Prupe.3G030100_v2.0.a1

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
2251951 .. 2255211
3261 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G030100.1

Sequence Viewer

Length: 1278 bp
ATGGCGCCAGAACCTGAAGACATCAAGGACGAGAAGAACCCTAGACCGCTTGACGAGGACGACATCGCCCTCCTCAAGACCTATGGGTTAGGGCCTTATTCAACACATATTAAGAAAGCCGAGAAGGAAGTCAAGGATTTGGCTAAGAAGGTCAATGATTTGTGTGGTATTAAGGAGTCTGATACTGGCTTAGCTGCACCCAGCCAGTGGGATCTTGTTTCTGACAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGGTTGCAAGATGTACGAAGATAATCAATCCCAATTCTGAGGATGCTAAATACGTCATTAATGTCAAGCAAATTGCAAAGTTTGTTGTTGGGCTGGGTGACAAGGTTTCTCCAACTGATATAGAAGAAGGCATGCGTGTGGGGGTTGACAGGAACAAGTATCAAATTCAGATTCCTTTGCCTCCAAAGATCGATCCAAGTGTGACCATGATGACGGTGGAAGAGAAGCCAGATGTAACATATAATGATGTTGGTGGATGCAAGGAGCAGATTGAAAAGATGCGAGAAGTTGTGGAGCTGCCAATGCTTCACCCCGAGAAGTTTGTGAAGCTCGGAATTGATCCTCCAAAGGGTGTCCTCTGTTATGGTCCTCCAGGAACCGGTAAAACACTTCTAGCTAGGGCTGTCGCTAATAGAACTGATGCTTGCTTCATTCGTGTTATTGGGAGTGAGCTTGTTCAGAAATATGTCGGTGAGGGCGCTAGGATGGTTCGTGAGCTCTTTCAGATGGCACGCTCAAAAAAGGCCTGTATTGTATTTTTCGATGAAGTTGATGCCATAGGAGGAGCTCGCTTTGATGATGGTGTGGGTGGAGACAATGAGGTTCAGCGTACAATGCTTGAAATTGTGAATCAACTTGATGGGTTTGATGCTCGTGGAAACATCAAAGTTTTAATGGCAACAAACAGGCCCGACACACTAGACCCAGCACTGTTACGTCCGGGACGATTGGATCGTAAGGTTGAGTTTGGCCTCCCTGATTTGGAGAGTAGAACTCAGATATTTAAGATCCATACACGAACAATGAACTGTGAAAGAGATATTAGGTTTGAACTACTGGCTCGGCTCTGCCCAAATTCAACTGGGGCTGATATAAGAAGCGTGTGCACTGAAGCTGGAATGTACGCCATCCGTGCACGAAGGAAGACAGTAACAGAGAAGGATTTCCTTGATGCTGTGAACAAAGTGATTAAGGGGTACCAGAAGTTCAGTGCAACACCGAAGTATATGGTTTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.56

Weight (kDa)

6.43

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1233
AccB1I GGYRCC 2 cut(s) 4, 1233
AccB7I CCANNNNNTGG 1 cut(s) 207
AciI CCGC 1 cut(s) 47
AclWI GGATC 5 cut(s) 219, 443, 590, 996, 1039
AcsI RAATTY 2 cut(s) 420, 1111
AcuI CTGAAG 3 cut(s) 36, 239, 1167
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 4 cut(s) 271, 868, 1160, 1235
AfiI CCNNNNNNNGG 4 cut(s) 207, 605, 635, 1018
AgeI ACCGGT 1 cut(s) 635
AgsI TTSAA 5 cut(s) 102, 530, 878, 1088, 1116
AjnI CCWGG 1 cut(s) 628
AluBI AGCT 8 cut(s) 194, 553, 586, 653, 709, 754, 824, 1151
AluI AGCT 8 cut(s) 194, 553, 586, 653, 709, 754, 824, 1151
Alw21I GWGCWC 4 cut(s) 756, 826, 1145, 1174
Alw26I GTCTC 1 cut(s) 843
Alw44I GTGCAC 2 cut(s) 1141, 1170
AlwI GGATC 5 cut(s) 219, 443, 590, 996, 1039
AlwNI CAGNNNCTG 1 cut(s) 14
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 4 cut(s) 92, 780, 944, 1006
ApaLI GTGCAC 2 cut(s) 1141, 1170
ApeKI GCWGC 3 cut(s) 194, 247, 553
