RchiOBHm_Chr5g0075071

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
80922998 .. 80924275
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34982

Sequence Viewer

Length: 1278 bp
ATGGCGCCTGATCCGGAGGACAACATGAAAGACCAGAAAAACCCTAGACCCCTCGACGAGGACGACATCGCACTCCTCAAAACATATGGAACAGGACCCTATTCAACTCCCATCAAAAACGTGGAGAAGGAAATCAAAGACAAGGCTAAAACCTTGAACAGTTTATGTGGCATTAAGGAATCGGACACTGGCCTAGCTACTCCTACCCACTGGGATCTTATTTCGGATGGAAAGATGATGGGGGAGAAACCTCTCAAGGTGGCAAGATGCACCAAGATAATTAACCCTAATTCCGAAGATGCAAAATACGTCATCAACGTTGCGCATATTGCAAAGTTTGTGGTCGGCTTGGGCGAGAGGGTTTCCCCAACTGATATAGAAGAAGGCATGCGTGTTGGGGTCGACCAACAGAAATTTCAAATTCAGATTCCTCTGCCTCCCAGAATTGATCCAACTGTGACCATGATGACTGTGGAAGAGAAGCCAGATGTAACATACAACGACGTTGGTGGATGTAAGGACCAGATCGAAAAGATGCGCGAGGTGGTTGAGCTACCATTGCTTCACCCTGAGAAGTTTGTCAAGCTTGGGATTGACCCTCCCAAGGGTGTTCTCTGCTATGGTCCTCCAGGAACTGGCAAGACCCTTCTAGCTAGAGCCGTGGCCAATCGAACAGATGCTTGCTTCATTCGTGTCATTGGGAGTGAGCTTGTTCAGAAATATGTTGGAGAAGGAGCTAGGATGGTTCGAGAGCTGTTCCAGATGGCGCGGACCAAGAAGGCTTGCATTGTGTTTTTCGATGAGGTAGATGCCATAGGAGGTGCCAGGTTTGATGATGGTGCTGGCGGAGACGTTGAAGTTCAGCGTACAATGCTTGAGATTGTGAACCAGCTCGACGGGTTTGATGCAAGGGGAAACATTAAGGTGTTGATGGCAACAAACAGGCCTGACACTCTAGATCCGGCATTGTTGCGCCCCGGAAGATTGGATCGGAAGGTCGAGTTCCGTCTGCCTGATATGGAGAGTAGAACTCAGATTTTTAAGATCCATGCAAGGACCATGAATTGTGAAAGAGATGTTAGGTTTGAGCTTCTGGCTCGGATGTGCCCTAATTCCACTGGAGCCGATATAAGAAGCGTGTGCACAGAAGCTGGAATGTTTGCCATTCGTGCACGGAGGAAGACGGTGACTGAAAAGGACTTCCTTGATGCCGTGAACAAAGTTATTAAGGGGTACCAGAAATTTAGTGCGACGCCCAAGTATATGGTTTACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.44

Weight (kDa)

7.96

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OB_PRS7 PF21236 79 - 146 8.2e-35 26S proteasome regulatory subunit 7, OB domain
AAA PF00004 204 - 336 3.2e-40 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 359 - 402 2.3e-12 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 324
Acc65I GGTACC 1 cut(s) 1233
AccB1I GGYRCC 3 cut(s) 4, 821, 1233
AccB7I CCANNNNNTGG 1 cut(s) 635
AccI GTMKAC 1 cut(s) 402
AccII CGCG 2 cut(s) 540, 769
AccIII TCCGGA 1 cut(s) 13
AciI CCGC 2 cut(s) 769, 846
AclI AACGTT 1 cut(s) 318
AclWI GGATC 6 cut(s) 5, 222, 443, 953, 996, 1039
AcoI YGGCCR 1 cut(s) 663
AcsI RAATTY 3 cut(s) 413, 420, 1241
AcyI GRCGYC 2 cut(s) 5, 1253
AfaI GTAC 2 cut(s) 868, 1235
AfiI CCNNNNNNNGG 4 cut(s) 58, 604, 605, 635
AgsI TTSAA 4 cut(s) 105, 157, 419, 857
AjnI CCWGG 2 cut(s) 628, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
Alw21I GWGCWC 2 cut(s) 1145, 1174
Alw26I GTCTC 1 cut(s) 843
Alw44I GTGCAC 2 cut(s) 1141, 1170
AlwI GGATC 6 cut(s) 5, 222, 443, 953, 996, 1039
