MD17G1155300.v1.1

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
14789343 .. 14792654
3312 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1155300.v1.1.491

Sequence Viewer

Length: 1278 bp
ATGGCGCCAGAACCAGAAGACATCAAGGATGAGAAGAACCCTAGACCCCTTGACGAGGACGACATCGTCATCATGAAGACCTATGGATTAGGGCCGTACTCGAAGCACATTAAGCAAGCAGAGAAAGAAGTAAAGGATTTGGCTAAAAAGGTCAATGACTTGCGCGGTATTAAGGAGTCCGACACTGGGTTGGCTGCACCCAGCCAGTATGATCTTGTTTCCGACAAGCAGATGATGCAGGAGGAACAGCCTCTTCAGGTGGCTAGATGTACAAAGATTATCAATCCCAATTCCGAGGATGCTAAATACGTCATTAATGTCAAACAAATTGCCAAGTTTGTTGTGGGTCTGGGTGACAAGGTTTCCCCAACGGATATAGAAGAAGGCATGCGTGTGGGGGTTGATAGGAACAAGTATCAAATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACCGTGGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGATGTAAGGAGCAGATTGAAAAGATGAGAGAAGTTGTTGAGCTGCCTATGCTTCACCCTGAGAAATTTGTGAAGCTCGGGATCGATCCACCTAAGGGTGTTCTCTGTTATGGTCCTCCAGGAACGGGTAAAACTCTTCTGGCTAGGGCTGTCGCGAATAGAACTGATGCTTGCTTCATTCGTGTGATTGGGAGTGAGCTTGTTCAAAAATACGTTGGTGAGGGAGCTCGGATGGTCAGAGAACTTTTTCAGATGGCGCGCTCAAAGAAGGCCTGTATTGTGTTTTTCGATGAAGTGGATGCGATTGGAGGAGCTCGGTTTGATGATGGTGTGGGCGGAGATAATGAAGTTCAGAGGACTATGCTGGAAATTGTGAATCAGTTGGATGGCTTCGACGCTCGTGGAAATATTAAAGTCTTGATGGCAACAAACAGGCCTGATACGCTGGACCCAGCCCTACTGCGGCCAGGACGATTGGATAGGAAGGTCGAGTTCGGCCTTCCCGACTTGGAGAGTCGGACACAGATCTTCAAAATCCATACAAGAACAATGAATTGTGAAAGGGACATTCGGTTTGAACTGTTGGCTCGTCTCTGCCCAAATTCAACTGGAGCTGATATTAGGAGTGTTTGCACGGAAGCTGGGATGTATGCCATAAGAGCCCGAAGGAAGACGGCAACAGAGAAGGACTTCCTCGATGCTGTTAACAAGGTCATAAAGGGGTATCAGAAGTTCAGTGCAACACCGAAGTACATGGTTTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.63

Weight (kDa)

6.86

Isoelectric Point (pI)

36.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_PRS7 PF21236 78 - 146 1.8e-39 26S proteasome regulatory subunit 7, OB domain
AAA PF00004 204 - 337 2.4e-40 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 359 - 402 3.1e-11 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 3 cut(s) 165, 665, 769
AciI CCGC 3 cut(s) 165, 846, 973
AclWI GGATC 3 cut(s) 443, 590, 599
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 3 cut(s) 420, 575, 1111
AcuI CTGAAG 1 cut(s) 239
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 98, 271, 1262
AfiI CCNNNNNNNGG 5 cut(s) 55, 186, 605, 635, 972
AgsI TTSAA 5 cut(s) 530, 716, 1042, 1088, 1116
AjnI CCWGG 2 cut(s) 628, 976
AluBI AGCT 7 cut(s) 553, 586, 709, 737, 824, 1124, 1151
AluI AGCT 7 cut(s) 553, 586, 709, 737, 824, 1124, 1151
Alw21I GWGCWC 2 cut(s) 739, 826
Alw26I GTCTC 1 cut(s) 1106
AlwI GGATC 3 cut(s) 443, 590, 599
Ama87I CYCGRG 1 cut(s) 587
AoxI GGCC 5 cut(s) 92, 780, 944, 974, 1006
ApeKI GCWGC 2 cut(s) 194, 553
