Rh5DG536400

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009845
Physical Location & Seq
Forward (+)
82765901 .. 82770217
4317 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG536400.1

Sequence Viewer

Length: 843 bp
ATGTTGGTTGACTGTTTGCAATGGAGGATAGACAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTTTGGGATTGTCTGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAATTACTATGTTCAGTCGCACATCCAAATGAATGAATACCGAGATCGTGTAGTTTTACCTGCTGCAACAAAGAAGTATGGCAAATATATTGGAACCTGTGTGAAAGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAATCATATTAAGCTTTTGACTGTTATTTCCACTATCGATGACTTGAATTATCCAGAAAAGACGGATACATACTATATTGTCAATGCCCCATACATATTTTCAGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGGACTAGGAGGAAAATCCAGGTTCTTCAAGGATGTGGGAAAGATGAATTACTGAAAATCATGGATTATTCGTCCCTCCCACATTTTTGTAGAAGACAGGGCTCTGGATCATCTCGGAATTCAGAGAATGGACATACTAGTAATTGTTTCTCGTTGGACCATGCTTTCCATCAAGAGCTCTACAATTTTGTCAAGCAGCAAGCTATTCAAACGGAGTGTGTTGCACCAATCAAACAAGGATCCTTCCACGTCAATTTCCCTGATCCAAACCCTGATGACGCAGAGATAGCGAAAACCATAGAGTCTGAGTTCCACAAGTATGGAAACGGCCTCACCAAGTCACTAAGTGGCCTAAGATTTAACGGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

280

Amino Acids

31.56

Weight (kDa)