AlwNI CAGNNNCTG 2 cut(s) 635, 1151
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 3 cut(s) 190, 663, 944
ApaLI GTGCAC 2 cut(s) 1141, 1170
ApoI RAATTY 3 cut(s) 413, 420, 1241
Asp718I GGTACC 1 cut(s) 1233
AspLEI GCGC 5 cut(s) 7, 325, 540, 769, 975
AspS9I GGNCC 5 cut(s) 95, 520, 623, 771, 1056
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 2 cut(s) 557, 1198
AvaII GGWCC 5 cut(s) 95, 520, 623, 771, 1056
BaeGI GKGCMC 3 cut(s) 1109, 1145, 1174
BalI TGGCCA 1 cut(s) 665
BanI GGYRCC 3 cut(s) 4, 821, 1233
BbsI GAAGAC 1 cut(s) 1187
Bbv12I GWGCWC 2 cut(s) 1145, 1174
BccI CCATC 7 cut(s) 119, 221, 232, 736, 757, 830, 925
BceAI ACGGC 2 cut(s) 644, 1196
BciT130I CCWGG 2 cut(s) 630, 826
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 1 cut(s) 843
BfaI CTAG 6 cut(s) 45, 194, 650, 654, 738, 956
BfoI RGCGCY 1 cut(s) 8
Bme1390I CCNGG 3 cut(s) 630, 826, 978
Bme18I GGWCC 5 cut(s) 95, 520, 623, 771, 1056
BmgT120I GGNCC 5 cut(s) 95, 520, 623, 771, 1056
BmiI GGNNCC 5 cut(s) 6, 97, 823, 1123, 1235
BmrFI CCNGG 3 cut(s) 630, 826, 978
BmrI ACTGGG 1 cut(s) 220
BmsI GCATC 7 cut(s) 257, 289, 525, 667, 799, 895, 1198
BmuI ACTGGG 1 cut(s) 220
BpiI GAAGAC 1 cut(s) 1187
BplI GAGNNNNNCTC 2 cut(s) 1015, 1047
BpmI CTGGAG 2 cut(s) 612, 1140
BpuEI CTTGAG 2 cut(s) 239, 896
BpuMI CCSGG 1 cut(s) 978
BsaHI GRCGYC 2 cut(s) 5, 1253
BsaJI CCNNGG 3 cut(s) 603, 660, 976
BsaWI WCCGGW 1 cut(s) 13
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 604, 605, 635
Bse1I ACTGG 4 cut(s) 193, 215, 640, 1123
Bse3DI GCAATG 1 cut(s) 557
BseAI TCCGGA 1 cut(s) 13
BseBI CCWGG 2 cut(s) 630, 826
BseDI CCNNGG 3 cut(s) 603, 660, 976
BseGI GGATG 4 cut(s) 232, 518, 747, 1107
BseLI CCNNNNNNNGG 4 cut(s) 58, 604, 605, 635
BseMI GCAATG 1 cut(s) 557
BseMII CTCAG 2 cut(s) 561, 1046
BseNI ACTGG 4 cut(s) 193, 215, 640, 1123
BseRI GAGGAG 1 cut(s) 65
BseSI GKGCMC 3 cut(s) 1109, 1145, 1174
Bsh1236I CGCG 2 cut(s) 540, 769
BshFI GGCC 3 cut(s) 192, 665, 946
BshNI GGYRCC 3 cut(s) 4, 821, 1233
BsiHKAI GWGCWC 2 cut(s) 1145, 1174
BsiSI CCGG 3 cut(s) 14, 962, 978
BslI CCNNNNNNNGG 4 cut(s) 58, 604, 605, 635
BsmAI GTCTC 1 cut(s) 843
BsmBI CGTCTC 1 cut(s) 843
BsnI GGCC 3 cut(s) 192, 665, 946
Bsp1286I GDGCHC 3 cut(s) 1109, 1145, 1174
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
BspACI CCGC 2 cut(s) 769, 846
BspANI GGCC 3 cut(s) 192, 665, 946
BspCNI CTCAG 2 cut(s) 562, 1045
BspEI TCCGGA 1 cut(s) 13
BspFNI CGCG 2 cut(s) 540, 769
BspLI GGNNCC 5 cut(s) 6, 97, 823, 1123, 1235
BspPI GGATC 6 cut(s) 5, 222, 443, 953, 996, 1039
BspT107I GGYRCC 3 cut(s) 4, 821, 1233
