Rroxscaffold_2G00099040

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
20521780 .. 20525375
3596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00099040.1

Sequence Viewer

Length: 1278 bp
ATGGCGCCAGAACCCGAAGATATCAAGGACGAGAAGAACCCTAGACCCCTCGATGAGGACGACATCGCCCTTCTCAAGACCTATGGATTAGGGCCTTACTCTACTCATATTAAGAAGGCTGAGAAGGAAATTAAGGAGATGGCTAAAAATGTCAATGATTTATGTGGTATTAAGGAGTCTGATACTGGTCTAGCTGCTCCCAGCCAGTGGGATCTTGTTTCGGATAAGCAGATGATGCAGGAGGAGCAACCTCTGCAGGTTGCGAGGTGCACCAAGATTATCAGTCCCAATTCTGAAGATGCTAAATACGTCATCAACGTTAAGCAAATTGCAAAGTTTGTAGTCGGCCTGGGTGACAAGGTTTCCCCAACAGATATAGAAGAAGGCATGCGCGTCGGGGTTGATCGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACAGTGGAAGAGAAGCCAGATGTGACATATAACGATGTCGGTGGATGTAAGGAGCAGATTGAGAAGATGCGAGAAGTTGTTGAGCTACCCATGCTTCACCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTCTGTTATGGTCCTCCAGGGACTGGTAAAACACTTCTAGCTAGAGCTGTGGCTAACAGAACTGATGCTTGTTTCATTCGTGTTATTGGGAGTGAACTTGTTCAGAAGTATGTTGGTGAGGGGGCTAGGATGGTGCGAGAGCTATTTCAGATGGCGCGCTCAAAAAAGGCGTGTATTGTGTTTTTTGATGAAGTTGATGCCATAGGAGGGGCTAGATTTGATGATGGTGTGGGTGGAGACAATGAGGTCCAGCGCACTATGCTTGAAATTGTGAATCAGCTAGATGGTTTTGATGCGCGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACACTAGACCCAGCATTGTTACGTCCTGGACGATTGGATCGTAAGGTTGAGTTTGGCCTCCCAGATATGGAGAGCAGGACGCAGATATTTAAGATCCATACACGAACAATGAATTGTGAAAGAGATGTTAGGTTTGAACTTCTCGCTCGGCTGTGCCCAAATTCAACTGGAGCTGATATAAGAAGTGTATGCACAGAAGCCGGAATGTATGCCATTCGTGCACGAAGGAAGACAGTAACCGAAAAGGACTTCCTTGATGCTGTGAATAAGGTCATTAAGGGTTACCAGAAGTTCAGCGCTACTCCCAAATACATGGTTTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.57

Weight (kDa)

6.14

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_PRS7 PF21236 78 - 146 4.4e-39 26S proteasome regulatory subunit 7, OB domain
AAA PF00004 204 - 337 2.4e-40 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 359 - 402 1.9e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 857
Acc36I ACCTGC 1 cut(s) 247
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 2 cut(s) 207, 635
AccII CGCG 3 cut(s) 393, 769, 910
AclI AACGTT 1 cut(s) 318
AclWI GGATC 5 cut(s) 219, 443, 590, 996, 1039
AcsI RAATTY 2 cut(s) 575, 1111
AcuI CTGAAG 1 cut(s) 315
AcyI GRCGYC 1 cut(s) 5
AfeI AGCGCT 1 cut(s) 1249
AfiI CCNNNNNNNGG 6 cut(s) 55, 207, 605, 635, 819, 1018
AgsI TTSAA 3 cut(s) 878, 1088, 1116
AjnI CCWGG 3 cut(s) 348, 628, 976
AluBI AGCT 8 cut(s) 194, 553, 586, 653, 659, 754, 892, 1124
AluI AGCT 8 cut(s) 194, 553, 586, 653, 659, 754, 892, 1124
Alw21I GWGCWC 2 cut(s) 272, 1174
Alw26I GTCTC 1 cut(s) 843
Alw44I GTGCAC 2 cut(s) 268, 1170
AlwI GGATC 5 cut(s) 219, 443, 590, 996, 1039
AlwNI CAGNNNCTG 1 cut(s) 635
Aor51HI AGCGCT 1 cut(s) 1249
AoxI GGCC 4 cut(s) 92, 346, 944, 1006
ApaLI GTGCAC 2 cut(s) 268, 1170
ApeKI GCWGC 1 cut(s) 194
ApoI RAATTY 2 cut(s) 575, 1111
Asp700I GAANNNNTTC 1 cut(s) 711
AspLEI GCGC 7 cut(s) 7, 393, 769, 771, 867, 910, 1250
AspS9I GGNCC 3 cut(s) 92, 623, 859
AsuHPI GGTGA 3 cut(s) 365, 557, 740
AvaII GGWCC 2 cut(s) 623, 859
AxyI CCTNAGG 1 cut(s) 603
BaeGI GKGCMC 3 cut(s) 272, 1109, 1174
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 2 cut(s) 272, 1174
