Rorug05G0435900

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003762
Physical Location & Seq
Reverse (-)
60481565 .. 60495301
13737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0435900.1

Sequence Viewer

Length: 4878 bp
ATGGCCTTGGAATCCCCAACGGCCTCTGCATCACTTTCTACATCAGTTGAATCATCGGCTCCACGGTGGAAGTACGAGGTGTATTTGAGTTTCAGGGGTGAAGACACTGGCCGGGGTTTTACTTCTTATTTATACAATGAATTGCAAAACAGAGAAATCGAGACGTTCATGGACGAAACTAGTTTGGATAGAGGAGTGGGGATTTCTCAAAGTATCCCCGAGGCCATTCAAGAATCAAGATTTGCAATCGTTGTTCTCTCGCCAAATTATGCTTCTTCCAGTTGGTGTTTGGATGAACTCATACAGATTATGCAGTGCATGGACAATAACGAAACAATTCTGCCAGTTTTCTATCATGTGGATCCCTCTGATGTGCGACATCAAAGGGGGAGTTTTGAACGTGCCTTCACTAGACATGAAGAGCGGTTTAAAGATCAAAAACAGAGGCTGATGAAATGGAGAGACGCCTTGAACAAAATCAGCAGCATCTTTGGCTGGGTATGTGGGAGTAGTTATGGGAGTTCTGAGTCAGAAGGACACCTTGTCCAACAAATCGCGGAGTTTGTCTGCAGCAAATCTATTGAGTCGACGGAAGATATTGAAACAAAACAAGCAATGAATGGAACTTCTCCTCGTTGGAAGTATGATGTGTATATAAGTTTCAGGGGTCAGGACACTCGTCAGGGCTTTCTGTCCTATTTACAAGCTGAATTGCAAAATAAACCAGCAAACCTGAAGATAGTAAAGGAAGACGGACCACTTGCAAAAGGGCAGAATATATCTTCGTATCTCCTACAGGCCATGGAAGAGTCGAGGTTTGCCATTGTTGTTCTTTCGCCAAACTTTGCTGCTTCTACATGGTGCTTGGAGGAACTAGCAAAGATTTTTGAATGCATGGGAAGCCAAAATAGAATTCTGCCAATCTTTTATCATGTGGATCCCTCTGCTGTGCGACATCAAAGGGGGAGTTTTGGAGATGCCTTTGCTGTACATGAAGAAAGATTTTGGGATAATCATGAGAAGGTCAGGCGGTGGAGACATGTTTTATCAATGGTGGCCAATCTCTCTGGATGGAGTTCAGAGGTCTATGAGTACGAAGGAAAACTTATCAAAGACGTTGTGAAAGAAGTGTGCAGTAGAATAGTTCAGTCTACAGAGTCGACAGAAGATTTTGAAGCAACAGGAGATAACATGGACCGACCTTCTCCCCAGCCTGACCCAGCTCCTGTGTGGAAGAATGATGTGCTTTCGGGTTCCGGGCTGGAAGACACTCGCAGGGGTTTTGTAGCCCATTCAGACCATGAATTGCAAAACACAGGACTAAGTAAAACATTCAAGGATGAAGACCACCTTGAAAAAGGGGTAGCCCCCCCCCCCTTTGCATCTCTTTCCTCAACTGAACCAAGTCCTCAACCAGCTCTTGGACAGAAGAATGATGAGTTTTTGGGTTTCAGGGGAAACGACACTCAAAGGGGTTCTGTCACCCATTCAGGTCATGAAGTACAAAACACCAGAGTGACTGAGACATTCGCCGATGAAGAACATCTTGAAAAGGGGATAGCTGCCCCCTCTACGTCTCCGCCTTCATCAGCTGAACGAGATCCTCGGCCGAAGTATGATGTGTTTTTGAGTTTCAGGGGGGAAGACACTCGTAGGGGTTTTATAGCCTATCTATACCGTGAATTGCAAAACACCAGAGTGATCAAAACTTTCAAGGATGACGTGCAACTAGAAAAAGGGACGGTCATTGCTTCAAATCTCCTAACGGCAATCGAAGAATCAAGATTTGCGATCATTGTGTTGTCAAAAAATTATGCTTCTTCTTCATGGTGTTTGGATGAACTTGCAAAGATTTTCCGGTGCATGAAAGATAAGAACACAATTTTCCCAATTTTTTATGAGGTGGAACCCACTGATGTACGCCATCAAAAGACAGAGACGAGTTTTGGAAAAGCTTTCATTAAGCAGCACGAAGCTCATGGACAAGACAACGAGAAGATGAAGCAATGGAGTGCTGCTTTAGAAGGAGTGGCAGGAATCGCTGGGTTTCCGTCAAACAAGTATCCGACGGACATAGAACTAATCGAAGACATTGTGAAACATTTGTTGAAGAAAGTACTTCAAGCACCCACCATAAATTTTGAAACATTTGAAGCGACAAGGCAAGCCATGGATGAGGTCATGAAGGTATTAAAAGATGATCAAGTCACTGTCCTTGGGGTGCATGGAGTGGGTGGCGTTGGAAAGACGACGATGGTCAAACATGTTGGTGCACAATCTAAGAAAGATGGGCTTTTTGATCGTGTGATCCCGGTTGTCTTATCCAAAAGCCCCGACTGGGAAGAAATTCAAGGCACATTGGCAGAATCGCTGGGCTTGAAGGAGGGGATCATGAGAGGAAATAGCATGCTCATAATCTTGGACGACATTTGGGAGAGTTTTGAACTCTCGAGCATTGGAATTCCCAGTCACAATGAGCTTCAAAGGTGCAATTCTAAAGTTATACTCATCACAAGGAAAAGCAATGTCTGCGATTCTATGGGGTGCCATGCCCAGATCCCTCTCAATGTTCTGTCAGAGGAAGATTCTTGGAAGTTATTCATGGAGACGTCGGGGAAGTCCTTTCATGAATCTACCATTTCCTATGATGAAGCGAGAAAGGTAGCTCGAGAATGCGGTGGTCTCCCAAAAGCAATAAAAGCAGCTGCAAGGTCACTTGGAGATAAATACTTGGACGAATGGAATGAAGCAGTTGCAAGGGCATTTGGAGATGACTGCTTGGACGAATGGAATGAAACAGCTCATCCTGTCAACTTCGAAGCTGAGGAAGACGCATTTCATTCATTGGCAACTGAAGATGCCAAGTCATGCTTCTTGCTATGCTGCCTATTCCCAGAAAATTATGATATCCCAATTGAAGAGTTGCTCAAGTATGGGATTGGAATAGGTTTGTTTCAATATGATACAATGCAAGAAGCCAGAGATAGAGCACATTCTGTGGTCAAGTACCTCAAAGCTTCTAGATTGCTTTTGGATGGTACAAAGAAGGGATGCATAAGGATGACTGATGACATTCGAAATCTGGCCATGTCCATTGCGTTGTCCGAAGAAGGTGATGGGTTTTTAGTAAAAGCTGGTTGTGAACTAGAGGAGTGGCCAGAGGCAGCATGGTGGCAAGGATTTACTTCCTGGCTCCGCTACAGCTGGGATTGGCCAATAGATGCTCATGAAGGATACTCAACAATCTCACTCATGAAAAATAAGCTACATAAGGTTCCCGAATATTTGGTATGTTCAGAGCTCCAAATTTTATTGTTACAAAGTAATGCCGGTATATCTGACATCCCAGAAACCTTTTTGCAAAGTCCTAATGCGCTAAGGGTCTTTGATCTTAGCTTCACTAGTATTTCATCACTGCCTCCATCATTCAGTTTCCTAACCAACATCCAAGTTTTGAATTTGGATTTTTGCCATAAGTTAAGTAACATATCCGTTCTAGGAAAACTTAAGAAACTTGAGATTCTTAGTATGAGAGAACTTCCTCTTAAGAAATTTCCGAAACAAATAGGAGAATTGACCAGTCTAAGGAAGTTGGACGTCACTGGTAGATATCTTGAAACAATCCCATCTAAAGTGATATCAAGGTTGTATAGATTGGAAGAACTGCACATGAAATTTCAATTTGGGAAGTGGGGAAGTAAAATTGAGGATGCAGTTGAAGAAACCAATGCTGACTTTGATGAGTTGACTGGCTTGTTGGATTTAAACATTTTGGAAGTTTACATATCTGATGCTGCATGCTTGCCTGAAAGTATTGAGTACTTCAAGCCGAATTGGGTAAAATTTGATATATGCATCAGCAGAGACGTCCCTTACGTGCTGCTCCCTCAACATGATGGTCTTTCAAGAACCTTGACTCTTGACACAACAATCAATAGCTTACCGGATTGGTTTATCAGCGTTGTGGCAGAGAAAGTGGAGAAGCTAGAGTACACAAATTGCGAAGACTTGAATGATGTCGTTGGGGAATATGACCATGGCAGATTACTTACACTGAAATATCTCTCTGTGAACGGGAACCGTAAGAACTTAAAAGAGATAATCAACACAATGACACGGGTTTCAAATAAGCCAGTATTTGAGAACTTGGAAGAGTTGCATCTGTACTGCTTATATTCCCTCATTGAGTTATGTGTTGGTGAGCTACCACCTGGGTCTCTACGCAAGCTCAAGTTCTTGAAAGTGCAAACTTGTCGTAGCTTGGTGAATGCACTTTTACCATCAACATTGTTGCAGAGACTACAAAATCTGGAAGAAATCATTTGTATAAATCTGGAAGGAATGAAATATGTATTTGGATCTGATGAAGGGCTTGATCCAGAAAAGATTTTCTTGAGGAAATTGAGGGAGATGAGATTGTCTGCTCTATACAAACTAGTAAGCATATGTAATGGTCCTGCTACGTGTGCAATCTTCCAGAATCTTAAAGTTTTGGCAATTTGCAAGTGCAAGGAATTGAAAAATCTCTTCACAGTTGATGTGGCTGAATGTCTTTTTCAGTTGGAAGACCTTTCCACAGAGCGTTGTCCTAGCTTGGACAGAGTCATTGAAGCAAGCTATAGCTTGAACAGCAAGATTAAACTTCCCACGTTGAAGAAGTTAGCTTTGATAGATCTTCCGGCGCTCACAAGGTTCTGCACTGAAAGTGGTACTATTGAAACTGAGTGCCCTTCATTGGAATACTTGTACGTGGAGAAGTGCCTCCAGTTTTCGTATTTTGCTTACCACTTTGACAACAAGAACCAAGTCCACTTCAATGATAAACAACATTTGAGTTCTTTAGTGAAAAGGTGGGAGGAAGTGCATAATCGGCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

1625

Amino Acids

184.37

Weight (kDa)

5.32

Isoelectric Point (pI)

45.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 24 - 204 3.7e-48 TIR domain
TIR_2 PF13676 27 - 138 2.7e-16 TIR domain
TIR PF01582 214 - 392 5e-46 TIR domain
TIR_2 PF13676 217 - 314 1.1e-10 TIR domain
TIR PF01582 538 - 712 3.8e-46 TIR domain
TIR_2 PF13676 541 - 637 5.7e-13 TIR domain
NB-ARC PF00931 722 - 871 6.4e-25 NB-ARC domain
LRR_8 PF13855 1100 - 1158 7.3e-07 Leucine rich repeat
LRR_14 PF23598 1129 - 1225 1.1e-10 Leucine-rich repeat region
LRR_RPS2 PF23247 1383 - 1529 5.1e-23 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 2612, 3600, 3870
AccB1I GGYRCC 1 cut(s) 2544
AccB7I CCANNNNNTGG 1 cut(s) 1421
AccBSI CCGCTC 1 cut(s) 424
AccI GTMKAC 3 cut(s) 587, 1151, 1160
AccII CGCG 1 cut(s) 557
AciI CCGC 6 cut(s) 424, 557, 1030, 1580, 2676, 3196
AcoI YGGCCR 6 cut(s) 109, 1056, 1607, 3084, 3155, 3212
AcsI RAATTY 9 cut(s) 912, 2137, 2346, 2460, 3306, 3457, 3551, 3674, 3842
AcuI CTGAAG 2 cut(s) 755, 2874
AcyI GRCGYC 4 cut(s) 465, 2609, 3597, 3867
AfiI CCNNNNNNNGG 4 cut(s) 1421, 2338, 3585, 4735
AflII CTTAAG 2 cut(s) 3506, 3545
AflIII ACRYGT 3 cut(s) 1039, 2263, 4463
AhdI GACNNNNNGTC 1 cut(s) 542
AhlI ACTAGT 3 cut(s) 179, 3401, 4435
AjiI CACGTC 1 cut(s) 1723
AjnI CCWGG 2 cut(s) 3188, 4210
AjuI GAANNNNNNNTTGG 6 cut(s) 256, 288, 897, 929, 2855, 2887
AleI CACNNNNGTG 2 cut(s) 1514, 1697
Alw21I GWGCWC 3 cut(s) 2275, 2992, 3303
Alw44I GTGCAC 1 cut(s) 2271
AlwNI CAGNNNCTG 2 cut(s) 448, 1226
Ama87I CYCGRG 3 cut(s) 218, 2449, 2667
ApaLI GTGCAC 1 cut(s) 2271
ApoI RAATTY 9 cut(s) 912, 2137, 2346, 2460, 3306, 3457, 3551, 3674, 3842
Asp700I GAANNNNTTC 3 cut(s) 336, 2346, 2597
AspLEI GCGC 2 cut(s) 3376, 4684
AspS9I GGNCC 3 cut(s) 755, 1195, 4454
AsuC2I CCSGG 3 cut(s) 113, 1258, 2312
AsuHPI GGTGA 5 cut(s) 110, 1474, 3125, 4211, 4276
AsuII TTCGAA 2 cut(s) 2817, 3076
AvaI CYCGRG 3 cut(s) 218, 2449, 2667
AvaII GGWCC 3 cut(s) 755, 1195, 4454
BaeGI GKGCMC 2 cut(s) 2275, 4730