ApoI RAATTY 2 cut(s) 420, 1111
AseI ATTAAT 1 cut(s) 315
AsiGI ACCGGT 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 1199
Asp718I GGTACC 1 cut(s) 1233
AspLEI GCGC 2 cut(s) 7, 737
AspS9I GGNCC 3 cut(s) 92, 623, 945
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 3 cut(s) 365, 557, 740
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 1 cut(s) 623
BaeGI GKGCMC 2 cut(s) 1145, 1174
BanI GGYRCC 2 cut(s) 4, 1233
BanII GRGCYC 2 cut(s) 756, 826
BauI CACGAG 1 cut(s) 909
BbsI GAAGAC 2 cut(s) 24, 1187
Bbv12I GWGCWC 4 cut(s) 756, 826, 1145, 1174
BbvI GCAGC 3 cut(s) 181, 259, 540
BccI CCATC 5 cut(s) 736, 757, 830, 890, 1172
BciT130I CCWGG 1 cut(s) 630
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 1 cut(s) 843
BfaI CTAG 5 cut(s) 42, 650, 654, 738, 956
BfoI RGCGCY 2 cut(s) 8, 738
BisI GCNGC 3 cut(s) 195, 248, 554
BlpI GCTNAGC 1 cut(s) 190
BlsI GCNGC 3 cut(s) 196, 249, 555
Bme1390I CCNGG 2 cut(s) 630, 978
Bme18I GGWCC 1 cut(s) 623
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 3 cut(s) 92, 623, 945
BmiI GGNNCC 3 cut(s) 6, 634, 1235
BmrFI CCNGG 2 cut(s) 630, 978
BmrI ACTGGG 1 cut(s) 1128
BmsI GCATC 8 cut(s) 225, 289, 503, 525, 667, 799, 895, 1198
BmuI ACTGGG 1 cut(s) 1128
BpiI GAAGAC 2 cut(s) 24, 1187
BplI GAGNNNNNCTC 2 cut(s) 1015, 1047
BpmI CTGGAG 1 cut(s) 612
Bpu1102I GCTNAGC 1 cut(s) 190
BpuEI CTTGAG 1 cut(s) 59
BpuMI CCSGG 1 cut(s) 978
Bsa29I ATCGAT 1 cut(s) 447
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 635
Bsc4I CCNNNNNNNGG 4 cut(s) 207, 605, 635, 1018
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 4 cut(s) 190, 205, 1098, 1123
BseBI CCWGG 1 cut(s) 630
BseCI ATCGAT 1 cut(s) 447
BseGI GGATG 4 cut(s) 304, 518, 747, 1164
BseLI CCNNNNNNNGG 4 cut(s) 207, 605, 635, 1018
BseMII CTCAG 2 cut(s) 285, 1046
BseNI ACTGG 4 cut(s) 190, 205, 1098, 1123
BseRI GAGGAG 3 cut(s) 62, 257, 834
BseSI GKGCMC 2 cut(s) 1145, 1174
BseXI GCAGC 3 cut(s) 181, 259, 540
BseYI CCCAGC 3 cut(s) 200, 349, 961
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 4 cut(s) 94, 782, 946, 1008
BshNI GGYRCC 2 cut(s) 4, 1233
BshTI ACCGGT 1 cut(s) 635
BshVI ATCGAT 1 cut(s) 447
BsiHKAI GWGCWC 4 cut(s) 756, 826, 1145, 1174
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 2 cut(s) 636, 977
BslFI GGGAC 1 cut(s) 993
BslI CCNNNNNNNGG 4 cut(s) 207, 605, 635, 1018
BsmAI GTCTC 1 cut(s) 843
BsmFI GGGAC 1 cut(s) 993
BsnI GGCC 4 cut(s) 94, 782, 946, 1008
BsoBI CYCGRG 1 cut(s) 569
Bsp1286I GDGCHC 4 cut(s) 756, 826, 1145, 1174
Bsp143I GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