BbvI GCAGC 1 cut(s) 181
BccI CCATC 6 cut(s) 133, 736, 757, 830, 890, 925
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 3 cut(s) 350, 630, 978
BcoDI GTCTC 1 cut(s) 843
BfaI CTAG 8 cut(s) 42, 191, 650, 654, 738, 825, 893, 956
BfmI CTRYAG 1 cut(s) 254
BfoI RGCGCY 2 cut(s) 8, 1251
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 1 cut(s) 195
BlsI GCNGC 1 cut(s) 196
Bme1390I CCNGG 3 cut(s) 350, 630, 978
Bme18I GGWCC 2 cut(s) 623, 859
BmgT120I GGNCC 3 cut(s) 92, 623, 859
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 3 cut(s) 350, 630, 978
BmsI GCATC 7 cut(s) 225, 289, 525, 667, 799, 895, 1198
BpiI GAAGAC 1 cut(s) 1187
BpmI CTGGAG 2 cut(s) 612, 1140
BpuEI CTTGAG 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 349, 629
Bsc4I CCNNNNNNNGG 6 cut(s) 55, 207, 605, 635, 819, 1018
Bse1I ACTGG 4 cut(s) 190, 205, 640, 1123
Bse21I CCTNAGG 1 cut(s) 603
BseBI CCWGG 3 cut(s) 350, 630, 978
BseDI CCNNGG 2 cut(s) 349, 629
BseGI GGATG 2 cut(s) 518, 747
BseLI CCNNNNNNNGG 6 cut(s) 55, 207, 605, 635, 819, 1018
BseMII CTCAG 2 cut(s) 111, 561
BseNI ACTGG 4 cut(s) 190, 205, 640, 1123
BsePI GCGCGC 1 cut(s) 767
BseRI GAGGAG 1 cut(s) 257
BseSI GKGCMC 3 cut(s) 272, 1109, 1174
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 2 cut(s) 200, 961
Bsh1236I CGCG 3 cut(s) 393, 769, 910
BshFI GGCC 4 cut(s) 94, 348, 946, 1008
BshNI GGYRCC 1 cut(s) 4
BsiHKAI GWGCWC 2 cut(s) 272, 1174
BsiSI CCGG 1 cut(s) 1152
BslFI GGGAC 2 cut(s) 270, 646
BslI CCNNNNNNNGG 6 cut(s) 55, 207, 605, 635, 819, 1018
BsmAI GTCTC 1 cut(s) 843
BsmFI GGGAC 2 cut(s) 270, 646
BsnI GGCC 4 cut(s) 94, 348, 946, 1008
Bsp1286I GDGCHC 3 cut(s) 272, 1109, 1174
Bsp143I GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
BspANI GGCC 4 cut(s) 94, 348, 946, 1008
BspCNI CTCAG 2 cut(s) 112, 562
BspFNI CGCG 3 cut(s) 393, 769, 910
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 5 cut(s) 219, 443, 590, 996, 1039
BspT107I GGYRCC 1 cut(s) 4
BsrI ACTGG 4 cut(s) 190, 205, 640, 1123
BssECI CCNNGG 2 cut(s) 349, 629
BssHII GCGCGC 1 cut(s) 767
BssMI GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 3 cut(s) 350, 630, 978
Bst4CI ACNGT 2 cut(s) 472, 1186
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 2 cut(s) 235, 253
BstC8I GCNNGC 2 cut(s) 389, 769
BstDEI CTNAG 3 cut(s) 120, 570, 603
BstEII GGTNACC 1 cut(s) 1232
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 2 cut(s) 518, 747
BstFNI CGCG 3 cut(s) 393, 769, 910
BstH2I RGCGCY 2 cut(s) 8, 1251
BstHHI GCGC 7 cut(s) 7, 393, 769, 771, 867, 910, 1250
BstKTI GATC 6 cut(s) 214, 406, 451, 598, 991, 1047
BstMAI GTCTC 1 cut(s) 843
BstMBI GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
BstMWI GCNNNNNNNGC 6 cut(s) 235, 244, 253, 559, 871, 1169
BstNI CCWGG 3 cut(s) 350, 630, 978
BstNSI RCATGY 1 cut(s) 391
BstPI GGTNACC 1 cut(s) 1232
BstSCI CCNGG 3 cut(s) 348, 628, 976
BstSFI CTRYAG 1 cut(s) 254
BstSLI GKGCMC 3 cut(s) 272, 1109, 1174
BstUI CGCG 3 cut(s) 393, 769, 910
BstV1I GCAGC 1 cut(s) 181
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 2 cut(s) 211, 1044
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 2 cut(s) 211, 1044