BalI TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
BamHI GGATCC 2 cut(s) 361, 937
BanI GGYRCC 1 cut(s) 2544
BanII GRGCYC 1 cut(s) 3303
BarI GAAGNNNNNNTAC 2 cut(s) 3974, 4006
BbsI GAAGAC 9 cut(s) 108, 756, 1272, 1350, 1650, 2094, 2835, 4011, 4572
Bbv12I GWGCWC 3 cut(s) 2275, 2992, 3303
BbvCI CCTCAGC 1 cut(s) 2823
BceAI ACGGC 2 cut(s) 36, 1782
BcgI CGANNNNNNTGC 2 cut(s) 4235, 4269
BciT130I CCWGG 2 cut(s) 3190, 4212
BciVI GTATCC 3 cut(s) 224, 2073, 3227
BclI TGATCA 2 cut(s) 1701, 2200
BcnI CCSGG 3 cut(s) 113, 1258, 2312
BcuI ACTAGT 3 cut(s) 179, 3401, 4435
BfmI CTRYAG 5 cut(s) 568, 794, 1152, 3199, 4618
BfoI RGCGCY 1 cut(s) 4685
BfrI CTTAAG 2 cut(s) 3506, 3545
BfuI GTATCC 3 cut(s) 224, 2073, 3227
BglII AGATCT 1 cut(s) 4672
BmcAI AGTACT 2 cut(s) 2118, 3821
Bme1390I CCNGG 5 cut(s) 113, 1258, 2312, 3190, 4212
Bme18I GGWCC 3 cut(s) 755, 1195, 4454
BmeRI GACNNNNNGTC 1 cut(s) 542
BmeT110I CYCGRG 3 cut(s) 218, 2449, 2667
BmgBI CACGTC 1 cut(s) 1723
BmgT120I GGNCC 3 cut(s) 755, 1195, 4454
BmiI GGNNCC 9 cut(s) 60, 363, 939, 1255, 1908, 2546, 3194, 3276, 4079
BmrFI CCNGG 5 cut(s) 113, 1258, 2312, 3190, 4212
BmrI ACTGGG 2 cut(s) 2347, 2460
BmuI ACTGGG 2 cut(s) 2347, 2460
BoxI GACNNNNGTC 2 cut(s) 678, 2255
BpiI GAAGAC 9 cut(s) 108, 756, 1272, 1350, 1650, 2094, 2835, 4011, 4572
BpmI CTGGAG 1 cut(s) 4748
Bpu10I CCTNAGC 2 cut(s) 2823, 3377
Bpu14I TTCGAA 2 cut(s) 2817, 3076
BpuEI CTTGAG 4 cut(s) 2912, 3536, 4214, 4414
BpuMI CCSGG 3 cut(s) 113, 1258, 2312
BsaAI YACGTR 3 cut(s) 3877, 4464, 4750
BsaHI GRCGYC 4 cut(s) 465, 2609, 3597, 3867
BsaI GGTCTC 2 cut(s) 2687, 4221
BsaWI WCCGGW 2 cut(s) 1857, 3943
Bsc4I CCNNNNNNNGG 4 cut(s) 1421, 2338, 3585, 4735
Bse118I RCCGGY 1 cut(s) 3329
Bse3DI GCAATG 5 cut(s) 621, 1746, 2012, 2530, 3093
BseBI CCWGG 2 cut(s) 3190, 4212
BseLI CCNNNNNNNGG 4 cut(s) 1421, 2338, 3585, 4735
BseMI GCAATG 5 cut(s) 621, 1746, 2012, 2530, 3093
BseMII CTCAG 4 cut(s) 516, 1512, 2814, 4713
BseRI GAGGAG 3 cut(s) 207, 621, 3164
BseSI GKGCMC 2 cut(s) 2275, 4730
BseX3I CGGCCG 1 cut(s) 1607
BseYI CCCAGC 6 cut(s) 495, 1209, 1219, 2042, 2371, 3204
BsgI GTGCAG 3 cut(s) 1153, 3650, 4681
Bsh1236I CGCG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 1610
BshNI GGYRCC 1 cut(s) 2544
BsiEI CGRYCG 1 cut(s) 1610
BsiHKAI GWGCWC 3 cut(s) 2275, 2992, 3303
BsiHKCI CYCGRG 3 cut(s) 218, 2449, 2667
BsiSI CCGG 7 cut(s) 112, 1257, 1858, 2312, 3330, 3944, 4679