Bsp1720I GCTNAGC 1 cut(s) 190
BspACI CCGC 1 cut(s) 47
BspANI GGCC 4 cut(s) 94, 782, 946, 1008
BspCNI CTCAG 2 cut(s) 286, 1045
BspDI ATCGAT 1 cut(s) 447
BspLI GGNNCC 3 cut(s) 6, 634, 1235
BspPI GGATC 5 cut(s) 219, 443, 590, 996, 1039
BspT107I GGYRCC 2 cut(s) 4, 1233
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 4 cut(s) 190, 205, 1098, 1123
BssAI RCCGGY 1 cut(s) 635
BssMI GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
BssNI GRCGYC 1 cut(s) 5
BssSI CACGAG 1 cut(s) 909
Bst2BI CACGAG 1 cut(s) 909
Bst2UI CCWGG 1 cut(s) 630
Bst4CI ACNGT 4 cut(s) 472, 969, 1067, 1186
Bst6I CTCTTC 2 cut(s) 258, 471
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 235
BstC8I GCNNGC 4 cut(s) 389, 682, 769, 826
BstDEI CTNAG 4 cut(s) 144, 190, 294, 1032
BstF5I GGATG 4 cut(s) 304, 518, 747, 1164
BstH2I RGCGCY 2 cut(s) 8, 738
BstHHI GCGC 2 cut(s) 7, 737
BstKTI GATC 6 cut(s) 214, 447, 451, 598, 991, 1047
BstMAI GTCTC 1 cut(s) 843
BstMBI GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
BstMWI GCNNNNNNNGC 5 cut(s) 235, 244, 559, 871, 1169
BstNI CCWGG 1 cut(s) 630
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 628, 976
BstSLI GKGCMC 2 cut(s) 1145, 1174
BstV1I GCAGC 3 cut(s) 181, 259, 540
BstV2I GAAGAC 2 cut(s) 24, 1187
BstX2I RGATCY 2 cut(s) 211, 1044
BstYI RGATCY 2 cut(s) 211, 1044
Bsu15I ATCGAT 1 cut(s) 447
BsuRI GGCC 4 cut(s) 94, 782, 946, 1008
BsuTUI ATCGAT 1 cut(s) 447
BtgZI GCGATG 1 cut(s) 49
BtsCI GGATG 4 cut(s) 304, 518, 747, 1164
BtsIMutI CAGTG 4 cut(s) 212, 965, 1143, 1252
Cac8I GCNNGC 4 cut(s) 389, 682, 769, 826
CaiI CAGNNNCTG 1 cut(s) 14
CfoI GCGC 2 cut(s) 7, 737
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 92, 623, 945
ClaI ATCGAT 1 cut(s) 447
Csp6I GTAC 4 cut(s) 270, 867, 1159, 1234
CspAI ACCGGT 1 cut(s) 635
CviAII CATG 2 cut(s) 388, 463
CviQI GTAC 4 cut(s) 270, 867, 1159, 1234
DdeI CTNAG 4 cut(s) 144, 190, 294, 1032
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 213, 446, 450, 597, 990, 1046
DpnII GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
Eam1104I CTCTTC 2 cut(s) 258, 471
EarI CTCTTC 2 cut(s) 258, 471
Ecl136II GAGCTC 2 cut(s) 754, 824
Eco147I AGGCCT 1 cut(s) 782
Eco24I GRGCYC 2 cut(s) 756, 826
Eco47I GGWCC 1 cut(s) 623
Eco53kI GAGCTC 2 cut(s) 754, 824
Eco57I CTGAAG 3 cut(s) 36, 239, 1167
Eco88I CYCGRG 1 cut(s) 569
EcoICRI GAGCTC 2 cut(s) 754, 824
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 628
EcoT38I GRGCYC 2 cut(s) 756, 826
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
FaeI CATG 2 cut(s) 391, 466
