Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Forward (+)

35707355 .. 35711779

Gene Structure 4425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g42730.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGTTTAAATATCTGCAAAGGGAACCGACAGAAGAGAAGATGGGAATTCCTGATCCAGAAGCGATCAAGCAGTTTCAGTTGTTAATGGAGGAAGTTGATGAGCCGCTGAAGAACACATTTGAGAATGTGCACCAAGGGTATCCCGATGAGACATTTGTGCGGTTTCTTAAAGCGAGGGACTGGAATGTCGGCAAAGCCCACAAAATGTTGGTTGACTGTTTGCAATGGAGAATAGACAGTGAAATTGACAATATATTGGCGAAACCAATCATACCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTTTGGGACTGTCTGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTGTTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAATTACTATGTTCAGTCGCACATCCAGATGAATGAATACCGAGATCGTGTAGTTTTACCTTCTGCAACAAAGAAGTATGGCAAATATATTGGAACTTGTGTGAAAGTTTTGGACATGACTGGCTTAAGGCTGTCGGCGCTTAATCATATTAAGCTATTGACTGTTACCTCCACAATCGATGACTTAAATTATCCAGAGAAGACAGATACATACTATATTGTCAATGCCCCATACATATTCTCAGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGGACAAGGAAGAAAATCCAGGTTCTCCAAGGTTGTGGGAAAGATGAGTTACTCAAAATCATGGATTATTCGTCCCTCCCACATTTTTGTAGAAAACAGGGTTCTGGATCATCTCGGAATTCGGAGAATGGACATACTAGTAACTGTTTCTCCTTGGACCATGCTTACCATCAAGAGCTCTACAATCTTGTTAAGCAGCAAGCAATGCGCATGGAGTGTGTGGCACCAATCAAACAGGGTTCCTTCCATGTCAATTTCCCGGATCCAAACCCAGATGACGCAGAGATTGCGAAAACCATAGAGGCTGAGTTTCACAAGTATGGAAACCACAATGGCCTCACCAAGTCACTAAGTGGCCTAAGATTAAACGGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

351

Amino Acids

39.88

Weight (kDa)