BslFI GGGAC 2 cut(s) 1753, 3854
BslI CCNNNNNNNGG 4 cut(s) 1421, 2338, 3585, 4735
BsmBI CGTCTC 6 cut(s) 155, 456, 1581, 1931, 2600, 3858
BsmFI GGGAC 2 cut(s) 1753, 3854
BsmI GAATGC 3 cut(s) 896, 2678, 4273
Bso31I GGTCTC 2 cut(s) 2687, 4221
BsoBI CYCGRG 3 cut(s) 218, 2449, 2667
Bsp119I TTCGAA 2 cut(s) 2817, 3076
Bsp1286I GDGCHC 4 cut(s) 2275, 2992, 3303, 4730
Bsp1407I TGTACA 1 cut(s) 988
Bsp19I CCATGG 3 cut(s) 801, 2169, 4036
BspACI CCGC 6 cut(s) 424, 557, 1030, 1580, 2676, 3196
BspCNI CTCAG 4 cut(s) 517, 1513, 2815, 4714
BspFNI CGCG 1 cut(s) 557
BspHI TCATGA 7 cut(s) 1015, 1495, 2181, 2391, 2626, 3226, 3252
BspLI GGNNCC 9 cut(s) 60, 363, 939, 1255, 1908, 2546, 3194, 3276, 4079
BspMAI CTGCAG 1 cut(s) 572
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 2 cut(s) 2817, 3076
BspT107I GGYRCC 1 cut(s) 2544
BspTI CTTAAG 2 cut(s) 3506, 3545
BspTNI GGTCTC 2 cut(s) 2687, 4221
BsrBI CCGCTC 1 cut(s) 424
BsrDI GCAATG 5 cut(s) 621, 1746, 2012, 2530, 3093
BsrFI RCCGGY 1 cut(s) 3329
BsrGI TGTACA 1 cut(s) 988
BssAI RCCGGY 1 cut(s) 3329
BssNI GRCGYC 4 cut(s) 465, 2609, 3597, 3867
BssT1I CCWWGG 5 cut(s) 6, 801, 2169, 2215, 4036
Bst2UI CCWGG 2 cut(s) 3190, 4212
Bst4CI ACNGT 6 cut(s) 66, 1679, 1744, 2212, 4082, 4534
Bst6I CTCTTC 5 cut(s) 414, 801, 2913, 4146, 4532
BstACI GRCGYC 4 cut(s) 465, 2609, 3597, 3867
BstAFI CTTAAG 2 cut(s) 3506, 3545
BstAPI GCANNNNNTGC 1 cut(s) 2529
BstAUI TGTACA 1 cut(s) 988
BstBAI YACGTR 3 cut(s) 3877, 4464, 4750
BstBI TTCGAA 2 cut(s) 2817, 3076
BstC8I GCNNGC 6 cut(s) 2166, 2408, 3799, 3803, 4226, 4615
BstDSI CCRYGG 4 cut(s) 62, 801, 2169, 4036
BstFNI CGCG 1 cut(s) 557
BstH2I RGCGCY 1 cut(s) 4685
BstHHI GCGC 2 cut(s) 3376, 4684
BstMCI CGRYCG 1 cut(s) 1610
BstMWI GCNNNNNNNGC 8 cut(s) 492, 900, 2039, 2529, 2699, 4466, 4629, 4870
BstNI CCWGG 2 cut(s) 3190, 4212
BstNSI RCATGY 4 cut(s) 1043, 2267, 2410, 3801
BstPAI GACNNNNGTC 2 cut(s) 678, 2255
BstSCI CCNGG 5 cut(s) 111, 1256, 2310, 3188, 4210
BstSFI CTRYAG 5 cut(s) 568, 794, 1152, 3199, 4618
BstSLI GKGCMC 2 cut(s) 2275, 4730
BstUI CGCG 1 cut(s) 557
BstV2I GAAGAC 9 cut(s) 108, 756, 1272, 1350, 1650, 2094, 2835, 4011, 4572
BstX2I RGATCY 6 cut(s) 361, 937, 1600, 2556, 4358, 4672
BstYI RGATCY 6 cut(s) 361, 937, 1600, 2556, 4358, 4672
BstZI CGGCCG 1 cut(s) 1607
BsuI GTATCC 3 cut(s) 224, 2073, 3227
BtgI CCRYGG 4 cut(s) 62, 801, 2169, 4036
BtrI CACGTC 1 cut(s) 1723
BtsI GCAGTG 2 cut(s) 320, 3413
