCAATGTTAAGCAAATCGCAAAGTTTGTAGTCGGCCTGGGTGACAAGGTTTCCCCAACAGATATTGAAGAAGGCATGCGTGTCGGGGTTGATCGTAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTCACCATGATGACGGTGGAAGAGAAGCCAGATGTAACGTATAACGATGTTGGTGGTTGTAAGGAGCAAATTGAGAAGATGCGAGAAGTTGTTGAGCTACCAATGCTTCATCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCTAAGGGCGTTCTCTGCTATGGTCCTCCAGGGACTGGTAAAACACTTCTAGCTAGAGCTGTGGCTAACAGAACTGATGCTTGTTTCATTCGTGTTATTGGGAGTGAACTTGTTCAAAAGTATGTTGGTGAGGGGGCTAGGATGGTTCGAGAGCTATTTCAGATGGCACGCTCGAAAAAGGCGTGCATTGTGTTTTTTGATGAAGTTGATGCCATAGGAGGGGCTAGATTTGATGATGGTGTAGGTGGAGATAATGAGGTTCAGCGCACCATGCTTGAAATTGTGAATCAGCTAGATGGGTTTGATGCGCGTGGAAACATTAAAGTCTTGATGGCAACAAACAGGCCGGACACGCTAGACCCAGCATTGTTACGTCCTGGACGATTGGATCGTAAGGTTGAGTTTGGCCTCCCAGATATGGAGAGCCGGACGCAGATCTTTAAGATCCACACACGAACAATGAACTGTGAAAGAGATGTTAGATTTGAACTTCTGGCTCGGCTGTGTCCAAATTCAACTGGAGCTGATATAAGAAGTGTATGCACAGAAGCCGGAATGTATGCCATCCGTGCACGAAGGAAGACAGTAACGGAAAAAGACTTCCTTGATGCTGTGAATAAGGTCATCAAGGGTTACCAGAAGTTCAGTGCTACTCCGAAATACATGGTTTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

510

Amino Acids

57.24

Weight (kDa)

9.06

Isoelectric Point (pI)

38.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_PRS7 PF21236 162 - 230 5.8e-39 26S proteasome regulatory subunit 7, OB domain
AAA PF00004 288 - 421 3.4e-40 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 443 - 486 2.4e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 256
AccB7I CCANNNNNTGG 2 cut(s) 459, 887
AccI GTMKAC 1 cut(s) 192
AccII CGCG 1 cut(s) 1162
AciI CCGC 1 cut(s) 417
AclWI GGATC 5 cut(s) 471, 695, 842, 1248, 1291
AcsI RAATTY 2 cut(s) 827, 1363
AcuI CTGAAG 2 cut(s) 199, 567
AfaI GTAC 2 cut(s) 230, 350
AfiI CCNNNNNNNGG 7 cut(s) 111, 307, 459, 857, 887, 1071, 1270
AgsI TTSAA 6 cut(s) 49, 632, 968, 1130, 1340, 1368
AjnI CCWGG 3 cut(s) 600, 880, 1228
AluBI AGCT 9 cut(s) 174, 446, 805, 838, 905, 911, 1006, 1144, 1376
AluI AGCT 9 cut(s) 174, 446, 805, 838, 905, 911, 1006, 1144, 1376
Alw21I GWGCWC 2 cut(s) 524, 1426
Alw44I GTGCAC 2 cut(s) 520, 1422
AlwI GGATC 5 cut(s) 471, 695, 842, 1248, 1291
AlwNI CAGNNNCTG 2 cut(s) 505, 887
AoxI GGCC 5 cut(s) 113, 344, 598, 1196, 1258
ApaLI GTGCAC 2 cut(s) 520, 1422
ApeKI GCWGC 3 cut(s) 171, 446, 499
ApoI RAATTY 2 cut(s) 827, 1363
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 2 cut(s) 1119, 1162
AspS9I GGNCC 3 cut(s) 114, 344, 875
AsuC2I CCSGG 1 cut(s) 112
AsuHPI GGTGA 3 cut(s) 617, 703, 992
AsuNHI GCTAGC 1 cut(s) 442