BsrDI GCAATG 1 cut(s) 557
BsrI ACTGG 4 cut(s) 193, 215, 640, 1123
BssECI CCNNGG 3 cut(s) 603, 660, 976
BssMI GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
BssNI GRCGYC 2 cut(s) 5, 1253
BssT1I CCWWGG 1 cut(s) 603
Bst2UI CCWGG 2 cut(s) 630, 826
Bst4CI ACNGT 4 cut(s) 161, 457, 472, 1186
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 2 cut(s) 5, 1253
BstC8I GCNNGC 4 cut(s) 389, 682, 784, 844
BstDEI CTNAG 2 cut(s) 570, 1032
BstDSI CCRYGG 1 cut(s) 660
BstENI CCTNNNNNAGG 1 cut(s) 56
BstF5I GGATG 4 cut(s) 232, 518, 747, 1107
BstFNI CGCG 2 cut(s) 540, 769
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 5 cut(s) 7, 325, 540, 769, 975
BstKTI GATC 7 cut(s) 13, 217, 451, 528, 961, 991, 1047
BstMAI GTCTC 1 cut(s) 843
BstMBI GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
BstMWI GCNNNNNNNGC 4 cut(s) 329, 559, 871, 1169
BstNI CCWGG 2 cut(s) 630, 826
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 3 cut(s) 628, 824, 976
BstSLI GKGCMC 3 cut(s) 1109, 1145, 1174
BstUI CGCG 2 cut(s) 540, 769
BstV2I GAAGAC 1 cut(s) 1187
BstX2I RGATCY 3 cut(s) 214, 958, 1044
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 3 cut(s) 214, 958, 1044
BsuRI GGCC 3 cut(s) 192, 665, 946
BtgI CCRYGG 1 cut(s) 660
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 4 cut(s) 232, 518, 747, 1107
BtsIMutI CAGTG 3 cut(s) 186, 208, 1116
Cac8I GCNNGC 4 cut(s) 389, 682, 784, 844
CaiI CAGNNNCTG 2 cut(s) 635, 1151
CfoI GCGC 5 cut(s) 7, 325, 540, 769, 975
Cfr13I GGNCC 5 cut(s) 95, 520, 623, 771, 1056
CseI GACGC 1 cut(s) 1261
Csp6I GTAC 2 cut(s) 867, 1234
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 5 cut(s) 25, 388, 463, 1049, 1060
CviQI GTAC 2 cut(s) 867, 1234
DdeI CTNAG 2 cut(s) 570, 1032
DinI GGCGCC 1 cut(s) 6
DpnI GATC 7 cut(s) 12, 216, 450, 527, 960, 990, 1046
DpnII GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
EaeI YGGCCR 1 cut(s) 663
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 861
Eco130I CCWWGG 1 cut(s) 603
Eco147I AGGCCT 1 cut(s) 946
Eco47I GGWCC 5 cut(s) 95, 520, 623, 771, 1056
EcoNI CCTNNNNNAGG 1 cut(s) 56
EcoO109I RGGNCCY 1 cut(s) 95
EcoRII CCWGG 2 cut(s) 628, 824
EcoT14I CCWWGG 1 cut(s) 603
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 603
Esp3I CGTCTC 1 cut(s) 843
FaeI CATG 5 cut(s) 28, 391, 466, 1052, 1063
FatI CATG 5 cut(s) 24, 387, 462, 1048, 1059
FauNDI CATATG 1 cut(s) 85
FblI GTMKAC 1 cut(s) 402
FokI GGATG 4 cut(s) 239, 525, 754, 1114
FspBI CTAG 6 cut(s) 45, 194, 650, 654, 738, 956
FspI TGCGCA 1 cut(s) 324
GlaI GCGC 5 cut(s) 6, 324, 539, 768, 974