BtsIMutI CAGTG 8 cut(s) 105, 320, 1911, 2208, 3413, 3600, 4052, 4698
Cac8I GCNNGC 6 cut(s) 2166, 2408, 3799, 3803, 4226, 4615
CaiI CAGNNNCTG 2 cut(s) 448, 1226
CciI TCATGA 7 cut(s) 1015, 1495, 2181, 2391, 2626, 3226, 3252
CfoI GCGC 2 cut(s) 3376, 4684
Cfr10I RCCGGY 1 cut(s) 3329
Cfr13I GGNCC 3 cut(s) 755, 1195, 4454
CseI GACGC 2 cut(s) 473, 2840
DraI TTTAAA 2 cut(s) 430, 3765
DriI GACNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 6 cut(s) 109, 1056, 1607, 3084, 3155, 3212
EagI CGGCCG 1 cut(s) 1607
Eam1104I CTCTTC 5 cut(s) 414, 801, 2913, 4146, 4532
Eam1105I GACNNNNNGTC 1 cut(s) 542
EarI CTCTTC 5 cut(s) 414, 801, 2913, 4146, 4532
EciI GGCGGA 1 cut(s) 1569
Ecl136II GAGCTC 1 cut(s) 3301
EclXI CGGCCG 1 cut(s) 1607
Eco130I CCWWGG 5 cut(s) 6, 801, 2169, 2215, 4036
Eco24I GRGCYC 1 cut(s) 3303
Eco31I GGTCTC 2 cut(s) 2687, 4221
Eco32I GATATC 3 cut(s) 2908, 3611, 3639
Eco47I GGWCC 3 cut(s) 755, 1195, 4454
Eco52I CGGCCG 1 cut(s) 1607
Eco53kI GAGCTC 1 cut(s) 3301
Eco57I CTGAAG 2 cut(s) 755, 2874
Eco88I CYCGRG 3 cut(s) 218, 2449, 2667
EcoICRI GAGCTC 1 cut(s) 3301
EcoRI GAATTC 2 cut(s) 912, 2460
EcoRII CCWGG 2 cut(s) 3188, 4210
EcoRV GATATC 3 cut(s) 2908, 3611, 3639
EcoT14I CCWWGG 5 cut(s) 6, 801, 2169, 2215, 4036
EcoT22I ATGCAT 3 cut(s) 896, 3056, 3857
EcoT38I GRGCYC 1 cut(s) 3303
ErhI CCWWGG 5 cut(s) 6, 801, 2169, 2215, 4036
Esp3I CGTCTC 6 cut(s) 155, 456, 1581, 1931, 2600, 3858
FaqI GGGAC 2 cut(s) 1753, 3854
FauNDI CATATG 1 cut(s) 4445
FbaI TGATCA 2 cut(s) 1701, 2200
FblI GTMKAC 3 cut(s) 587, 1151, 1160
FriOI GRGCYC 1 cut(s) 3303
GlaI GCGC 2 cut(s) 3375, 4683
GsaI CCCAGC 6 cut(s) 499, 1213, 1223, 2046, 2375, 3208
GsuI CTGGAG 1 cut(s) 4748
HaeII RGCGCY 1 cut(s) 4685
HapII CCGG 7 cut(s) 112, 1257, 1858, 2312, 3330, 3944, 4679
HgaI GACGC 2 cut(s) 473, 2840
HhaI GCGC 2 cut(s) 3376, 4684
Hin1I GRCGYC 4 cut(s) 465, 2609, 3597, 3867
Hin6I GCGC 2 cut(s) 3374, 4682
HinP1I GCGC 2 cut(s) 3374, 4682
HincII GTYRAC 4 cut(s) 588, 1161, 2812, 3747
HindII GTYRAC 4 cut(s) 588, 1161, 2812, 3747
HindIII AAGCTT 2 cut(s) 1953, 3015
HpaII CCGG 7 cut(s) 112, 1257, 1858, 2312, 3330, 3944, 4679
HphI GGTGA 5 cut(s) 110, 1474, 3125, 4211, 4276
Hpy99I CGWCG 4 cut(s) 592, 2071, 2254, 2614
HpyCH4III ACNGT 6 cut(s) 66, 1679, 1744, 2212, 4082, 4534
HpyF10VI GCNNNNNNNGC 8 cut(s) 492, 900, 2039, 2529, 2699, 4466, 4629, 4870
Hsp92I GRCGYC 4 cut(s) 465, 2609, 3597, 3867