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 4 cut(s) 94, 348, 946, 1008
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 2 cut(s) 518, 747
BtsIMutI CAGTG 2 cut(s) 212, 477
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 389, 769
CaiI CAGNNNCTG 1 cut(s) 635
CfoI GCGC 7 cut(s) 7, 393, 769, 771, 867, 910, 1250
Cfr13I GGNCC 3 cut(s) 92, 623, 859
CseI GACGC 2 cut(s) 382, 1039
CviAII CATG 4 cut(s) 388, 463, 559, 1264
DdeI CTNAG 3 cut(s) 120, 570, 603
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 213, 405, 450, 597, 990, 1046
DpnII GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
DrdI GACNNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 857
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco147I AGGCCT 1 cut(s) 946
Eco32I GATATC 1 cut(s) 22
Eco47I GGWCC 2 cut(s) 623, 859
Eco47III AGCGCT 1 cut(s) 1249
Eco57I CTGAAG 1 cut(s) 315
Eco81I CCTNAGG 1 cut(s) 603
Eco91I GGTNACC 1 cut(s) 1232
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 1232
EcoRII CCWGG 3 cut(s) 348, 628, 976
EcoRV GATATC 1 cut(s) 22
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 4 cut(s) 391, 466, 562, 1267
FaqI GGGAC 2 cut(s) 270, 646
FatI CATG 4 cut(s) 387, 462, 558, 1263
Fnu4HI GCNGC 1 cut(s) 195
FokI GGATG 2 cut(s) 525, 754
Fsp4HI GCNGC 1 cut(s) 195
FspBI CTAG 8 cut(s) 42, 191, 650, 654, 738, 825, 893, 956
GlaI GCGC 7 cut(s) 6, 392, 768, 770, 866, 909, 1249
GluI GCNGC 1 cut(s) 195
GsaI CCCAGC 2 cut(s) 204, 965
GsuI CTGGAG 2 cut(s) 612, 1140
HaeII RGCGCY 2 cut(s) 8, 1251
HaeIII GGCC 4 cut(s) 94, 348, 946, 1008
HapII CCGG 1 cut(s) 1152
HgaI GACGC 2 cut(s) 382, 1039
HhaI GCGC 7 cut(s) 7, 393, 769, 771, 867, 910, 1250
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 391, 466, 562, 1267
Hin6I GCGC 7 cut(s) 5, 391, 767, 769, 865, 908, 1248
HinP1I GCGC 7 cut(s) 5, 391, 767, 769, 865, 908, 1248
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 4 cut(s) 176, 421, 427, 886
HpaII CCGG 1 cut(s) 1152
HphI GGTGA 3 cut(s) 365, 557, 740
Hpy166II GTNNAC 4 cut(s) 270, 707, 1172, 1270
Hpy188I TCNGA 7 cut(s) 181, 223, 295, 420, 426, 717, 762
Hpy188III TCNNGA 2 cut(s) 76, 928
Hpy8I GTNNAC 4 cut(s) 270, 707, 1172, 1270
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 5 cut(s) 80, 109, 118, 377, 1170
HpyCH4III ACNGT 2 cut(s) 472, 1186
HpyCH4IV ACGT 3 cut(s) 309, 318, 973
HpyCH4V TGCA 6 cut(s) 238, 256, 270, 332, 1143, 1172
HpyF10VI GCNNNNNNNGC 6 cut(s) 235, 244, 253, 559, 871, 1169
HpyF3I CTNAG 3 cut(s) 120, 570, 603
HpySE526I ACGT 3 cut(s) 309, 318, 973
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 391, 466, 562, 1267
HspAI GCGC 7 cut(s) 5, 391, 767, 769, 865, 908, 1248
KasI GGCGCC 1 cut(s) 4
Kzo9I GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
LmnI GCTCC 4 cut(s) 202, 244, 520, 1121
Lsp1109I GCAGC 1 cut(s) 181
LweI GCATC 7 cut(s) 225, 289, 525, 667, 799, 895, 1198
MaeI CTAG 8 cut(s) 42, 191, 650, 654, 738, 825, 893, 956
MaeII ACGT 3 cut(s) 309, 318, 973
MaeIII GTNAC 6 cut(s) 353, 457, 490, 969, 1186, 1232
MalI GATC 6 cut(s) 213, 405, 450, 597, 990, 1046
