Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003762

Physical Location & Seq

Genomic Coordinates Forward (+)

69991061 .. 69995097

Gene Structure 4037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG484300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCACCGGAGCCCGAAGATATCAAGGACGAGAAGAACCCTAGACCCCTCGATGAGGACGACATCGCCCTCCTCAAGACCTATGGATTAGGGCCTTACTCTACTCATATTAAGAAGGCTGAGAAGGAAATTAAGGAGATGGCTAAAAAGGTCAATGATTTATGTGGTATTAAGGAGTCTGATACTGGTCTAGCAGCTCCCAGCCAGTGGGATCTTGTTTCGGATAAGCAGATGATGCAGGAGGAGCAACCTCTGCAGGTTGCGAGGTGTACCAAGATTATCAGTCCCAATTCTGAAGATGCTAAATATGTCATCAATGTTAAGCAAATTGCAAAGTTTGTAGTCGGCCTGGGTGACAAGGTTTCCCCAACAGATATAGAAGAAGGCATGCGTGTCGGGGTTGATCGAAACAAATATCAGATTCAGATTCCTTTGCCTCCGAAAATTGATCCAAGTGTGACCATGATGACGGTGGAAGAGAAGCCAGATGTGACGTATAACGATGTCGGTGGATGTAAGGAGCAGATTGAGAAGATGCGAGAAGTTGTTGAGCTACCCATGCTTCACCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTCTGTTATGGTCCTCCAGGGACTGGTAAAACACTTCTAGCTAGAGCTGTGGCTAACAGAACTGATGCTTGTTTCATTCGTGTTATTGGGAGTGAACTTGTTCAGAAGTATGTTGGTGAGGGGGCTAGGATGGTGCGAGAGCTATTTCAGATGGCGCGCTCAAAAAAGGCATGTATTGTGTTTTTTGATGAAGTTGATGCCATAGGAGGGGCTAGATTTGATGATGGTGTGGGTGGAGACAATGAGGTCCAGCGCACTATGCTTGAAATTGTGAATCAGCTAGATGGTTTTGATGCACGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACACTAGACCCAGCATTGTTACGTCCTGGACGATTGGATCGTAAGGTTGAGTTTGGCCTCCCAGATATGGAGAGCAGGACGCAGATATTTAAGATCCATACACGAACAATGAATTGTGAAAGAGATGTTAGGTTTGAACTTCTCGCTCGGCTGTGCCCAAATTCAACTGGTAAGTCCTTTCTATTGCTATTGTTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

383

Amino Acids

42.78

Weight (kDa)

5.59

Isoelectric Point (pI)