FaqI GGGAC 1 cut(s) 993
FatI CATG 2 cut(s) 387, 462
Fnu4HI GCNGC 3 cut(s) 195, 248, 554
FokI GGATG 4 cut(s) 311, 525, 754, 1151
FriOI GRGCYC 2 cut(s) 756, 826
Fsp4HI GCNGC 3 cut(s) 195, 248, 554
FspBI CTAG 5 cut(s) 42, 650, 654, 738, 956
GlaI GCGC 2 cut(s) 6, 736
GluI GCNGC 3 cut(s) 195, 248, 554
GsaI CCCAGC 3 cut(s) 204, 353, 965
GsuI CTGGAG 1 cut(s) 612
HaeII RGCGCY 2 cut(s) 8, 738
HaeIII GGCC 4 cut(s) 94, 782, 946, 1008
HapII CCGG 2 cut(s) 636, 977
HhaI GCGC 2 cut(s) 7, 737
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 391, 466
Hin6I GCGC 2 cut(s) 5, 735
HinP1I GCGC 2 cut(s) 5, 735
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HinfI GANTC 3 cut(s) 176, 427, 886
HpaII CCGG 2 cut(s) 636, 977
HphI GGTGA 3 cut(s) 365, 557, 740
Hpy166II GTNNAC 5 cut(s) 403, 1143, 1172, 1216, 1270
Hpy188I TCNGA 8 cut(s) 181, 223, 295, 426, 590, 717, 762, 1035
Hpy188III TCNNGA 2 cut(s) 76, 749
Hpy8I GTNNAC 5 cut(s) 403, 1143, 1172, 1216, 1270
HpyAV CCTTC 5 cut(s) 118, 142, 377, 1170, 1189
HpyCH4III ACNGT 4 cut(s) 472, 969, 1067, 1186
HpyCH4IV ACGT 2 cut(s) 309, 973
HpyCH4V TGCA 8 cut(s) 197, 238, 263, 332, 516, 1143, 1172, 1250
HpyF10VI GCNNNNNNNGC 5 cut(s) 235, 244, 559, 871, 1169
HpyF3I CTNAG 4 cut(s) 144, 190, 294, 1032
HpySE526I ACGT 2 cut(s) 309, 973
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 391, 466
HspAI GCGC 2 cut(s) 5, 735
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 1237
Kzo9I GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
LmnI GCTCC 4 cut(s) 244, 520, 550, 821
Lsp1109I GCAGC 3 cut(s) 181, 259, 540
LweI GCATC 8 cut(s) 225, 289, 503, 525, 667, 799, 895, 1198
MaeI CTAG 5 cut(s) 42, 650, 654, 738, 956
MaeII ACGT 2 cut(s) 309, 973
MaeIII GTNAC 5 cut(s) 353, 457, 490, 969, 1186
MalI GATC 6 cut(s) 213, 446, 450, 597, 990, 1046
MboI GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
MboII GAAGA 7 cut(s) 29, 46, 245, 286, 392, 488, 1192
MflI RGATCY 2 cut(s) 211, 1044
MhlI GDGCHC 4 cut(s) 756, 826, 1145, 1174
MluCI AATT 6 cut(s) 289, 327, 420, 591, 879, 1111
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 1 cut(s) 185
MmeI TCCRAC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 1199
MseI TTAA 6 cut(s) 111, 171, 315, 929, 1041, 1227
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 2 cut(s) 636, 977
MspR9I CCNGG 2 cut(s) 630, 978
MvaI CCWGG 1 cut(s) 630
MwoI GCNNNNNNNGC 5 cut(s) 235, 244, 559, 871, 1169
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 978
NdeII GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