7.61

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	21 - 72	3.2e-13	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	102 - 221	7.1e-10	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	185
Acc16I	TGCGCA	1 cut(s)	884
AccB1I	GGYRCC	1 cut(s)	898
AciI	CCGC	2 cut(s)	104, 160
AclWI	GGATC	4 cut(s)	47, 790, 932, 945
AcsI	RAATTY	2 cut(s)	45, 793
AcuI	CTGAAG	1 cut(s)	128
AdeI	CACNNNGTG	1 cut(s)	1028
AfaI	GTAC	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	520
AhlI	ACTAGT	1 cut(s)	812
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	4 cut(s)	310, 389, 550, 853
AluI	AGCT	4 cut(s)	310, 389, 550, 853
Alw21I	GWGCWC	2 cut(s)	132, 855
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	4 cut(s)	47, 790, 932, 945
AoxI	GGCC	2 cut(s)	1009, 1030
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	871
ApoI	RAATTY	2 cut(s)	45, 793
AspLEI	GCGC	2 cut(s)	535, 885
AspS9I	GGNCC	1 cut(s)	832
AsuC2I	CCSGG	1 cut(s)	935
AsuHPI	GGTGA	1 cut(s)	1006
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	937
BanI	GGYRCC	1 cut(s)	898
BanII	GRGCYC	2 cut(s)	372, 855
BbsI	GAAGAC	2 cut(s)	335, 602
Bbv12I	GWGCWC	2 cut(s)	132, 855
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	2 cut(s)	34, 852
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	935
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	1 cut(s)	813
BfoI	RGCGCY	1 cut(s)	536
BfrI	CTTAAG	1 cut(s)	520
BfuI	GTATCC	1 cut(s)	150
BisI	GCNGC	2 cut(s)	104, 872
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	105, 873
Bme1390I	CCNGG	2 cut(s)	695, 935
Bme18I	GGWCC	1 cut(s)	832
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	4 cut(s)	24, 900, 916, 939
BmrFI	CCNGG	2 cut(s)	695, 935
BpiI	GAAGAC	2 cut(s)	335, 602
Bpu1102I	GCTNAGC	1 cut(s)	371
BpuMI	CCSGG	1 cut(s)	935
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	133, 703, 828
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bse1I	ACTGG	2 cut(s)	185, 520
Bse3DI	GCAATG	3 cut(s)	230, 351, 885
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	3 cut(s)	133, 703, 828
BseGI	GGATG	1 cut(s)	417
BseMI	GCAATG	3 cut(s)	230, 351, 885
BseMII	CTCAG	4 cut(s)	320, 385, 651, 972
BseNI	ACTGG	2 cut(s)	185, 520
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	883
BshFI	GGCC	2 cut(s)	1011, 1032
BshNI	GGYRCC	1 cut(s)	898
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	132, 855
BsiSI	CCGG	1 cut(s)	935
BslFI	GGGAC	3 cut(s)	191, 330, 733
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	3 cut(s)	191, 330, 733
BsnI	GGCC	2 cut(s)	1011, 1032
Bsp1286I	GDGCHC	3 cut(s)	132, 372, 855
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	5 cut(s)	52, 63, 439, 782, 937
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	104, 160
BspANI	GGCC	2 cut(s)	1011, 1032
BspCNI	CTCAG	4 cut(s)	319, 384, 650, 973
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	4 cut(s)	24, 900, 916, 939
BspPI	GGATC	4 cut(s)	47, 790, 932, 945
BspT107I	GGYRCC	1 cut(s)	898
BspTI	CTTAAG	1 cut(s)	520
BsrDI	GCAATG	3 cut(s)	230, 351, 885
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	185, 520
BssECI	CCNNGG	3 cut(s)	133, 703, 828
BssMI	GATC	5 cut(s)	52, 63, 439, 782, 937
BssT1I	CCWWGG	3 cut(s)	133, 703, 828
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	6 cut(s)	218, 239, 321, 559, 821, 1046
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	2 cut(s)	880, 962
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	6 cut(s)	306, 371, 637, 981, 1025, 1034
BstF5I	GGATG	1 cut(s)	417
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	535, 885
BstKTI	GATC	5 cut(s)	55, 66, 442, 785, 940
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	5 cut(s)	52, 63, 439, 782, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	532, 880, 962
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	693, 933
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	2 cut(s)	335, 602
BstX2I	RGATCY	1 cut(s)	937
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	1 cut(s)	937
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	1011, 1032
BsuTUI	ATCGAT	1 cut(s)	573
BtsCI	GGATG	1 cut(s)	417
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	2 cut(s)	244, 300
Cac8I	GCNNGC	1 cut(s)	876
CfoI	GCGC	2 cut(s)	535, 885
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	6 cut(s)	511, 642, 736, 836, 886, 923
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	6 cut(s)	306, 371, 637, 981, 1025, 1034
DpnI	GATC	5 cut(s)	54, 65, 441, 784, 939