AvaII GGWCC 1 cut(s) 875
AxyI CCTNAGG 1 cut(s) 855
BaeGI GKGCMC 2 cut(s) 524, 1426
BanI GGYRCC 1 cut(s) 256
BbsI GAAGAC 2 cut(s) 374, 1439
Bbv12I GWGCWC 2 cut(s) 524, 1426
BbvI GCAGC 3 cut(s) 183, 433, 511
BccI CCATC 8 cut(s) 134, 385, 988, 1009, 1082, 1142, 1177, 1424
BceAI ACGGC 1 cut(s) 331
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BciT130I CCWGG 3 cut(s) 602, 882, 1230
BcnI CCSGG 1 cut(s) 112
BfaI CTAG 8 cut(s) 294, 443, 902, 906, 990, 1077, 1145, 1208
BfmI CTRYAG 1 cut(s) 506
BfuAI ACCTGC 1 cut(s) 499
BglII AGATCT 1 cut(s) 1287
BisI GCNGC 3 cut(s) 172, 447, 500
BlsI GCNGC 3 cut(s) 173, 448, 501
Bme1390I CCNGG 4 cut(s) 112, 602, 882, 1230
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 3 cut(s) 114, 344, 875
BmiI GGNNCC 2 cut(s) 10, 258
BmrFI CCNGG 4 cut(s) 112, 602, 882, 1230
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 7 cut(s) 477, 541, 777, 919, 1051, 1147, 1450
BmtI GCTAGC 1 cut(s) 446
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 2 cut(s) 374, 1439
BpmI CTGGAG 2 cut(s) 864, 1392
BpuEI CTTGAG 3 cut(s) 70, 196, 311
BpuMI CCSGG 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 601, 881
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 7 cut(s) 111, 307, 459, 857, 887, 1071, 1270
Bse1I ACTGG 4 cut(s) 442, 457, 892, 1375
Bse21I CCTNAGG 1 cut(s) 855
Bse3DI GCAATG 1 cut(s) 12
BseBI CCWGG 3 cut(s) 602, 882, 1230
BseDI CCNNGG 2 cut(s) 601, 881
BseGI GGATG 3 cut(s) 817, 999, 1416
BseLI CCNNNNNNNGG 7 cut(s) 111, 307, 459, 857, 887, 1071, 1270
BseMI GCAATG 1 cut(s) 12
BseMII CTCAG 2 cut(s) 363, 813
BseNI ACTGG 4 cut(s) 442, 457, 892, 1375
BseRI GAGGAG 2 cut(s) 314, 509
BseSI GKGCMC 2 cut(s) 524, 1426
BseXI GCAGC 3 cut(s) 183, 433, 511
BseYI CCCAGC 2 cut(s) 452, 1213
Bsh1236I CGCG 1 cut(s) 1162
BshFI GGCC 5 cut(s) 115, 346, 600, 1198, 1260
BshNI GGYRCC 1 cut(s) 256
BsiHKAI GWGCWC 2 cut(s) 524, 1426
BsiSI CCGG 5 cut(s) 112, 244, 1199, 1279, 1404
BslFI GGGAC 2 cut(s) 522, 898
BslI CCNNNNNNNGG 7 cut(s) 111, 307, 459, 857, 887, 1071, 1270
BsmFI GGGAC 2 cut(s) 522, 898
BsnI GGCC 5 cut(s) 115, 346, 600, 1198, 1260
Bsp1286I GDGCHC 2 cut(s) 524, 1426
Bsp143I GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
BspACI CCGC 1 cut(s) 417
BspANI GGCC 5 cut(s) 115, 346, 600, 1198, 1260
BspCNI CTCAG 2 cut(s) 364, 814
BspFNI CGCG 1 cut(s) 1162
BspLI GGNNCC 2 cut(s) 10, 258
BspMAI CTGCAG 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 499
BspOI GCTAGC 1 cut(s) 446