GsuI CTGGAG 2 cut(s) 612, 1140
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 3 cut(s) 192, 665, 946
HapII CCGG 3 cut(s) 14, 962, 978
HgaI GACGC 1 cut(s) 1261
HhaI GCGC 5 cut(s) 7, 325, 540, 769, 975
Hin1I GRCGYC 2 cut(s) 5, 1253
Hin1II CATG 5 cut(s) 28, 391, 466, 1052, 1063
Hin6I GCGC 5 cut(s) 5, 323, 538, 767, 973
HinP1I GCGC 5 cut(s) 5, 323, 538, 767, 973
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 2 cut(s) 179, 427
HpaII CCGG 3 cut(s) 14, 962, 978
HphI GGTGA 2 cut(s) 557, 1198
Hpy166II GTNNAC 6 cut(s) 403, 886, 1143, 1172, 1216, 1270
Hpy188I TCNGA 8 cut(s) 184, 226, 295, 426, 717, 993, 1035, 1101
Hpy188III TCNNGA 4 cut(s) 14, 749, 760, 956
Hpy8I GTNNAC 6 cut(s) 403, 886, 1143, 1172, 1216, 1270
Hpy99I CGWCG 4 cut(s) 59, 506, 899, 1255
HpyAV CCTTC 6 cut(s) 121, 377, 656, 725, 772, 988
HpyCH4III ACNGT 4 cut(s) 161, 457, 472, 1186
HpyCH4IV ACGT 5 cut(s) 120, 309, 318, 504, 852
HpyCH4V TGCA 8 cut(s) 270, 302, 332, 786, 908, 1052, 1143, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 559, 871, 1169
HpyF3I CTNAG 2 cut(s) 570, 1032
HpySE526I ACGT 5 cut(s) 120, 309, 318, 504, 852
Hsp92I GRCGYC 2 cut(s) 5, 1253
Hsp92II CATG 5 cut(s) 28, 391, 466, 1052, 1063
HspAI GCGC 5 cut(s) 5, 323, 538, 767, 973
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 13
KpnI GGTACC 1 cut(s) 1237
Kzo9I GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
LmnI GCTCC 2 cut(s) 734, 1121
LweI GCATC 7 cut(s) 257, 289, 525, 667, 799, 895, 1198
MaeI CTAG 6 cut(s) 45, 194, 650, 654, 738, 956
MaeII ACGT 5 cut(s) 120, 309, 318, 504, 852
MaeIII GTNAC 3 cut(s) 457, 490, 1186
MalI GATC 7 cut(s) 12, 216, 450, 527, 960, 990, 1046
MboI GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
MboII GAAGA 5 cut(s) 308, 392, 488, 993, 1192
MfeI CAATTG 1 cut(s) 1273
MflI RGATCY 3 cut(s) 214, 958, 1044
MhlI GDGCHC 3 cut(s) 1109, 1145, 1174
MlsI TGGCCA 1 cut(s) 665
MluCI AATT 9 cut(s) 279, 289, 413, 420, 444, 1063, 1111, 1241, 1273
MluNI TGGCCA 1 cut(s) 665
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 476, 706
Mox20I TGGCCA 1 cut(s) 665
MroI TCCGGA 1 cut(s) 13
MscI TGGCCA 1 cut(s) 665
MseI TTAA 5 cut(s) 174, 282, 921, 1041, 1227
MslI CAYNNNNRTG 1 cut(s) 923
Msp20I TGGCCA 1 cut(s) 665
MspI CCGG 3 cut(s) 14, 962, 978
MspR9I CCNGG 3 cut(s) 630, 826, 978
MunI CAATTG 1 cut(s) 1273
MvaI CCWGG 2 cut(s) 630, 826
MvnI CGCG 2 cut(s) 540, 769
MwoI GCNNNNNNNGC 4 cut(s) 329, 559, 871, 1169
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 978
NdeI CATATG 1 cut(s) 85
NdeII GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