ApoI RAATTY 3 cut(s) 420, 575, 1111
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AseI ATTAAT 1 cut(s) 315
Asp700I GAANNNNTTC 2 cut(s) 756, 1199
AspLEI GCGC 4 cut(s) 7, 165, 769, 771
AspS9I GGNCC 3 cut(s) 92, 623, 958
AsuHPI GGTGA 3 cut(s) 365, 557, 740
AvaI CYCGRG 1 cut(s) 587
AvaII GGWCC 2 cut(s) 623, 958
AxyI CCTNAGG 1 cut(s) 603
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 3 cut(s) 739, 826, 1174
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 3 cut(s) 24, 83, 1187
Bbv12I GWGCWC 2 cut(s) 739, 826
BbvI GCAGC 2 cut(s) 181, 540
BccI CCATC 5 cut(s) 736, 757, 830, 890, 925
BceAI ACGGC 2 cut(s) 79, 1200
BciT130I CCWGG 2 cut(s) 630, 978
BcoDI GTCTC 1 cut(s) 1106
BfaI CTAG 3 cut(s) 42, 264, 654
BfoI RGCGCY 1 cut(s) 8
BglII AGATCT 1 cut(s) 1035
BisI GCNGC 3 cut(s) 195, 554, 974
BlsI GCNGC 3 cut(s) 196, 555, 975
Bme1390I CCNGG 2 cut(s) 630, 978
Bme18I GGWCC 2 cut(s) 623, 958
BmeT110I CYCGRG 1 cut(s) 587
BmgT120I GGNCC 3 cut(s) 92, 623, 958
BmiI GGNNCC 2 cut(s) 6, 960
BmrFI CCNGG 2 cut(s) 630, 978
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 5 cut(s) 225, 289, 667, 799, 1198
BmuI ACTGGG 1 cut(s) 195
BpiI GAAGAC 3 cut(s) 24, 83, 1187
BpmI CTGGAG 2 cut(s) 612, 1140
Bsa29I ATCGAT 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 294, 471
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 186, 605, 635, 972
Bse1I ACTGG 3 cut(s) 190, 205, 1123
Bse21I CCTNAGG 1 cut(s) 603
BseBI CCWGG 2 cut(s) 630, 978
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 294, 471
BseGI GGATG 7 cut(s) 34, 304, 518, 747, 814, 901, 1161
BseLI CCNNNNNNNGG 5 cut(s) 55, 186, 605, 635, 972
BseMII CTCAG 1 cut(s) 561
BseNI ACTGG 3 cut(s) 190, 205, 1123
BsePI GCGCGC 1 cut(s) 767
BseRI GAGGAG 1 cut(s) 834
BseXI GCAGC 2 cut(s) 181, 540
BseYI CCCAGC 3 cut(s) 200, 961, 1151
BsgI GTGCAG 1 cut(s) 180
Bsh1236I CGCG 3 cut(s) 165, 665, 769
BshFI GGCC 5 cut(s) 94, 782, 946, 976, 1008
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 739, 826
BsiHKCI CYCGRG 1 cut(s) 587
BslFI GGGAC 1 cut(s) 1088
BslI CCNNNNNNNGG 5 cut(s) 55, 186, 605, 635, 972
BsmAI GTCTC 1 cut(s) 1106
BsmBI CGTCTC 1 cut(s) 1106
BsmFI GGGAC 1 cut(s) 1088
BsnI GGCC 5 cut(s) 94, 782, 946, 976, 1008
BsoBI CYCGRG 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 739, 826, 1174
Bsp1407I TGTACA 1 cut(s) 269
Bsp143I GATC 5 cut(s) 211, 448, 591, 595, 1035
Bsp68I TCGCGA 1 cut(s) 665
BspACI CCGC 3 cut(s) 165, 846, 973
BspANI GGCC 5 cut(s) 94, 782, 946, 976, 1008
BspCNI CTCAG 1 cut(s) 562
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 3 cut(s) 165, 665, 769
BspHI TCATGA 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 6, 960
