Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003762

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG462600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGTGTTTAAAGTTGAGTTCTTTGGCAGGTATTAAGGAGTCTGATACTGGTCTAGCTGCTCCCAGCCAGTGGGATCTTGTTTCGGATAAGCAGATGATGCAGGAGGAGCAACCTCTGCAGGTTGCGAGGTGTACCAAGATTATCAGTCCCAATTCTGAGGATGCTAAATATGTCATCAATGTTAAGCAAATTGCAAAGTTTGTAGTTGGCCTGGGTGACAAGGTTTCCCCAACAGATATAGAAGAAGGCATGCGTGTCGGGGTTGATCGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACGGTGGAAGAGAAGCCAGATGTGACGTATAATGATGTCGGTGGATGTAAGGAGCAGATTGAGAAGATGCGAGAAGTTGTTGAGCTACCCATGCTTCACCCTGAGAAATTTGTGAAGCTTGGAATTGATCCTCCTAAGGGTGTTCTCTGTTATGGTCCTCCAGGGACTGGTAAAACACTTCTAGCTAGAGCTGTGGCTAACAGAACTGATGCTTGTTTCATTCGTGTTATTGGGAGTGAACTTGTTCAGAAGTATGTTGGTGAGGGGGCTAGGATGGTGCGAGAGCTATTTCAGATGGCGCGCTCAAAAAAGGCGTGTATTGTGTTTTTTGATGAAGTTGATGCCATAGGAGGGGCTAGATTTGATGATGGTGTGGGTGGAGACAATGAGGTCCAGCGCACTATGCTTGAAATTGTGAATCAGCTAGATGGTTTTGATGCGCGTGGAAACATCAAAGTCTTGATGGCAACAAACAGGCCTGACACACTAGACCCAGCATTGTTACGTCCTGGACGATTGGATCGTAAGGTTGAGTTTGGCCTCCCAGATATGGAGAGCAGGACGCAGATATTTAAGATCCATACACGAACAATGAATTGTGAAAGAGATGTTAGGTTTGAACTTCTCGCTCGGCTGTGCCCAAATTCAACTGGAGCTGATATAAGAAGTGTATGCACAGAAGCCGGAATGTATGCCATTCGTGCACGAAGGAAGACAGTAACCGAAAAGGACTTCCTTGATGCTGTGAATAAGGTCATTAAGGGTTACCAGAAGTTCAGTGCTACTCCCAAATACATGGTTTACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

379

Amino Acids

42.28

Weight (kDa)

8.26

Isoelectric Point (pI)