NlaIII CATG 5 cut(s) 28, 391, 466, 1052, 1063
NlaIV GGNNCC 5 cut(s) 6, 97, 823, 1123, 1235
NmuCI GTSAC 2 cut(s) 457, 1186
NsbI TGCGCA 1 cut(s) 324
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PceI AGGCCT 1 cut(s) 946
PcsI WCGNNNNNNNCGW 3 cut(s) 60, 315, 351
PfeI GAWTC 2 cut(s) 179, 427
PflMI CCANNNNNTGG 1 cut(s) 635
PfoI TCCNGGA 1 cut(s) 628
PluTI GGCGCC 1 cut(s) 8
PpuMI RGGWCCY 1 cut(s) 95
Psp1406I AACGTT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 628, 824
PspGI CCWGG 2 cut(s) 628, 824
PspN4I GGNNCC 5 cut(s) 6, 97, 823, 1123, 1235
PspPI GGNCC 5 cut(s) 95, 520, 623, 771, 1056
PspPPI RGGWCCY 1 cut(s) 95
PstNI CAGNNNCTG 2 cut(s) 635, 1151
PsuI RGATCY 3 cut(s) 214, 958, 1044
RsaI GTAC 2 cut(s) 868, 1235
RsaNI GTAC 2 cut(s) 867, 1234
RseI CAYNNNNRTG 1 cut(s) 923
SalI GTCGAC 1 cut(s) 401
SaqAI TTAA 5 cut(s) 174, 282, 921, 1041, 1227
Sau3AI GATC 7 cut(s) 10, 214, 448, 525, 958, 988, 1044
Sau96I GGNCC 5 cut(s) 95, 520, 623, 771, 1056
ScrFI CCNGG 3 cut(s) 630, 826, 978
SduI GDGCHC 3 cut(s) 1109, 1145, 1174
SfaNI GCATC 7 cut(s) 257, 289, 525, 667, 799, 895, 1198
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 5 cut(s) 95, 520, 623, 771, 1056
SmiMI CAYNNNNRTG 1 cut(s) 923
SmlI CTYRAG 2 cut(s) 254, 875
SmoI CTYRAG 2 cut(s) 254, 875
SphI GCATGC 1 cut(s) 391
Sse9I AATT 9 cut(s) 279, 289, 413, 420, 444, 1063, 1111, 1241, 1273
SseBI AGGCCT 1 cut(s) 946
SsiI CCGC 2 cut(s) 769, 846
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 6 cut(s) 45, 194, 650, 654, 738, 956
StuI AGGCCT 1 cut(s) 946
StyD4I CCNGG 3 cut(s) 628, 824, 976
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 4 cut(s) 161, 457, 472, 1186
TaiI ACGT 5 cut(s) 123, 312, 321, 507, 855
TaqI TCGA 8 cut(s) 54, 402, 528, 670, 748, 798, 894, 999
TasI AATT 9 cut(s) 279, 289, 413, 420, 444, 1063, 1111, 1241, 1273
TfiI GAWTC 2 cut(s) 179, 427
Tru1I TTAA 5 cut(s) 174, 282, 921, 1041, 1227
Tru9I TTAA 5 cut(s) 174, 282, 921, 1041, 1227
TscAI CASTG 3 cut(s) 193, 215, 1123
TseFI GTSAC 2 cut(s) 457, 1186
Tsp45I GTSAC 2 cut(s) 457, 1186
TspDTI ATGAA 3 cut(s) 41, 676, 1076
TspGWI ACGGA 2 cut(s) 995, 1189
TspRI CASTG 3 cut(s) 193, 215, 1123
Van91I CCANNNNNTGG 1 cut(s) 635
VneI GTGCAC 2 cut(s) 1141, 1170
VpaK11BI GGWCC 5 cut(s) 95, 520, 623, 771, 1056
XagI CCTNNNNNAGG 1 cut(s) 56
XapI RAATTY 3 cut(s) 413, 420, 1241
XbaI TCTAGA 1 cut(s) 955
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 2 cut(s) 118, 469
XmiI GTMKAC 1 cut(s) 402
XspI CTAG 6 cut(s) 45, 194, 650, 654, 738, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.