8.36

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 34 - 186 5.8e-19 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 259
AclWI GGATC 4 cut(s) 586, 705, 718, 728
AcsI RAATTY 1 cut(s) 589
AdeI CACNNNGTG 1 cut(s) 818
AfaI GTAC 1 cut(s) 83
AgsI TTSAA 3 cut(s) 379, 500, 680
AhlI ACTAGT 1 cut(s) 608
AjiI CACGTC 1 cut(s) 721
AjnI CCWGG 1 cut(s) 489
AluBI AGCT 5 cut(s) 106, 185, 346, 649, 674
AluI AGCT 5 cut(s) 106, 185, 346, 649, 674
Alw21I GWGCWC 1 cut(s) 651
AlwI GGATC 4 cut(s) 586, 705, 718, 728
AoxI GGCC 2 cut(s) 799, 820
ApeKI GCWGC 2 cut(s) 254, 667
ApoI RAATTY 1 cut(s) 589
AspS9I GGNCC 1 cut(s) 628
AsuHPI GGTGA 1 cut(s) 796
AvaII GGWCC 1 cut(s) 628
BamHI GGATCC 1 cut(s) 710
BanII GRGCYC 3 cut(s) 168, 575, 651
BbsI GAAGAC 2 cut(s) 131, 571
Bbv12I GWGCWC 1 cut(s) 651
BbvI GCAGC 2 cut(s) 241, 679
BccI CCATC 1 cut(s) 648
BceAI ACGGC 1 cut(s) 814
BciT130I CCWGG 1 cut(s) 491
BciVI GTATCC 1 cut(s) 391
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 2 cut(s) 477, 609
BfuAI ACCTGC 1 cut(s) 259
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 2 cut(s) 255, 668
BlpI GCTNAGC 1 cut(s) 167
BlsI GCNGC 2 cut(s) 256, 669
Bme1390I CCNGG 1 cut(s) 491
Bme18I GGWCC 1 cut(s) 628
BmgBI CACGTC 1 cut(s) 721
BmgT120I GGNCC 1 cut(s) 628
BmiI GGNNCC 2 cut(s) 286, 712
BmrFI CCNGG 1 cut(s) 491
BpiI GAAGAC 2 cut(s) 131, 571
Bpu1102I GCTNAGC 1 cut(s) 167
Bsa29I ATCGAT 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 316
Bse3DI GCAATG 2 cut(s) 26, 147
BseBI CCWGG 1 cut(s) 491
BseCI ATCGAT 1 cut(s) 369
BseGI GGATG 3 cut(s) 66, 213, 509
BseMI GCAATG 2 cut(s) 26, 147
BseMII CTCAG 4 cut(s) 116, 181, 339, 768
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 241, 679
BshFI GGCC 2 cut(s) 801, 822
BshVI ATCGAT 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 651
BslFI GGGAC 1 cut(s) 529
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 2 cut(s) 801, 822
Bsp1286I GDGCHC 3 cut(s) 168, 575, 651
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 4 cut(s) 235, 578, 710, 733
Bsp1720I GCTNAGC 1 cut(s) 167
BspANI GGCC 2 cut(s) 801, 822
BspCNI CTCAG 4 cut(s) 115, 180, 338, 769
BspDI ATCGAT 1 cut(s) 369
BspLI GGNNCC 2 cut(s) 286, 712
BspMI ACCTGC 1 cut(s) 259
BspPI GGATC 4 cut(s) 586, 705, 718, 728
BsrDI GCAATG 2 cut(s) 26, 147
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 316
BssMI GATC 4 cut(s) 235, 578, 710, 733
Bst2UI CCWGG 1 cut(s) 491
Bst4CI ACNGT 3 cut(s) 14, 355, 836
BstAUI TGTACA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 672
BstDEI CTNAG 6 cut(s) 102, 167, 325, 777, 815, 824
BstF5I GGATG 3 cut(s) 66, 213, 509
BstKTI GATC 4 cut(s) 238, 581, 713, 736
BstMBI GATC 4 cut(s) 235, 578, 710, 733
BstMWI GCNNNNNNNGC 1 cut(s) 758
BstNI CCWGG 1 cut(s) 491
BstNSI RCATGY 1 cut(s) 441
BstSCI CCNGG 1 cut(s) 489
BstV1I GCAGC 2 cut(s) 241, 679
BstV2I GAAGAC 2 cut(s) 131, 571
BstX2I RGATCY 1 cut(s) 710
BstXI CCANNNNNNTGG 1 cut(s) 791
BstYI RGATCY 1 cut(s) 710
Bsu15I ATCGAT 1 cut(s) 369
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 2 cut(s) 801, 822
BsuTUI ATCGAT 1 cut(s) 369
BtrI CACGTC 1 cut(s) 721
BtsCI GGATG 3 cut(s) 66, 213, 509
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 672
Cfr13I GGNCC 1 cut(s) 628
ClaI ATCGAT 1 cut(s) 369
CseI GACGC 1 cut(s) 758
Csp6I GTAC 1 cut(s) 82
CviAII CATG 3 cut(s) 438, 532, 632
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 6 cut(s) 102, 167, 325, 777, 815, 824
DpnI GATC 4 cut(s) 237, 580, 712, 735
DpnII GATC 4 cut(s) 235, 578, 710, 733
DraIII CACNNNGTG 1 cut(s) 818
Ecl136II GAGCTC 1 cut(s) 649