NlaIII CATG 2 cut(s) 391, 466
NlaIV GGNNCC 3 cut(s) 6, 634, 1235
NmeAIII GCCGAG 2 cut(s) 145, 1078
NmuCI GTSAC 2 cut(s) 353, 457
NspI RCATGY 1 cut(s) 391
PaeI GCATGC 1 cut(s) 391
PceI AGGCCT 1 cut(s) 782
PcsI WCGNNNNNNNCGW 2 cut(s) 979, 988
PdmI GAANNNNTTC 1 cut(s) 1199
PfeI GAWTC 2 cut(s) 427, 886
PflMI CCANNNNNTGG 1 cut(s) 207
PfoI TCCNGGA 2 cut(s) 628, 976
PinAI ACCGGT 1 cut(s) 635
PkrI GCNGC 3 cut(s) 196, 249, 555
PleI GAGTC 1 cut(s) 184
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 184
PshBI ATTAAT 1 cut(s) 315
Psp124BI GAGCTC 2 cut(s) 756, 826
Psp6I CCWGG 1 cut(s) 628
PspFI CCCAGC 3 cut(s) 200, 349, 961
PspGI CCWGG 1 cut(s) 628
PspN4I GGNNCC 3 cut(s) 6, 634, 1235
PspPI GGNCC 3 cut(s) 92, 623, 945
PsrI GAACNNNNNNTAC 2 cut(s) 1226, 1258
PstNI CAGNNNCTG 1 cut(s) 14
PsuI RGATCY 2 cut(s) 211, 1044
RsaI GTAC 4 cut(s) 271, 868, 1160, 1235
RsaNI GTAC 4 cut(s) 270, 867, 1159, 1234
RseI CAYNNNNRTG 1 cut(s) 392
SacI GAGCTC 2 cut(s) 756, 826
SaqAI TTAA 6 cut(s) 111, 171, 315, 929, 1041, 1227
SatI GCNGC 3 cut(s) 195, 248, 554
Sau3AI GATC 6 cut(s) 211, 444, 448, 595, 988, 1044
Sau96I GGNCC 3 cut(s) 92, 623, 945
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 2 cut(s) 630, 978
SduI GDGCHC 4 cut(s) 756, 826, 1145, 1174
SfaNI GCATC 8 cut(s) 225, 289, 503, 525, 667, 799, 895, 1198
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 391
Sse9I AATT 6 cut(s) 289, 327, 420, 591, 879, 1111
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 1 cut(s) 47
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 5 cut(s) 42, 650, 654, 738, 956
SstI GAGCTC 2 cut(s) 756, 826
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 2 cut(s) 628, 976
TaaI ACNGT 4 cut(s) 472, 969, 1067, 1186
TaiI ACGT 2 cut(s) 312, 976
TaqI TCGA 2 cut(s) 447, 798
TasI AATT 6 cut(s) 289, 327, 420, 591, 879, 1111
TfiI GAWTC 2 cut(s) 427, 886
Tru1I TTAA 6 cut(s) 111, 171, 315, 929, 1041, 1227
Tru9I TTAA 6 cut(s) 111, 171, 315, 929, 1041, 1227
TscAI CASTG 4 cut(s) 212, 972, 1150, 1252
TseFI GTSAC 2 cut(s) 353, 457
TseI GCWGC 3 cut(s) 194, 247, 553
Tsp45I GTSAC 2 cut(s) 353, 457
TspDTI ATGAA 3 cut(s) 676, 816, 1076
TspGWI ACGGA 1 cut(s) 1157
TspRI CASTG 4 cut(s) 212, 972, 1150, 1252
Van91I CCANNNNNTGG 1 cut(s) 207
VneI GTGCAC 2 cut(s) 1141, 1170
VpaK11BI GGWCC 1 cut(s) 623
VspI ATTAAT 1 cut(s) 315
XapI RAATTY 2 cut(s) 420, 1111
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 469
XmnI GAANNNNTTC 1 cut(s) 1199
XspI CTAG 5 cut(s) 42, 650, 654, 738, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.