MboI GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
MboII GAAGA 7 cut(s) 29, 46, 308, 392, 488, 544, 1192
MflI RGATCY 2 cut(s) 211, 1044
MhlI GDGCHC 3 cut(s) 272, 1109, 1174
MluCI AATT 9 cut(s) 129, 289, 327, 444, 575, 591, 879, 1063, 1111
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 185
MroXI GAANNNNTTC 1 cut(s) 711
MseI TTAA 6 cut(s) 111, 132, 171, 321, 1041, 1227
MspI CCGG 1 cut(s) 1152
MspR9I CCNGG 3 cut(s) 350, 630, 978
MvaI CCWGG 3 cut(s) 350, 630, 978
MvnI CGCG 3 cut(s) 393, 769, 910
MwoI GCNNNNNNNGC 6 cut(s) 235, 244, 253, 559, 871, 1169
NarI GGCGCC 1 cut(s) 5
NdeII GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
NlaIII CATG 4 cut(s) 391, 466, 562, 1267
NlaIV GGNNCC 1 cut(s) 6
NmeAIII GCCGAG 1 cut(s) 1078
NmuCI GTSAC 3 cut(s) 353, 457, 490
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PauI GCGCGC 1 cut(s) 767
PceI AGGCCT 1 cut(s) 946
PcsI WCGNNNNNNNCGW 4 cut(s) 57, 315, 979, 988
PdmI GAANNNNTTC 1 cut(s) 711
PfeI GAWTC 3 cut(s) 421, 427, 886
PflMI CCANNNNNTGG 2 cut(s) 207, 635
PfoI TCCNGGA 1 cut(s) 976
PkrI GCNGC 1 cut(s) 196
PleI GAGTC 1 cut(s) 184
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 184
Psp1406I AACGTT 1 cut(s) 318
Psp6I CCWGG 3 cut(s) 348, 628, 976
PspEI GGTNACC 1 cut(s) 1232
PspFI CCCAGC 2 cut(s) 200, 961
PspGI CCWGG 3 cut(s) 348, 628, 976
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 92, 623, 859
PstI CTGCAG 1 cut(s) 258
PstNI CAGNNNCTG 1 cut(s) 635
PsuI RGATCY 2 cut(s) 211, 1044
PteI GCGCGC 1 cut(s) 767
SaqAI TTAA 6 cut(s) 111, 132, 171, 321, 1041, 1227
SatI GCNGC 1 cut(s) 195
Sau3AI GATC 6 cut(s) 211, 403, 448, 595, 988, 1044
Sau96I GGNCC 3 cut(s) 92, 623, 859
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 3 cut(s) 350, 630, 978
SduI GDGCHC 3 cut(s) 272, 1109, 1174
SfaNI GCATC 7 cut(s) 225, 289, 525, 667, 799, 895, 1198
SfcI CTRYAG 1 cut(s) 254
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 623, 859
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 391
Sse9I AATT 9 cut(s) 129, 289, 327, 444, 575, 591, 879, 1063, 1111
SseBI AGGCCT 1 cut(s) 946
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 8 cut(s) 42, 191, 650, 654, 738, 825, 893, 956
StuI AGGCCT 1 cut(s) 946
StyD4I CCNGG 3 cut(s) 348, 628, 976
TaaI ACNGT 2 cut(s) 472, 1186
TaiI ACGT 3 cut(s) 312, 321, 976
TaqI TCGA 2 cut(s) 51, 406
TasI AATT 9 cut(s) 129, 289, 327, 444, 575, 591, 879, 1063, 1111
TfiI GAWTC 3 cut(s) 421, 427, 886
Tru1I TTAA 6 cut(s) 111, 132, 171, 321, 1041, 1227
Tru9I TTAA 6 cut(s) 111, 132, 171, 321, 1041, 1227
TscAI CASTG 2 cut(s) 212, 477
TseFI GTSAC 3 cut(s) 353, 457, 490
TseI GCWGC 1 cut(s) 194
Tsp45I GTSAC 3 cut(s) 353, 457, 490
TspDTI ATGAA 3 cut(s) 676, 816, 1076
TspRI CASTG 2 cut(s) 212, 477
Van91I CCANNNNNTGG 2 cut(s) 207, 635
VneI GTGCAC 2 cut(s) 268, 1170
VpaK11BI GGWCC 2 cut(s) 623, 859
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 2 cut(s) 575, 1111
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 711
XspI CTAG 8 cut(s) 42, 191, 650, 654, 738, 825, 893, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.