DpnII	GATC	5 cut(s)	52, 63, 439, 782, 937
DraI	TTTAAA	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	1028
DrdI	GACNNNNNNGTC	1 cut(s)	185
DseDI	GACNNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	3 cut(s)	133, 703, 828
Eco24I	GRGCYC	2 cut(s)	372, 855
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	2 cut(s)	45, 793
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	3 cut(s)	133, 703, 828
EcoT38I	GRGCYC	2 cut(s)	372, 855
ErhI	CCWWGG	3 cut(s)	133, 703, 828
FaeI	CATG	6 cut(s)	514, 645, 739, 839, 889, 926
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	3 cut(s)	191, 330, 733
FatI	CATG	6 cut(s)	510, 641, 735, 835, 885, 922
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	104, 872
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	2 cut(s)	372, 855
Fsp4HI	GCNGC	2 cut(s)	104, 872
FspAI	RTGCGCAY	1 cut(s)	884
FspBI	CTAG	1 cut(s)	813
FspI	TGCGCA	1 cut(s)	884
GlaI	GCGC	2 cut(s)	534, 884
GluI	GCNGC	2 cut(s)	104, 872
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	1011, 1032
HapII	CCGG	1 cut(s)	935
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	2 cut(s)	535, 885
Hin1II	CATG	6 cut(s)	514, 645, 739, 839, 889, 926
Hin6I	GCGC	2 cut(s)	533, 883
HinP1I	GCGC	2 cut(s)	533, 883
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	935
HphI	GGTGA	1 cut(s)	1006
Hpy166II	GTNNAC	2 cut(s)	130, 214
Hpy188I	TCNGA	2 cut(s)	792, 799
Hpy188III	TCNNGA	8 cut(s)	50, 56, 143, 421, 590, 780, 848, 1050
Hpy8I	GTNNAC	2 cut(s)	130, 214
HpyAV	CCTTC	3 cut(s)	465, 643, 928
HpyCH4III	ACNGT	6 cut(s)	218, 239, 321, 559, 821, 1046
HpyCH4V	TGCA	5 cut(s)	16, 130, 223, 461, 670
HpyF10VI	GCNNNNNNNGC	3 cut(s)	532, 880, 962
HpyF3I	CTNAG	6 cut(s)	306, 371, 637, 981, 1025, 1034
Hsp92II	CATG	6 cut(s)	514, 645, 739, 839, 889, 926
HspAI	GCGC	2 cut(s)	533, 883
Kzo9I	GATC	5 cut(s)	52, 63, 439, 782, 937
Lsp1109I	GCAGC	1 cut(s)	883
MaeI	CTAG	1 cut(s)	813
MaeIII	GTNAC	5 cut(s)	326, 559, 723, 815, 1020
MalI	GATC	5 cut(s)	54, 65, 441, 784, 939
MboI	GATC	5 cut(s)	52, 63, 439, 782, 937
MboII	GAAGA	6 cut(s)	44, 49, 121, 335, 607, 697
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	3 cut(s)	132, 372, 855
MluCI	AATT	6 cut(s)	45, 243, 397, 583, 793, 928
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	8 cut(s)	82, 168, 331, 574, 672, 761, 970, 1022
MseI	TTAA	9 cut(s)	6, 83, 168, 521, 537, 546, 581, 867, 1040
MslI	CAYNNNNRTG	2 cut(s)	422, 993
MspA1I	CMGCKG	1 cut(s)	106
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	1 cut(s)	935
MspR9I	CCNGG	2 cut(s)	695, 935
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	3 cut(s)	532, 880, 962
NciI	CCSGG	1 cut(s)	935
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	5 cut(s)	52, 63, 439, 782, 937
NlaIII	CATG	6 cut(s)	514, 645, 739, 839, 889, 926
NlaIV	GGNNCC	4 cut(s)	24, 900, 916, 939
NmuCI	GTSAC	1 cut(s)	1020
NsbI	TGCGCA	1 cut(s)	884
NspI	RCATGY	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	302
PfoI	TCCNGGA	1 cut(s)	933
PkrI	GCNGC	2 cut(s)	105, 873
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	4 cut(s)	24, 900, 916, 939
PspPI	GGNCC	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	422, 993
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	9 cut(s)	6, 83, 168, 521, 537, 546, 581, 867, 1040
SatI	GCNGC	2 cut(s)	104, 872
Sau3AI	GATC	5 cut(s)	52, 63, 439, 782, 937
Sau96I	GGNCC	1 cut(s)	832
ScrFI	CCNGG	2 cut(s)	695, 935
SduI	GDGCHC	3 cut(s)	132, 372, 855
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	2 cut(s)	422, 993
SmlI	CTYRAG	1 cut(s)	520
SmoI	CTYRAG	1 cut(s)	520
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	6 cut(s)	45, 243, 397, 583, 793, 928
SsiI	CCGC	2 cut(s)	104, 160
SspMI	CTAG	1 cut(s)	813
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	693, 933
StyI	CCWWGG	3 cut(s)	133, 703, 828
TaaI	ACNGT	6 cut(s)	218, 239, 321, 559, 821, 1046
TaqI	TCGA	1 cut(s)	573
TasI	AATT	6 cut(s)	45, 243, 397, 583, 793, 928
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	9 cut(s)	6, 83, 168, 521, 537, 546, 581, 867, 1040
Tru9I	TTAA	9 cut(s)	6, 83, 168, 521, 537, 546, 581, 867, 1040
TscAI	CASTG	2 cut(s)	244, 300
TseFI	GTSAC	1 cut(s)	1020
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	1 cut(s)	1020
TspDTI	ATGAA	2 cut(s)	440, 444
TspRI	CASTG	2 cut(s)	244, 300
Vha464I	CTTAAG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	2 cut(s)	45, 793
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.