33.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_PRS7	PF21236	78 - 146	3.7e-39	26S proteasome regulatory subunit 7, OB domain
AAA	PF00004	204 - 337	2e-40	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53750 AT1G53780 AT1G53780 AT1G53780 AT1G53780
fragaria_vesca	FvH4_3g41880 FvH4_3g42030 FvH4_6g36060
malus_domestica	MD09G1171700.v1.1 MD17G1155300.v1.1
prunus_persica	Prupe.3G030100_v2.0.a1
pyrus_communis	pycom09g08900
rosa_chinensis	RchiOBHm_Chr2g0148151 RchiOBHm_Chr5g0074901 RchiOBHm_Chr5g0075071
rosa_laevigata	RLG00000020321 RLG00000036526
rosa_multiflora	Rmu_sc0001516.1_g000100 Rmu_sc0006984.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006550 Rroxscaffold_2G00099040
rosa_rugosa	Rorug02G0404000 Rorug02G0417600 Rorug05G0435900
rosa_samantha	Rh2AG462600 Rh2BG475600 Rh2CG449400 Rh2DG484300 Rh5AG493400 Rh5BG514900 Rh5CG538500 Rh5DG527300
rosa_wichuraiana	Rw2G037710 Rw5G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	857
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	207, 635
AccII	CGCG	1 cut(s)	769
AclWI	GGATC	5 cut(s)	219, 443, 590, 996, 1039
AcsI	RAATTY	2 cut(s)	575, 1111
AcuI	CTGAAG	1 cut(s)	315
AcvI	CACGTG	1 cut(s)	911
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	6 cut(s)	55, 207, 605, 635, 819, 1018
AgsI	TTSAA	3 cut(s)	878, 1088, 1116
AjnI	CCWGG	3 cut(s)	348, 628, 976
AluBI	AGCT	7 cut(s)	197, 553, 586, 653, 659, 754, 892
AluI	AGCT	7 cut(s)	197, 553, 586, 653, 659, 754, 892
Alw26I	GTCTC	1 cut(s)	843
AlwI	GGATC	5 cut(s)	219, 443, 590, 996, 1039
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	4 cut(s)	92, 346, 944, 1006
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	575, 1111
Asp700I	GAANNNNTTC	1 cut(s)	711
AspLEI	GCGC	3 cut(s)	769, 771, 867
AspS9I	GGNCC	3 cut(s)	92, 623, 859
AsuHPI	GGTGA	3 cut(s)	365, 557, 740
AvaII	GGWCC	2 cut(s)	623, 859
AxyI	CCTNAGG	1 cut(s)	603
BaeGI	GKGCMC	1 cut(s)	1109
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	15
BbrPI	CACGTG	1 cut(s)	911
BbvI	GCAGC	1 cut(s)	206
BccI	CCATC	6 cut(s)	133, 736, 757, 830, 890, 925
BcgI	CGANNNNNNTGC	2 cut(s)	376, 410
BciT130I	CCWGG	3 cut(s)	350, 630, 978
BcoDI	GTCTC	1 cut(s)	843
BfaI	CTAG	8 cut(s)	42, 191, 650, 654, 738, 825, 893, 956
BfmI	CTRYAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	247
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	350, 630, 978
Bme18I	GGWCC	2 cut(s)	623, 859
BmgT120I	GGNCC	3 cut(s)	92, 623, 859
BmiI	GGNNCC	2 cut(s)	6, 12
BmrFI	CCNGG	3 cut(s)	350, 630, 978
BmsI	GCATC	6 cut(s)	225, 289, 525, 667, 799, 895
BpmI	CTGGAG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	59
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	349, 629
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	6 cut(s)	55, 207, 605, 635, 819, 1018
Bse1I	ACTGG	4 cut(s)	190, 205, 640, 1123
Bse21I	CCTNAGG	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	350, 630, 978
BseDI	CCNNGG	2 cut(s)	349, 629
BseGI	GGATG	2 cut(s)	518, 747
BseLI	CCNNNNNNNGG	6 cut(s)	55, 207, 605, 635, 819, 1018
BseMII	CTCAG	2 cut(s)	111, 561
BseNI	ACTGG	4 cut(s)	190, 205, 640, 1123
BsePI	GCGCGC	1 cut(s)	767
BseRI	GAGGAG	2 cut(s)	62, 257
BseSI	GKGCMC	1 cut(s)	1109
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	2 cut(s)	200, 961
Bsh1236I	CGCG	1 cut(s)	769
BshFI	GGCC	4 cut(s)	94, 348, 946, 1008
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	270, 646
BslI	CCNNNNNNNGG	6 cut(s)	55, 207, 605, 635, 819, 1018
BsmAI	GTCTC	1 cut(s)	843
BsmFI	GGGAC	2 cut(s)	270, 646
BsnI	GGCC	4 cut(s)	94, 348, 946, 1008
Bsp1286I	GDGCHC	2 cut(s)	15, 1109