BspPI GGATC 5 cut(s) 471, 695, 842, 1248, 1291
BspT107I GGYRCC 1 cut(s) 256
BsrDI GCAATG 1 cut(s) 12
BsrI ACTGG 4 cut(s) 442, 457, 892, 1375
BssECI CCNNGG 2 cut(s) 601, 881
BssMI GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
Bst2UI CCWGG 3 cut(s) 602, 882, 1230
Bst4CI ACNGT 4 cut(s) 24, 724, 1319, 1438
Bst6I CTCTTC 3 cut(s) 218, 238, 723
BstAPI GCANNNNNTGC 2 cut(s) 487, 505
BstC8I GCNNGC 4 cut(s) 444, 641, 1021, 1036
BstDEI CTNAG 3 cut(s) 372, 822, 855
BstEII GGTNACC 1 cut(s) 1484
BstENI CCTNNNNNAGG 1 cut(s) 305
BstF5I GGATG 3 cut(s) 817, 999, 1416
BstFNI CGCG 1 cut(s) 1162
BstHHI GCGC 2 cut(s) 1119, 1162
BstKTI GATC 7 cut(s) 466, 658, 703, 850, 1243, 1290, 1299
BstMBI GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
BstMWI GCNNNNNNNGC 9 cut(s) 177, 487, 496, 505, 811, 867, 1123, 1204, 1421
BstNI CCWGG 3 cut(s) 602, 882, 1230
BstNSI RCATGY 1 cut(s) 643
BstPI GGTNACC 1 cut(s) 1484
BstSCI CCNGG 4 cut(s) 110, 600, 880, 1228
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 2 cut(s) 524, 1426
BstUI CGCG 1 cut(s) 1162
BstV1I GCAGC 3 cut(s) 183, 433, 511
BstV2I GAAGAC 2 cut(s) 374, 1439
BstX2I RGATCY 3 cut(s) 463, 1287, 1296
BstYI RGATCY 3 cut(s) 463, 1287, 1296
Bsu36I CCTNAGG 1 cut(s) 855
BsuRI GGCC 5 cut(s) 115, 346, 600, 1198, 1260
BtgZI GCGATG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 817, 999, 1416
BtsIMutI CAGTG 4 cut(s) 20, 435, 464, 1504
BveI ACCTGC 1 cut(s) 499
Cac8I GCNNGC 4 cut(s) 444, 641, 1021, 1036
CaiI CAGNNNCTG 2 cut(s) 505, 887
CfoI GCGC 2 cut(s) 1119, 1162
Cfr13I GGNCC 3 cut(s) 114, 344, 875
CseI GACGC 1 cut(s) 1291
Csp6I GTAC 2 cut(s) 229, 349
CviAII CATG 4 cut(s) 640, 715, 1123, 1516
CviQI GTAC 2 cut(s) 229, 349
DdeI CTNAG 3 cut(s) 372, 822, 855
DpnI GATC 7 cut(s) 465, 657, 702, 849, 1242, 1289, 1298
DpnII GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
DraI TTTAAA 1 cut(s) 202
Eam1104I CTCTTC 3 cut(s) 218, 238, 723
EarI CTCTTC 3 cut(s) 218, 238, 723
Eco32I GATATC 1 cut(s) 274
Eco47I GGWCC 1 cut(s) 875
Eco57I CTGAAG 2 cut(s) 199, 567
Eco81I CCTNAGG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 1484
EcoNI CCTNNNNNAGG 1 cut(s) 305
EcoO65I GGTNACC 1 cut(s) 1484
EcoRII CCWGG 3 cut(s) 600, 880, 1228
EcoRV GATATC 1 cut(s) 274
FaeI CATG 4 cut(s) 643, 718, 1126, 1519
FalI AAGNNNNNCTT 2 cut(s) 1440, 1472
FaqI GGGAC 2 cut(s) 522, 898
FatI CATG 4 cut(s) 639, 714, 1122, 1515
FblI GTMKAC 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 172, 447, 500