36.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OB_PRS7	PF21236	32 - 100	3.7e-39	26S proteasome regulatory subunit 7, OB domain
AAA	PF00004	158 - 291	1.9e-40	ATPase family associated with various cellular activities (AAA)
AAA_lid_3	PF17862	313 - 356	1.6e-12	AAA+ lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003762)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53750 AT1G53780 AT1G53780 AT1G53780 AT1G53780
fragaria_vesca	FvH4_3g41880 FvH4_3g42030 FvH4_6g36060
malus_domestica	MD09G1171700.v1.1 MD17G1155300.v1.1
prunus_persica	Prupe.3G030100_v2.0.a1
pyrus_communis	pycom09g08900
rosa_chinensis	RchiOBHm_Chr2g0148151 RchiOBHm_Chr5g0074901 RchiOBHm_Chr5g0075071
rosa_laevigata	RLG00000020321 RLG00000036526
rosa_multiflora	Rmu_sc0001516.1_g000100 Rmu_sc0006984.1_g000021
rosa_roxburghii	Rroxscaffold_1G00006550 Rroxscaffold_2G00099040
rosa_rugosa	Rorug02G0404000 Rorug02G0417600 Rorug05G0435900
rosa_samantha	Rh2AG462600 Rh2BG475600 Rh2CG449400 Rh2DG484300 Rh5AG493400 Rh5BG514900 Rh5CG538500 Rh5DG527300
rosa_wichuraiana	Rw2G037710 Rw5G045750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	719
Acc36I	ACCTGC	2 cut(s)	17, 109
AccB7I	CCANNNNNTGG	2 cut(s)	69, 497
AccII	CGCG	2 cut(s)	631, 772
AclWI	GGATC	5 cut(s)	81, 305, 452, 858, 901
AcsI	RAATTY	2 cut(s)	437, 973
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	5 cut(s)	69, 467, 497, 681, 880
AgsI	TTSAA	3 cut(s)	740, 950, 978
AjnI	CCWGG	3 cut(s)	210, 490, 838
AluBI	AGCT	8 cut(s)	56, 415, 448, 515, 521, 616, 754, 986
AluI	AGCT	8 cut(s)	56, 415, 448, 515, 521, 616, 754, 986
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	1 cut(s)	705
Alw44I	GTGCAC	1 cut(s)	1032
AlwI	GGATC	5 cut(s)	81, 305, 452, 858, 901
AlwNI	CAGNNNCTG	1 cut(s)	497
AoxI	GGCC	3 cut(s)	208, 806, 868
ApaLI	GTGCAC	1 cut(s)	1032
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	2 cut(s)	437, 973
Asp700I	GAANNNNTTC	1 cut(s)	573
AspLEI	GCGC	4 cut(s)	631, 633, 729, 772
AspS9I	GGNCC	2 cut(s)	485, 721
AsuHPI	GGTGA	3 cut(s)	227, 419, 602
AvaII	GGWCC	2 cut(s)	485, 721
AxyI	CCTNAGG	1 cut(s)	465
BaeGI	GKGCMC	2 cut(s)	971, 1036
BbsI	GAAGAC	1 cut(s)	1049
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	5 cut(s)	598, 619, 692, 752, 787
BcgI	CGANNNNNNTGC	2 cut(s)	238, 272
BciT130I	CCWGG	3 cut(s)	212, 492, 840
BcoDI	GTCTC	1 cut(s)	705
BfaI	CTAG	7 cut(s)	53, 512, 516, 600, 687, 755, 818
BfmI	CTRYAG	1 cut(s)	116
BfuAI	ACCTGC	2 cut(s)	17, 109
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	212, 492, 840
Bme18I	GGWCC	2 cut(s)	485, 721
BmgT120I	GGNCC	2 cut(s)	485, 721
BmrFI	CCNGG	3 cut(s)	212, 492, 840
BmsI	GCATC	7 cut(s)	87, 151, 387, 529, 661, 757, 1060
BpiI	GAAGAC	1 cut(s)	1049
BpmI	CTGGAG	2 cut(s)	474, 1002
BsaJI	CCNNGG	2 cut(s)	211, 491
Bsc4I	CCNNNNNNNGG	5 cut(s)	69, 467, 497, 681, 880
Bse1I	ACTGG	4 cut(s)	52, 67, 502, 985
Bse21I	CCTNAGG	1 cut(s)	465
BseBI	CCWGG	3 cut(s)	212, 492, 840
BseDI	CCNNGG	2 cut(s)	211, 491
BseGI	GGATG	3 cut(s)	166, 380, 609
BseLI	CCNNNNNNNGG	5 cut(s)	69, 467, 497, 681, 880
BseMII	CTCAG	2 cut(s)	147, 423
BseNI	ACTGG	4 cut(s)	52, 67, 502, 985
BsePI	GCGCGC	1 cut(s)	629
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	2 cut(s)	971, 1036
BseXI	GCAGC	1 cut(s)	43
BseYI	CCCAGC	2 cut(s)	62, 823
Bsh1236I	CGCG	2 cut(s)	631, 772
BshFI	GGCC	3 cut(s)	210, 808, 870
BsiHKAI	GWGCWC	1 cut(s)	1036
BsiSI	CCGG	1 cut(s)	1014
BslFI	GGGAC	2 cut(s)	132, 508