BspPI GGATC 3 cut(s) 443, 590, 599
BspT107I GGYRCC 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 269
BsrI ACTGG 3 cut(s) 190, 205, 1123
BssECI CCNNGG 2 cut(s) 294, 471
BssHII GCGCGC 1 cut(s) 767
BssMI GATC 5 cut(s) 211, 448, 591, 595, 1035
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 2 cut(s) 630, 978
Bst4CI ACNGT 2 cut(s) 472, 1092
Bst6I CTCTTC 3 cut(s) 258, 471, 651
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 235
BstAUI TGTACA 1 cut(s) 269
BstC8I GCNNGC 4 cut(s) 117, 389, 682, 769
BstDEI CTNAG 2 cut(s) 570, 603
BstDSI CCRYGG 1 cut(s) 471
BstENI CCTNNNNNAGG 1 cut(s) 53
BstF5I GGATG 7 cut(s) 34, 304, 518, 747, 814, 901, 1161
BstFNI CGCG 3 cut(s) 165, 665, 769
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 4 cut(s) 7, 165, 769, 771
BstKTI GATC 5 cut(s) 214, 451, 594, 598, 1038
BstMAI GTCTC 1 cut(s) 1106
BstMBI GATC 5 cut(s) 211, 448, 591, 595, 1035
BstMWI GCNNNNNNNGC 5 cut(s) 112, 235, 559, 952, 1169
BstNI CCWGG 2 cut(s) 630, 978
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 628, 976
BstUI CGCG 3 cut(s) 165, 665, 769
BstV1I GCAGC 2 cut(s) 181, 540
BstV2I GAAGAC 3 cut(s) 24, 83, 1187
BstX2I RGATCY 1 cut(s) 1035
BstYI RGATCY 1 cut(s) 1035
Bsu15I ATCGAT 1 cut(s) 594
Bsu36I CCTNAGG 1 cut(s) 603
BsuRI GGCC 5 cut(s) 94, 782, 946, 976, 1008
BsuTUI ATCGAT 1 cut(s) 594
BtgI CCRYGG 1 cut(s) 471
BtsCI GGATG 7 cut(s) 34, 304, 518, 747, 814, 901, 1161
BtsIMutI CAGTG 2 cut(s) 183, 1252
BtuMI TCGCGA 1 cut(s) 665
Cac8I GCNNGC 4 cut(s) 117, 389, 682, 769
CciI TCATGA 1 cut(s) 72
CfoI GCGC 4 cut(s) 7, 165, 769, 771
Cfr13I GGNCC 3 cut(s) 92, 623, 958
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 1 cut(s) 914
Csp6I GTAC 3 cut(s) 97, 270, 1261
CviAII CATG 4 cut(s) 73, 388, 463, 1264
CviQI GTAC 3 cut(s) 97, 270, 1261
DdeI CTNAG 2 cut(s) 570, 603
DinI GGCGCC 1 cut(s) 6
DpnI GATC 5 cut(s) 213, 450, 593, 597, 1037
DpnII GATC 5 cut(s) 211, 448, 591, 595, 1035
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
EaeI YGGCCR 1 cut(s) 974
Eam1104I CTCTTC 3 cut(s) 258, 471, 651
EarI CTCTTC 3 cut(s) 258, 471, 651
EciI GGCGGA 1 cut(s) 861
Ecl136II GAGCTC 2 cut(s) 737, 824
Eco147I AGGCCT 2 cut(s) 782, 946
Eco24I GRGCYC 3 cut(s) 739, 826, 1174
Eco47I GGWCC 2 cut(s) 623, 958
Eco53kI GAGCTC 2 cut(s) 737, 824
Eco57I CTGAAG 1 cut(s) 239
Eco81I CCTNAGG 1 cut(s) 603
Eco88I CYCGRG 1 cut(s) 587
EcoICRI GAGCTC 2 cut(s) 737, 824
EcoNI CCTNNNNNAGG 1 cut(s) 53
EcoRII CCWGG 2 cut(s) 628, 976
EcoT38I GRGCYC 3 cut(s) 739, 826, 1174
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 1106
FaeI CATG 4 cut(s) 76, 391, 466, 1267