Bsp143I	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
BspANI	GGCC	4 cut(s)	94, 348, 946, 1008
BspCNI	CTCAG	2 cut(s)	112, 562
BspFNI	CGCG	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	6, 12
BspMAI	CTGCAG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	5 cut(s)	219, 443, 590, 996, 1039
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	4 cut(s)	190, 205, 640, 1123
BssECI	CCNNGG	2 cut(s)	349, 629
BssHII	GCGCGC	1 cut(s)	767
BssMI	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
Bst2UI	CCWGG	3 cut(s)	350, 630, 978
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	1 cut(s)	471
BstAPI	GCANNNNNTGC	2 cut(s)	235, 253
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	2 cut(s)	389, 769
BstDEI	CTNAG	3 cut(s)	120, 570, 603
BstENI	CCTNNNNNAGG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	518, 747
BstFNI	CGCG	1 cut(s)	769
BstHHI	GCGC	3 cut(s)	769, 771, 867
BstKTI	GATC	6 cut(s)	214, 406, 451, 598, 991, 1047
BstMAI	GTCTC	1 cut(s)	843
BstMBI	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
BstMWI	GCNNNNNNNGC	5 cut(s)	235, 244, 253, 559, 871
BstNI	CCWGG	3 cut(s)	350, 630, 978
BstNSI	RCATGY	2 cut(s)	391, 786
BstSCI	CCNGG	3 cut(s)	348, 628, 976
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	1 cut(s)	1109
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	1 cut(s)	206
BstX2I	RGATCY	2 cut(s)	211, 1044
BstYI	RGATCY	2 cut(s)	211, 1044
Bsu36I	CCTNAGG	1 cut(s)	603
BsuRI	GGCC	4 cut(s)	94, 348, 946, 1008
BtgZI	GCGATG	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	518, 747
BtsIMutI	CAGTG	1 cut(s)	212
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	389, 769
CaiI	CAGNNNCTG	1 cut(s)	635
CfoI	GCGC	3 cut(s)	769, 771, 867
Cfr13I	GGNCC	3 cut(s)	92, 623, 859
CseI	GACGC	1 cut(s)	1039
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	4 cut(s)	388, 463, 559, 783
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	3 cut(s)	120, 570, 603
DpnI	GATC	6 cut(s)	213, 405, 450, 597, 990, 1046
DpnII	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
DrdI	GACNNNNNNGTC	1 cut(s)	857
DseDI	GACNNNNNNGTC	1 cut(s)	857
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco147I	AGGCCT	1 cut(s)	946
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	623, 859
Eco57I	CTGAAG	1 cut(s)	315
Eco72I	CACGTG	1 cut(s)	911
Eco81I	CCTNAGG	1 cut(s)	603
EcoNI	CCTNNNNNAGG	1 cut(s)	53
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	3 cut(s)	348, 628, 976
EcoRV	GATATC	1 cut(s)	22
EcoT38I	GRGCYC	1 cut(s)	15
FaeI	CATG	4 cut(s)	391, 466, 562, 786
FaqI	GGGAC	2 cut(s)	270, 646
FatI	CATG	4 cut(s)	387, 462, 558, 782
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	525, 754
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	8 cut(s)	42, 191, 650, 654, 738, 825, 893, 956
GlaI	GCGC	3 cut(s)	768, 770, 866
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	2 cut(s)	204, 965
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	94, 348, 946, 1008
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	1039
HhaI	GCGC	3 cut(s)	769, 771, 867
Hin1II	CATG	4 cut(s)	391, 466, 562, 786
Hin6I	GCGC	3 cut(s)	767, 769, 865
HinP1I	GCGC	3 cut(s)	767, 769, 865
HindIII	AAGCTT	1 cut(s)	584
HinfI	GANTC	4 cut(s)	176, 421, 427, 886
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	3 cut(s)	365, 557, 740
Hpy166II	GTNNAC	2 cut(s)	270, 707
Hpy188I	TCNGA	8 cut(s)	181, 223, 295, 420, 426, 441, 717, 762
Hpy188III	TCNNGA	2 cut(s)	76, 928
Hpy8I	GTNNAC	2 cut(s)	270, 707
HpyAV	CCTTC	3 cut(s)	109, 118, 377
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4IV	ACGT	3 cut(s)	494, 910, 973