HspAI GCGC 2 cut(s) 3374, 4682
Ksp22I TGATCA 2 cut(s) 1701, 2200
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 5 cut(s) 64, 1228, 3198, 3306, 3888
MaeIII GTNAC 8 cut(s) 1480, 1516, 2206, 2468, 2712, 3315, 3482, 3598
MbiI CCGCTC 1 cut(s) 424
MfeI CAATTG 1 cut(s) 2913
MflI RGATCY 6 cut(s) 361, 937, 1600, 2556, 4358, 4672
MhlI GDGCHC 4 cut(s) 2275, 2992, 3303, 4730
MlsI TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
MluNI TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
MlyI GAGTC 6 cut(s) 536, 593, 818, 1166, 3910, 4611
MmeI TCCRAC 7 cut(s) 571, 617, 2090, 2221, 3573, 3738, 4542
Mox20I TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
Mph1103I ATGCAT 3 cut(s) 896, 3056, 3857
MroXI GAANNNNTTC 3 cut(s) 336, 2346, 2597
MscI TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
MslI CAYNNNNRTG 5 cut(s) 1514, 1697, 2268, 3059, 4815
Msp20I TGGCCA 4 cut(s) 1058, 3086, 3157, 3214
MspA1I CMGCKG 3 cut(s) 1592, 2705, 3204
MspCI CTTAAG 2 cut(s) 3506, 3545
MspI CCGG 7 cut(s) 112, 1257, 1858, 2312, 3330, 3944, 4679
MspR9I CCNGG 5 cut(s) 113, 1258, 2312, 3190, 4212
MunI CAATTG 1 cut(s) 2913
Mva1269I GAATGC 3 cut(s) 896, 2678, 4273
MvaI CCWGG 2 cut(s) 3190, 4212
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 8 cut(s) 492, 900, 2039, 2529, 2699, 4466, 4629, 4870
NciI CCSGG 3 cut(s) 113, 1258, 2312
NcoI CCATGG 3 cut(s) 801, 2169, 4036
NdeI CATATG 1 cut(s) 4445
NlaIV GGNNCC 9 cut(s) 60, 363, 939, 1255, 1908, 2546, 3194, 3276, 4079
NmeAIII GCCGAG 1 cut(s) 1585
NmuCI GTSAC 6 cut(s) 1480, 1516, 2206, 2468, 2712, 3598
NsiI ATGCAT 3 cut(s) 896, 3056, 3857
NspI RCATGY 4 cut(s) 1043, 2267, 2410, 3801
NspV TTCGAA 2 cut(s) 2817, 3076
OliI CACNNNNGTG 2 cut(s) 1514, 1697
PaeI GCATGC 2 cut(s) 2410, 3801
PaeR7I CTCGAG 2 cut(s) 2449, 2667
PagI TCATGA 7 cut(s) 1015, 1495, 2181, 2391, 2626, 3226, 3252
PciI ACATGT 2 cut(s) 1039, 2263
PciSI GCTCTTC 1 cut(s) 414
PcsI WCGNNNNNNNCGW 1 cut(s) 3873
PctI GAATGC 3 cut(s) 896, 2678, 4273
PdmI GAANNNNTTC 3 cut(s) 336, 2346, 2597
PflFI GACNNNGTC 1 cut(s) 4601
PflMI CCANNNNNTGG 1 cut(s) 1421
PleI GAGTC 6 cut(s) 535, 592, 817, 1165, 3910, 4610
PpsI GAGTC 6 cut(s) 535, 592, 817, 1165, 3910, 4610
Ppu21I YACGTR 3 cut(s) 3877, 4464, 4750
PscI ACATGT 2 cut(s) 1039, 2263
PshAI GACNNNNGTC 2 cut(s) 678, 2255
Psp124BI GAGCTC 1 cut(s) 3303
Psp6I CCWGG 2 cut(s) 3188, 4210
PspFI CCCAGC 6 cut(s) 495, 1209, 1219, 2042, 2371, 3204