FaqI GGGAC 1 cut(s) 1088
FatI CATG 4 cut(s) 72, 387, 462, 1263
Fnu4HI GCNGC 3 cut(s) 195, 554, 974
FokI GGATG 7 cut(s) 41, 311, 525, 754, 821, 908, 1168
FriOI GRGCYC 3 cut(s) 739, 826, 1174
Fsp4HI GCNGC 3 cut(s) 195, 554, 974
FspBI CTAG 3 cut(s) 42, 264, 654
GlaI GCGC 4 cut(s) 6, 164, 768, 770
GluI GCNGC 3 cut(s) 195, 554, 974
GsaI CCCAGC 3 cut(s) 204, 965, 1155
GsuI CTGGAG 2 cut(s) 612, 1140
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 5 cut(s) 94, 782, 946, 976, 1008
HgaI GACGC 1 cut(s) 914
HhaI GCGC 4 cut(s) 7, 165, 769, 771
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 76, 391, 466, 1267
Hin6I GCGC 4 cut(s) 5, 163, 767, 769
HinP1I GCGC 4 cut(s) 5, 163, 767, 769
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HinfI GANTC 4 cut(s) 176, 427, 886, 1024
HpaI GTTAAC 1 cut(s) 1216
HphI GGTGA 3 cut(s) 365, 557, 740
Hpy166II GTNNAC 2 cut(s) 1216, 1270
Hpy188III TCNNGA 5 cut(s) 73, 589, 664, 928, 1013
Hpy8I GTNNAC 2 cut(s) 1216, 1270
Hpy99I CGWCG 1 cut(s) 908
HpyAV CCTTC 6 cut(s) 377, 772, 988, 1019, 1170, 1189
HpyCH4III ACNGT 2 cut(s) 472, 1092
HpyCH4IV ACGT 2 cut(s) 309, 723
HpyCH4V TGCA 4 cut(s) 197, 238, 1143, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 112, 235, 559, 952, 1169
HpyF3I CTNAG 2 cut(s) 570, 603
HpySE526I ACGT 2 cut(s) 309, 723
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 76, 391, 466, 1267
HspAI GCGC 4 cut(s) 5, 163, 767, 769
KasI GGCGCC 1 cut(s) 4
KspAI GTTAAC 1 cut(s) 1216
Kzo9I GATC 5 cut(s) 211, 448, 591, 595, 1035
LmnI GCTCC 4 cut(s) 520, 734, 821, 1121
Lsp1109I GCAGC 2 cut(s) 181, 540
LweI GCATC 5 cut(s) 225, 289, 667, 799, 1198
MaeI CTAG 3 cut(s) 42, 264, 654
MaeII ACGT 2 cut(s) 309, 723
MaeIII GTNAC 3 cut(s) 353, 457, 490
MalI GATC 5 cut(s) 213, 450, 593, 597, 1037
MboI GATC 5 cut(s) 211, 448, 591, 595, 1035
MboII GAAGA 9 cut(s) 29, 46, 88, 245, 392, 488, 638, 1030, 1192
MfeI CAATTG 1 cut(s) 1273
MflI RGATCY 1 cut(s) 1035
MhlI GDGCHC 3 cut(s) 739, 826, 1174
MluCI AATT 9 cut(s) 289, 327, 420, 444, 575, 879, 1063, 1111, 1273
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 185, 1033
MmeI TCCRAC 4 cut(s) 204, 246, 873, 1007
MroXI GAANNNNTTC 2 cut(s) 756, 1199
MseI TTAA 5 cut(s) 111, 171, 315, 921, 1215
MslI CAYNNNNRTG 2 cut(s) 392, 692
MspR9I CCNGG 2 cut(s) 630, 978
MunI CAATTG 1 cut(s) 1273
MvaI CCWGG 2 cut(s) 630, 978
MvnI CGCG 3 cut(s) 165, 665, 769
MwoI GCNNNNNNNGC 5 cut(s) 112, 235, 559, 952, 1169
NarI GGCGCC 1 cut(s) 5
NdeII GATC 5 cut(s) 211, 448, 591, 595, 1035
NlaIII CATG 4 cut(s) 76, 391, 466, 1267
NlaIV GGNNCC 2 cut(s) 6, 960
NmuCI GTSAC 3 cut(s) 353, 457, 490
NruI TCGCGA 1 cut(s) 665