FokI GGATG 3 cut(s) 804, 1006, 1403
Fsp4HI GCNGC 3 cut(s) 172, 447, 500
FspBI CTAG 8 cut(s) 294, 443, 902, 906, 990, 1077, 1145, 1208
GlaI GCGC 2 cut(s) 1118, 1161
GluI GCNGC 3 cut(s) 172, 447, 500
GsaI CCCAGC 2 cut(s) 456, 1217
GsuI CTGGAG 2 cut(s) 864, 1392
HaeIII GGCC 5 cut(s) 115, 346, 600, 1198, 1260
HapII CCGG 5 cut(s) 112, 244, 1199, 1279, 1404
HgaI GACGC 1 cut(s) 1291
HhaI GCGC 2 cut(s) 1119, 1162
Hin1II CATG 4 cut(s) 643, 718, 1126, 1519
Hin6I GCGC 2 cut(s) 1117, 1160
HinP1I GCGC 2 cut(s) 1117, 1160
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HindIII AAGCTT 1 cut(s) 836
HinfI GANTC 5 cut(s) 355, 428, 673, 679, 1138
HpaII CCGG 5 cut(s) 112, 244, 1199, 1279, 1404
HphI GGTGA 3 cut(s) 617, 703, 992
Hpy166II GTNNAC 6 cut(s) 98, 193, 522, 959, 1424, 1522
Hpy188I TCNGA 9 cut(s) 76, 93, 433, 475, 547, 672, 678, 1014, 1509
Hpy188III TCNNGA 4 cut(s) 328, 821, 1001, 1180
Hpy8I GTNNAC 6 cut(s) 98, 193, 522, 959, 1424, 1522
HpyAV CCTTC 4 cut(s) 161, 370, 629, 1422
HpyCH4III ACNGT 4 cut(s) 24, 724, 1319, 1438
HpyCH4IV ACGT 2 cut(s) 746, 1225
HpyCH4V TGCA 6 cut(s) 490, 508, 522, 1038, 1395, 1424
HpyF10VI GCNNNNNNNGC 9 cut(s) 177, 487, 496, 505, 811, 867, 1123, 1204, 1421
HpyF3I CTNAG 3 cut(s) 372, 822, 855
HpySE526I ACGT 2 cut(s) 746, 1225
Hsp92II CATG 4 cut(s) 643, 718, 1126, 1519
HspAI GCGC 2 cut(s) 1117, 1160
Kzo9I GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
LmnI GCTCC 4 cut(s) 454, 496, 772, 1373
Lsp1109I GCAGC 3 cut(s) 183, 433, 511
LweI GCATC 7 cut(s) 477, 541, 777, 919, 1051, 1147, 1450
MaeI CTAG 8 cut(s) 294, 443, 902, 906, 990, 1077, 1145, 1208
MaeII ACGT 2 cut(s) 746, 1225
MaeIII GTNAC 7 cut(s) 605, 659, 709, 742, 1221, 1438, 1484
MalI GATC 7 cut(s) 465, 657, 702, 849, 1242, 1289, 1298
MboI GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
MflI RGATCY 3 cut(s) 463, 1287, 1296
MhlI GDGCHC 2 cut(s) 524, 1426
MlyI GAGTC 2 cut(s) 349, 437
MmeI TCCRAC 2 cut(s) 54, 71
MroXI GAANNNNTTC 1 cut(s) 963
MseI TTAA 7 cut(s) 201, 363, 384, 423, 573, 1173, 1293
MslI CAYNNNNRTG 1 cut(s) 716
MspI CCGG 5 cut(s) 112, 244, 1199, 1279, 1404
MspR9I CCNGG 4 cut(s) 112, 602, 882, 1230
MvaI CCWGG 3 cut(s) 602, 882, 1230
MvnI CGCG 1 cut(s) 1162
MwoI GCNNNNNNNGC 9 cut(s) 177, 487, 496, 505, 811, 867, 1123, 1204, 1421
NciI CCSGG 1 cut(s) 112
NdeII GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
NheI GCTAGC 1 cut(s) 442