PspGI CCWGG 2 cut(s) 3188, 4210
PspN4I GGNNCC 9 cut(s) 60, 363, 939, 1255, 1908, 2546, 3194, 3276, 4079
PspPI GGNCC 3 cut(s) 755, 1195, 4454
PstI CTGCAG 1 cut(s) 572
PstNI CAGNNNCTG 2 cut(s) 448, 1226
PsuI RGATCY 6 cut(s) 361, 937, 1600, 2556, 4358, 4672
PsyI GACNNNGTC 1 cut(s) 4601
PvuII CAGCTG 3 cut(s) 1592, 2705, 3204
RseI CAYNNNNRTG 5 cut(s) 1514, 1697, 2268, 3059, 4815
SacI GAGCTC 1 cut(s) 3303
SalI GTCGAC 2 cut(s) 586, 1159
SapI GCTCTTC 1 cut(s) 414
Sau96I GGNCC 3 cut(s) 755, 1195, 4454
ScaI AGTACT 2 cut(s) 2118, 3821
SchI GAGTC 6 cut(s) 536, 593, 818, 1166, 3910, 4611
ScrFI CCNGG 5 cut(s) 113, 1258, 2312, 3190, 4212
SduI GDGCHC 4 cut(s) 2275, 2992, 3303, 4730
SfcI CTRYAG 5 cut(s) 568, 794, 1152, 3199, 4618
Sfr274I CTCGAG 2 cut(s) 2449, 2667
SfuI TTCGAA 2 cut(s) 2817, 3076
SinI GGWCC 3 cut(s) 755, 1195, 4454
SlaI CTCGAG 2 cut(s) 2449, 2667
SmiMI CAYNNNNRTG 5 cut(s) 1514, 1697, 2268, 3059, 4815
SmlI CTYRAG 8 cut(s) 2449, 2667, 2927, 3506, 3515, 3545, 4229, 4393
SmoI CTYRAG 8 cut(s) 2449, 2667, 2927, 3506, 3515, 3545, 4229, 4393
SpeI ACTAGT 3 cut(s) 179, 3401, 4435
SphI GCATGC 2 cut(s) 2410, 3801
SsiI CCGC 6 cut(s) 424, 557, 1030, 1580, 2676, 3196
SspI AATATT 1 cut(s) 3284
SstI GAGCTC 1 cut(s) 3303
StyD4I CCNGG 5 cut(s) 111, 1256, 2310, 3188, 4210
StyI CCWWGG 5 cut(s) 6, 801, 2169, 2215, 4036
TaaI ACNGT 6 cut(s) 66, 1679, 1744, 2212, 4082, 4534
TaqII GACCGA 1 cut(s) 1212
TatI WGTACW 6 cut(s) 988, 1501, 2116, 3819, 3990, 4164
TscAI CASTG 8 cut(s) 112, 320, 1918, 2215, 3420, 3607, 4059, 4705
TseFI GTSAC 6 cut(s) 1480, 1516, 2206, 2468, 2712, 3598
Tsp45I GTSAC 6 cut(s) 1480, 1516, 2206, 2468, 2712, 3598
TspGWI ACGGA 5 cut(s) 605, 768, 2040, 2084, 3481
TspRI CASTG 8 cut(s) 112, 320, 1918, 2215, 3420, 3607, 4059, 4705
Tth111I GACNNNGTC 1 cut(s) 4601
Van91I CCANNNNNTGG 1 cut(s) 1421
Vha464I CTTAAG 2 cut(s) 3506, 3545
VneI GTGCAC 1 cut(s) 2271
VpaK11BI GGWCC 3 cut(s) 755, 1195, 4454
XapI RAATTY 9 cut(s) 912, 2137, 2346, 2460, 3306, 3457, 3551, 3674, 3842
XbaI TCTAGA 1 cut(s) 3020
XceI RCATGY 4 cut(s) 1043, 2267, 2410, 3801
XcmI CCANNNNNNNNNTGG 3 cut(s) 286, 1227, 3165
XhoI CTCGAG 2 cut(s) 2449, 2667
XmiI GTMKAC 3 cut(s) 587, 1151, 1160
XmnI GAANNNNTTC 3 cut(s) 336, 2346, 2597
ZraI GACGTC 3 cut(s) 2610, 3598, 3868
ZrmI AGTACT 2 cut(s) 2118, 3821
Zsp2I ATGCAT 3 cut(s) 896, 3056, 3857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.