BslI	CCNNNNNNNGG	5 cut(s)	69, 467, 497, 681, 880
BsmAI	GTCTC	1 cut(s)	705
BsmFI	GGGAC	2 cut(s)	132, 508
BsnI	GGCC	3 cut(s)	210, 808, 870
Bsp1286I	GDGCHC	2 cut(s)	971, 1036
Bsp143I	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
BspANI	GGCC	3 cut(s)	210, 808, 870
BspCNI	CTCAG	2 cut(s)	148, 424
BspFNI	CGCG	2 cut(s)	631, 772
BspMAI	CTGCAG	1 cut(s)	120
BspMI	ACCTGC	2 cut(s)	17, 109
BspPI	GGATC	5 cut(s)	81, 305, 452, 858, 901
BsrI	ACTGG	4 cut(s)	52, 67, 502, 985
BssECI	CCNNGG	2 cut(s)	211, 491
BssHII	GCGCGC	1 cut(s)	629
BssMI	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
Bst2UI	CCWGG	3 cut(s)	212, 492, 840
Bst4CI	ACNGT	2 cut(s)	334, 1048
Bst6I	CTCTTC	1 cut(s)	333
BstAPI	GCANNNNNTGC	2 cut(s)	97, 115
BstC8I	GCNNGC	2 cut(s)	251, 631
BstDEI	CTNAG	3 cut(s)	156, 432, 465
BstEII	GGTNACC	1 cut(s)	1094
BstF5I	GGATG	3 cut(s)	166, 380, 609
BstFNI	CGCG	2 cut(s)	631, 772
BstHHI	GCGC	4 cut(s)	631, 633, 729, 772
BstKTI	GATC	6 cut(s)	76, 268, 313, 460, 853, 909
BstMAI	GTCTC	1 cut(s)	705
BstMBI	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
BstMWI	GCNNNNNNNGC	6 cut(s)	97, 106, 115, 421, 733, 1031
BstNI	CCWGG	3 cut(s)	212, 492, 840
BstNSI	RCATGY	1 cut(s)	253
BstPI	GGTNACC	1 cut(s)	1094
BstSCI	CCNGG	3 cut(s)	210, 490, 838
BstSFI	CTRYAG	1 cut(s)	116
BstSLI	GKGCMC	2 cut(s)	971, 1036
BstUI	CGCG	2 cut(s)	631, 772
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	1049
BstX2I	RGATCY	2 cut(s)	73, 906
BstXI	CCANNNNNNTGG	1 cut(s)	1126
BstYI	RGATCY	2 cut(s)	73, 906
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	3 cut(s)	210, 808, 870
BtsCI	GGATG	3 cut(s)	166, 380, 609
BtsIMutI	CAGTG	2 cut(s)	74, 1114
BveI	ACCTGC	2 cut(s)	17, 109
Cac8I	GCNNGC	2 cut(s)	251, 631
CaiI	CAGNNNCTG	1 cut(s)	497
CfoI	GCGC	4 cut(s)	631, 633, 729, 772
Cfr13I	GGNCC	2 cut(s)	485, 721
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	1 cut(s)	132
CviAII	CATG	4 cut(s)	250, 325, 421, 1126
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	3 cut(s)	156, 432, 465
DpnI	GATC	6 cut(s)	75, 267, 312, 459, 852, 908
DpnII	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
DraI	TTTAAA	1 cut(s)	9
DrdI	GACNNNNNNGTC	1 cut(s)	719
DseDI	GACNNNNNNGTC	1 cut(s)	719
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	808
Eco47I	GGWCC	2 cut(s)	485, 721
Eco81I	CCTNAGG	1 cut(s)	465
Eco91I	GGTNACC	1 cut(s)	1094
EcoO65I	GGTNACC	1 cut(s)	1094
EcoRII	CCWGG	3 cut(s)	210, 490, 838
FaeI	CATG	4 cut(s)	253, 328, 424, 1129
FaqI	GGGAC	2 cut(s)	132, 508
FatI	CATG	4 cut(s)	249, 324, 420, 1125
Fnu4HI	GCNGC	1 cut(s)	57
FokI	GGATG	3 cut(s)	173, 387, 616
Fsp4HI	GCNGC	1 cut(s)	57
FspBI	CTAG	7 cut(s)	53, 512, 516, 600, 687, 755, 818
GlaI	GCGC	4 cut(s)	630, 632, 728, 771
GluI	GCNGC	1 cut(s)	57
GsaI	CCCAGC	2 cut(s)	66, 827
GsuI	CTGGAG	2 cut(s)	474, 1002
HaeIII	GGCC	3 cut(s)	210, 808, 870
HapII	CCGG	1 cut(s)	1014
HgaI	GACGC	1 cut(s)	901
HhaI	GCGC	4 cut(s)	631, 633, 729, 772
Hin1II	CATG	4 cut(s)	253, 328, 424, 1129
Hin6I	GCGC	4 cut(s)	629, 631, 727, 770
HinP1I	GCGC	4 cut(s)	629, 631, 727, 770
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	38, 283, 289, 748
HpaII	CCGG	1 cut(s)	1014
HphI	GGTGA	3 cut(s)	227, 419, 602
Hpy166II	GTNNAC	4 cut(s)	132, 569, 1034, 1132
Hpy188I	TCNGA	7 cut(s)	43, 85, 157, 282, 288, 579, 624
Hpy188III	TCNNGA	1 cut(s)	790
Hpy8I	GTNNAC	4 cut(s)	132, 569, 1034, 1132
HpyAV	CCTTC	2 cut(s)	239, 1032
HpyCH4III	ACNGT	2 cut(s)	334, 1048
HpyCH4IV	ACGT	2 cut(s)	356, 835