NlaIII CATG 4 cut(s) 643, 718, 1126, 1519
NlaIV GGNNCC 2 cut(s) 10, 258
NmeAIII GCCGAG 1 cut(s) 1330
NmuCI GTSAC 2 cut(s) 605, 709
NspI RCATGY 1 cut(s) 643
PaeI GCATGC 1 cut(s) 643
PcsI WCGNNNNNNNCGW 4 cut(s) 309, 1031, 1231, 1240
PdmI GAANNNNTTC 1 cut(s) 963
PfeI GAWTC 3 cut(s) 673, 679, 1138
PflMI CCANNNNNTGG 2 cut(s) 459, 887
PfoI TCCNGGA 1 cut(s) 1228
PkrI GCNGC 3 cut(s) 173, 448, 501
PleI GAGTC 2 cut(s) 349, 436
PpsI GAGTC 2 cut(s) 349, 436
Psp6I CCWGG 3 cut(s) 600, 880, 1228
PspEI GGTNACC 1 cut(s) 1484
PspFI CCCAGC 2 cut(s) 452, 1213
PspGI CCWGG 3 cut(s) 600, 880, 1228
PspN4I GGNNCC 2 cut(s) 10, 258
PspPI GGNCC 3 cut(s) 114, 344, 875
PstI CTGCAG 1 cut(s) 510
PstNI CAGNNNCTG 2 cut(s) 505, 887
PsuI RGATCY 3 cut(s) 463, 1287, 1296
RsaI GTAC 2 cut(s) 230, 350
RsaNI GTAC 2 cut(s) 229, 349
RseI CAYNNNNRTG 1 cut(s) 716
SalI GTCGAC 1 cut(s) 191
SaqAI TTAA 7 cut(s) 201, 363, 384, 423, 573, 1173, 1293
SatI GCNGC 3 cut(s) 172, 447, 500
Sau3AI GATC 7 cut(s) 463, 655, 700, 847, 1240, 1287, 1296
Sau96I GGNCC 3 cut(s) 114, 344, 875
SchI GAGTC 2 cut(s) 349, 437
ScrFI CCNGG 4 cut(s) 112, 602, 882, 1230
SduI GDGCHC 2 cut(s) 524, 1426
SfaNI GCATC 7 cut(s) 477, 541, 777, 919, 1051, 1147, 1450
SfcI CTRYAG 1 cut(s) 506
SinI GGWCC 1 cut(s) 875
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 3 cut(s) 85, 175, 326
SmoI CTYRAG 3 cut(s) 85, 175, 326
SphI GCATGC 1 cut(s) 643
SsiI CCGC 1 cut(s) 417
SspMI CTAG 8 cut(s) 294, 443, 902, 906, 990, 1077, 1145, 1208
StyD4I CCNGG 4 cut(s) 110, 600, 880, 1228
TaaI ACNGT 4 cut(s) 24, 724, 1319, 1438
TaiI ACGT 2 cut(s) 749, 1228
TaqI TCGA 5 cut(s) 192, 303, 353, 1000, 1025
TatI WGTACW 1 cut(s) 228
TfiI GAWTC 3 cut(s) 673, 679, 1138
Tru1I TTAA 7 cut(s) 201, 363, 384, 423, 573, 1173, 1293
Tru9I TTAA 7 cut(s) 201, 363, 384, 423, 573, 1173, 1293
TscAI CASTG 4 cut(s) 27, 442, 464, 1504
TseFI GTSAC 2 cut(s) 605, 709
TseI GCWGC 3 cut(s) 171, 446, 499
Tsp45I GTSAC 2 cut(s) 605, 709
TspDTI ATGAA 4 cut(s) 806, 928, 1068, 1328
TspGWI ACGGA 3 cut(s) 211, 1409, 1457
TspRI CASTG 4 cut(s) 27, 442, 464, 1504
Van91I CCANNNNNTGG 2 cut(s) 459, 887
VneI GTGCAC 2 cut(s) 520, 1422
VpaK11BI GGWCC 1 cut(s) 875
XagI CCTNNNNNAGG 1 cut(s) 305
XapI RAATTY 2 cut(s) 827, 1363
XceI RCATGY 1 cut(s) 643
XcmI CCANNNNNNNNNTGG 1 cut(s) 721
XmiI GTMKAC 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 8 cut(s) 294, 443, 902, 906, 990, 1077, 1145, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.