HpyCH4V	TGCA	4 cut(s)	238, 256, 332, 908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	235, 244, 253, 559, 871
HpyF3I	CTNAG	3 cut(s)	120, 570, 603
HpySE526I	ACGT	3 cut(s)	494, 910, 973
Hsp92II	CATG	4 cut(s)	391, 466, 562, 786
HspAI	GCGC	3 cut(s)	767, 769, 865
Kzo9I	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
LmnI	GCTCC	4 cut(s)	10, 202, 244, 520
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	6 cut(s)	225, 289, 525, 667, 799, 895
MaeI	CTAG	8 cut(s)	42, 191, 650, 654, 738, 825, 893, 956
MaeII	ACGT	3 cut(s)	494, 910, 973
MaeIII	GTNAC	4 cut(s)	353, 457, 490, 969
MalI	GATC	6 cut(s)	213, 405, 450, 597, 990, 1046
MboI	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
MboII	GAAGA	6 cut(s)	29, 46, 308, 392, 488, 544
MflI	RGATCY	2 cut(s)	211, 1044
MhlI	GDGCHC	2 cut(s)	15, 1109
MluCI	AATT	9 cut(s)	129, 289, 327, 444, 575, 591, 879, 1063, 1111
MlyI	GAGTC	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	5 cut(s)	111, 132, 171, 321, 1041
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	3 cut(s)	350, 630, 978
MvaI	CCWGG	3 cut(s)	350, 630, 978
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	5 cut(s)	235, 244, 253, 559, 871
NdeII	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
NlaIII	CATG	4 cut(s)	391, 466, 562, 786
NlaIV	GGNNCC	2 cut(s)	6, 12
NmeAIII	GCCGAG	1 cut(s)	1078
NmuCI	GTSAC	3 cut(s)	353, 457, 490
NspI	RCATGY	2 cut(s)	391, 786
PaeI	GCATGC	1 cut(s)	391
PauI	GCGCGC	1 cut(s)	767
PceI	AGGCCT	1 cut(s)	946
PcsI	WCGNNNNNNNCGW	3 cut(s)	57, 979, 988
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	3 cut(s)	421, 427, 886
PflMI	CCANNNNNTGG	2 cut(s)	207, 635
PfoI	TCCNGGA	1 cut(s)	976
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	184
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	1 cut(s)	184
Ppu21I	YACGTR	1 cut(s)	911
Psp6I	CCWGG	3 cut(s)	348, 628, 976
PspCI	CACGTG	1 cut(s)	911
PspFI	CCCAGC	2 cut(s)	200, 961
PspGI	CCWGG	3 cut(s)	348, 628, 976
PspN4I	GGNNCC	2 cut(s)	6, 12
PspPI	GGNCC	3 cut(s)	92, 623, 859
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	2 cut(s)	211, 1044
PteI	GCGCGC	1 cut(s)	767
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	111, 132, 171, 321, 1041
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	6 cut(s)	211, 403, 448, 595, 988, 1044
Sau96I	GGNCC	3 cut(s)	92, 623, 859
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	3 cut(s)	350, 630, 978
SduI	GDGCHC	2 cut(s)	15, 1109
SfaNI	GCATC	6 cut(s)	225, 289, 525, 667, 799, 895
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	623, 859
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	9 cut(s)	129, 289, 327, 444, 575, 591, 879, 1063, 1111
SseBI	AGGCCT	1 cut(s)	946
SspMI	CTAG	8 cut(s)	42, 191, 650, 654, 738, 825, 893, 956
StuI	AGGCCT	1 cut(s)	946
StyD4I	CCNGG	3 cut(s)	348, 628, 976
TaaI	ACNGT	1 cut(s)	472
TaiI	ACGT	3 cut(s)	497, 913, 976
TaqI	TCGA	2 cut(s)	51, 406
TasI	AATT	9 cut(s)	129, 289, 327, 444, 575, 591, 879, 1063, 1111
TfiI	GAWTC	3 cut(s)	421, 427, 886
Tru1I	TTAA	5 cut(s)	111, 132, 171, 321, 1041
Tru9I	TTAA	5 cut(s)	111, 132, 171, 321, 1041
TscAI	CASTG	1 cut(s)	212
TseFI	GTSAC	3 cut(s)	353, 457, 490
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	3 cut(s)	353, 457, 490
TspDTI	ATGAA	3 cut(s)	676, 816, 1076
TspRI	CASTG	1 cut(s)	212
Van91I	CCANNNNNTGG	2 cut(s)	207, 635
VpaK11BI	GGWCC	2 cut(s)	623, 859
XagI	CCTNNNNNAGG	1 cut(s)	53
XapI	RAATTY	2 cut(s)	575, 1111
XceI	RCATGY	2 cut(s)	391, 786
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	8 cut(s)	42, 191, 650, 654, 738, 825, 893, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.