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PagI TCATGA 1 cut(s) 72
PauI GCGCGC 1 cut(s) 767
PceI AGGCCT 2 cut(s) 782, 946
PcsI WCGNNNNNNNCGW 1 cut(s) 1011
PdmI GAANNNNTTC 2 cut(s) 756, 1199
PfeI GAWTC 2 cut(s) 427, 886
PflFI GACNNNGTC 1 cut(s) 65
PfoI TCCNGGA 1 cut(s) 628
PkrI GCNGC 3 cut(s) 196, 555, 975
PleI GAGTC 2 cut(s) 184, 1032
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 184, 1032
PshBI ATTAAT 1 cut(s) 315
Psp124BI GAGCTC 2 cut(s) 739, 826
Psp6I CCWGG 2 cut(s) 628, 976
PspFI CCCAGC 3 cut(s) 200, 961, 1151
PspGI CCWGG 2 cut(s) 628, 976
PspN4I GGNNCC 2 cut(s) 6, 960
PspPI GGNCC 3 cut(s) 92, 623, 958
PsrI GAACNNNNNNTAC 2 cut(s) 1226, 1258
PsuI RGATCY 1 cut(s) 1035
PsyI GACNNNGTC 1 cut(s) 65
PteI GCGCGC 1 cut(s) 767
RruI TCGCGA 1 cut(s) 665
RsaI GTAC 3 cut(s) 98, 271, 1262
RsaNI GTAC 3 cut(s) 97, 270, 1261
RseI CAYNNNNRTG 2 cut(s) 392, 692
SacI GAGCTC 2 cut(s) 739, 826
SaqAI TTAA 5 cut(s) 111, 171, 315, 921, 1215
SatI GCNGC 3 cut(s) 195, 554, 974
Sau3AI GATC 5 cut(s) 211, 448, 591, 595, 1035
Sau96I GGNCC 3 cut(s) 92, 623, 958
SchI GAGTC 2 cut(s) 185, 1033
ScrFI CCNGG 2 cut(s) 630, 978
SduI GDGCHC 3 cut(s) 739, 826, 1174
SfaNI GCATC 5 cut(s) 225, 289, 667, 799, 1198
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 623, 958
SmiMI CAYNNNNRTG 2 cut(s) 392, 692
SphI GCATGC 1 cut(s) 391
Sse9I AATT 9 cut(s) 289, 327, 420, 444, 575, 879, 1063, 1111, 1273
SseBI AGGCCT 2 cut(s) 782, 946
SsiI CCGC 3 cut(s) 165, 846, 973
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 1 cut(s) 919
SspMI CTAG 3 cut(s) 42, 264, 654
SstI GAGCTC 2 cut(s) 739, 826
StuI AGGCCT 2 cut(s) 782, 946
StyD4I CCNGG 2 cut(s) 628, 976
TaaI ACNGT 2 cut(s) 472, 1092
TaiI ACGT 2 cut(s) 312, 726
TaqI TCGA 6 cut(s) 101, 594, 798, 903, 999, 1206
TasI AATT 9 cut(s) 289, 327, 420, 444, 575, 879, 1063, 1111, 1273
TatI WGTACW 2 cut(s) 269, 1260
TauI GCSGC 1 cut(s) 976
TfiI GAWTC 2 cut(s) 427, 886
Tru1I TTAA 5 cut(s) 111, 171, 315, 921, 1215
Tru9I TTAA 5 cut(s) 111, 171, 315, 921, 1215
TscAI CASTG 2 cut(s) 190, 1252
TseFI GTSAC 3 cut(s) 353, 457, 490
TseI GCWGC 2 cut(s) 194, 553
Tsp45I GTSAC 3 cut(s) 353, 457, 490
TspDTI ATGAA 5 cut(s) 89, 676, 816, 870, 1076
TspGWI ACGGA 2 cut(s) 386, 1160
TspRI CASTG 2 cut(s) 190, 1252
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 623, 958
VspI ATTAAT 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 53
XapI RAATTY 3 cut(s) 420, 575, 1111
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 2 cut(s) 340, 469
XmnI GAANNNNTTC 2 cut(s) 756, 1199
XspI CTAG 3 cut(s) 42, 264, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.