HpyCH4V	TGCA	5 cut(s)	100, 118, 194, 1005, 1034
HpyF10VI	GCNNNNNNNGC	6 cut(s)	97, 106, 115, 421, 733, 1031
HpyF3I	CTNAG	3 cut(s)	156, 432, 465
HpySE526I	ACGT	2 cut(s)	356, 835
Hsp92II	CATG	4 cut(s)	253, 328, 424, 1129
HspAI	GCGC	4 cut(s)	629, 631, 727, 770
Kzo9I	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
LmnI	GCTCC	4 cut(s)	64, 106, 382, 983
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	7 cut(s)	87, 151, 387, 529, 661, 757, 1060
MaeI	CTAG	7 cut(s)	53, 512, 516, 600, 687, 755, 818
MaeII	ACGT	2 cut(s)	356, 835
MaeIII	GTNAC	6 cut(s)	215, 319, 352, 831, 1048, 1094
MalI	GATC	6 cut(s)	75, 267, 312, 459, 852, 908
MboI	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
MboII	GAAGA	4 cut(s)	254, 350, 406, 1054
MflI	RGATCY	2 cut(s)	73, 906
MhlI	GDGCHC	2 cut(s)	971, 1036
MluCI	AATT	8 cut(s)	151, 189, 306, 437, 453, 741, 925, 973
MlyI	GAGTC	1 cut(s)	47
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	5 cut(s)	8, 33, 183, 903, 1089
MspI	CCGG	1 cut(s)	1014
MspR9I	CCNGG	3 cut(s)	212, 492, 840
MvaI	CCWGG	3 cut(s)	212, 492, 840
MvnI	CGCG	2 cut(s)	631, 772
MwoI	GCNNNNNNNGC	6 cut(s)	97, 106, 115, 421, 733, 1031
NdeII	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
NlaIII	CATG	4 cut(s)	253, 328, 424, 1129
NmeAIII	GCCGAG	1 cut(s)	940
NmuCI	GTSAC	3 cut(s)	215, 319, 352
NspI	RCATGY	1 cut(s)	253
PaeI	GCATGC	1 cut(s)	253
PauI	GCGCGC	1 cut(s)	629
PceI	AGGCCT	1 cut(s)	808
PcsI	WCGNNNNNNNCGW	2 cut(s)	841, 850
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	3 cut(s)	283, 289, 748
PflMI	CCANNNNNTGG	2 cut(s)	69, 497
PfoI	TCCNGGA	1 cut(s)	838
PkrI	GCNGC	1 cut(s)	58
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
Psp6I	CCWGG	3 cut(s)	210, 490, 838
PspEI	GGTNACC	1 cut(s)	1094
PspFI	CCCAGC	2 cut(s)	62, 823
PspGI	CCWGG	3 cut(s)	210, 490, 838
PspPI	GGNCC	2 cut(s)	485, 721
PstI	CTGCAG	1 cut(s)	120
PstNI	CAGNNNCTG	1 cut(s)	497
PsuI	RGATCY	2 cut(s)	73, 906
PteI	GCGCGC	1 cut(s)	629
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SaqAI	TTAA	5 cut(s)	8, 33, 183, 903, 1089
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	6 cut(s)	73, 265, 310, 457, 850, 906
Sau96I	GGNCC	2 cut(s)	485, 721
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	3 cut(s)	212, 492, 840
SduI	GDGCHC	2 cut(s)	971, 1036
SfaNI	GCATC	7 cut(s)	87, 151, 387, 529, 661, 757, 1060
SfcI	CTRYAG	1 cut(s)	116
SinI	GGWCC	2 cut(s)	485, 721
SphI	GCATGC	1 cut(s)	253
Sse9I	AATT	8 cut(s)	151, 189, 306, 437, 453, 741, 925, 973
SseBI	AGGCCT	1 cut(s)	808
SspMI	CTAG	7 cut(s)	53, 512, 516, 600, 687, 755, 818
StuI	AGGCCT	1 cut(s)	808
StyD4I	CCNGG	3 cut(s)	210, 490, 838
TaaI	ACNGT	2 cut(s)	334, 1048
TaiI	ACGT	2 cut(s)	359, 838
TaqI	TCGA	1 cut(s)	268
TasI	AATT	8 cut(s)	151, 189, 306, 437, 453, 741, 925, 973
TfiI	GAWTC	3 cut(s)	283, 289, 748
Tru1I	TTAA	5 cut(s)	8, 33, 183, 903, 1089
Tru9I	TTAA	5 cut(s)	8, 33, 183, 903, 1089
TscAI	CASTG	2 cut(s)	74, 1114
TseFI	GTSAC	3 cut(s)	215, 319, 352
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	3 cut(s)	215, 319, 352
TspDTI	ATGAA	3 cut(s)	538, 678, 938
TspRI	CASTG	2 cut(s)	74, 1114
Van91I	CCANNNNNTGG	2 cut(s)	69, 497
VneI	GTGCAC	1 cut(s)	1032
VpaK11BI	GGWCC	2 cut(s)	485, 721
XapI	RAATTY	2 cut(s)	437, 973
XceI	RCATGY	1 cut(s)	253
XcmI	CCANNNNNNNNNTGG	1 cut(s)	331
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	7 cut(s)	53, 512, 516, 600, 687, 755, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.