Eco24I GRGCYC 3 cut(s) 168, 575, 651
Eco47I GGWCC 1 cut(s) 628
Eco53kI GAGCTC 1 cut(s) 649
EcoICRI GAGCTC 1 cut(s) 649
EcoRI GAATTC 1 cut(s) 589
EcoRII CCWGG 1 cut(s) 489
EcoT38I GRGCYC 3 cut(s) 168, 575, 651
FaeI CATG 3 cut(s) 441, 535, 635
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 529
FatI CATG 3 cut(s) 437, 531, 631
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 2 cut(s) 255, 668
FokI GGATG 3 cut(s) 53, 200, 516
FriOI GRGCYC 3 cut(s) 168, 575, 651
Fsp4HI GCNGC 2 cut(s) 255, 668
FspBI CTAG 2 cut(s) 477, 609
GluI GCNGC 2 cut(s) 255, 668
HaeIII GGCC 2 cut(s) 801, 822
HgaI GACGC 1 cut(s) 758
Hin1II CATG 3 cut(s) 441, 535, 635
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 2 cut(s) 183, 344
HinfI GANTC 2 cut(s) 98, 773
HphI GGTGA 1 cut(s) 796
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 3 cut(s) 588, 595, 778
Hpy188III TCNNGA 4 cut(s) 386, 576, 644, 840
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 439, 724
HpyCH4III ACNGT 3 cut(s) 14, 355, 836
HpyCH4IV ACGT 1 cut(s) 720
HpyCH4V TGCA 4 cut(s) 19, 257, 466, 695
HpyF10VI GCNNNNNNNGC 1 cut(s) 758
HpyF3I CTNAG 6 cut(s) 102, 167, 325, 777, 815, 824
HpySE526I ACGT 1 cut(s) 720
Hsp92II CATG 3 cut(s) 441, 535, 635
Kzo9I GATC 4 cut(s) 235, 578, 710, 733
Lsp1109I GCAGC 2 cut(s) 241, 679
MaeI CTAG 2 cut(s) 477, 609
MaeII ACGT 1 cut(s) 720
MaeIII GTNAC 2 cut(s) 122, 810
MalI GATC 4 cut(s) 237, 580, 712, 735
MboI GATC 4 cut(s) 235, 578, 710, 733
MboII GAAGA 3 cut(s) 131, 488, 576
MflI RGATCY 1 cut(s) 710
MhlI GDGCHC 3 cut(s) 168, 575, 651
MluCI AATT 8 cut(s) 39, 193, 379, 518, 589, 613, 655, 724
MlyI GAGTC 1 cut(s) 782
MmeI TCCRAC 2 cut(s) 422, 606
MnlI CCTC 6 cut(s) 18, 127, 468, 474, 557, 812
MseI TTAA 4 cut(s) 317, 333, 342, 831
MslI CAYNNNNRTG 2 cut(s) 218, 789
MspR9I CCNGG 1 cut(s) 491
MvaI CCWGG 1 cut(s) 491
MwoI GCNNNNNNNGC 1 cut(s) 758
NdeI CATATG 1 cut(s) 175
NdeII GATC 4 cut(s) 235, 578, 710, 733
NlaIII CATG 3 cut(s) 441, 535, 635
NlaIV GGNNCC 2 cut(s) 286, 712
NmuCI GTSAC 1 cut(s) 810
NspI RCATGY 1 cut(s) 441
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 256, 669
PleI GAGTC 1 cut(s) 781
PpsI GAGTC 1 cut(s) 781
Psp124BI GAGCTC 1 cut(s) 651
Psp6I CCWGG 1 cut(s) 489
PspGI CCWGG 1 cut(s) 489
PspN4I GGNNCC 2 cut(s) 286, 712
PspPI GGNCC 1 cut(s) 628
PsuI RGATCY 1 cut(s) 710
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 2 cut(s) 218, 789
SacI GAGCTC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 317, 333, 342, 831
SatI GCNGC 2 cut(s) 255, 668
Sau3AI GATC 4 cut(s) 235, 578, 710, 733
Sau96I GGNCC 1 cut(s) 628
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 1 cut(s) 491
SduI GDGCHC 3 cut(s) 168, 575, 651
SinI GGWCC 1 cut(s) 628
SmiMI CAYNNNNRTG 2 cut(s) 218, 789
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 8 cut(s) 39, 193, 379, 518, 589, 613, 655, 724
SspMI CTAG 2 cut(s) 477, 609
SstI GAGCTC 1 cut(s) 651
StyD4I CCNGG 1 cut(s) 489
TaaI ACNGT 3 cut(s) 14, 355, 836
TaiI ACGT 1 cut(s) 723
TaqI TCGA 1 cut(s) 369
TasI AATT 8 cut(s) 39, 193, 379, 518, 589, 613, 655, 724
TatI WGTACW 1 cut(s) 81
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 4 cut(s) 317, 333, 342, 831
Tru9I TTAA 4 cut(s) 317, 333, 342, 831
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 810
TseI GCWGC 2 cut(s) 254, 667
Tsp45I GTSAC 1 cut(s) 810
TspDTI ATGAA 3 cut(s) 236, 240, 531
TspGWI ACGGA 2 cut(s) 410, 698
TspRI CASTG 1 cut(s) 96
VpaK11BI GGWCC 1 cut(s) 628
XapI RAATTY 1 cut(s) 589
XceI RCATGY 1 cut(s) 441
XspI CTAG 2 cut(s) 477, 609
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.