Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2833606 .. 2838321

Gene Structure 4716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1032700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGGTGTTGCCAATCAAGAGGCTATCAAGCAGTTTCGATTGTTAATGGAAGAAGTTGATGAGCCACTGAAGAATACATTTGAGAATGTACACCAAGGGTATCCAAATGAGACATTAATGCGTTTTCTTAAAGCTCGGGACATGAATGTTGGAAAAGCCCACAAAATGTTGCTTGATTGTTTACAATGGAGGATGGACAGCGAAATCGACAATATATTGGCGAAACCAATCATCCCAACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTGTGGGGTTGTCAGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTGTTGGTGTCGGGCAAAGCACATTTGACAAAGCTTCTGTAAATTACTATGTCCAGTCTCACATCCAAATGAACGAGTATAGAGATCGTGTTGTGTTGCCTTCTGCAACGAAGAAGTATGGACAATATATTGGGACGTGTGTGAAGGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAACCAGATAAAGCTATTGACTGTTATCTCTACAATAGACGACTTAAACTATCCAGAGAAGACGGATACATACTATATTGTCAATGTGCCATACATATTTTCGGCATGTTGGAAGGTGGTAAAGCCTCTTTTGCAAGAAAGAACAAGGAAGAAAATCCAGGTTCTTCAGGGTTGTGGCAGAGACGAATTACTGAAAATCATGGATTATGCATCCCTCCCACATTTTTGTAGAAAAGAGGGATCCGGGTCATCTCGGCATTCTGACAACGGACGCACTAACAATTGTTTCTCCTTGGACCATCCATTCCATCAAGAGCTCTACAATTTCGTCAAGCAACAAGCCGTCTTGAGGGAGTCCATTGCACCAATCAAGCAGGGATCCTTCCATGTTAATTTCCCGGAAGCTGCCCCAGAAGGCGCCGAGATTGCAAGGAAAATAGAATCTGAATTCCACAAGTTCGGAAATCAAAATCAAAATGGTCTCACCAAGTCACTAAGTGGCCTAAGAGTTCATGGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

340

Amino Acids

38.45

Weight (kDa)

8.73

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	8 - 59	5.7e-10	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	89 - 241	1.6e-18	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	914, 1013
AclWI	GGATC	4 cut(s)	732, 745, 870, 883
AcsI	RAATTY	1 cut(s)	944
AcuI	CTGAAG	2 cut(s)	89, 647
AcyI	GRCGYC	1 cut(s)	915
AdeI	CACNNNGTG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	90, 248
AfiI	CCNNNNNNNGG	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	452
AjiI	CACGTC	1 cut(s)	453
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 902
AluI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 902
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	4 cut(s)	104, 378, 672, 983
AlwI	GGATC	4 cut(s)	732, 745, 870, 883
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	997
ApeKI	GCWGC	1 cut(s)	902
ApoI	RAATTY	1 cut(s)	944
AseI	ATTAAT	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	793
AsuC2I	CCSGG	2 cut(s)	742, 896
AsuHPI	GGTGA	1 cut(s)	973
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	1 cut(s)	793
BamHI	GGATCC	2 cut(s)	737, 875
BanI	GGYRCC	2 cut(s)	914, 1013
BanII	GRGCYC	1 cut(s)	816
BbsI	GAAGAC	2 cut(s)	296, 563
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	1 cut(s)	889
BccI	CCATC	3 cut(s)	187, 804, 813
BceAI	ACGGC	1 cut(s)	824
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	2 cut(s)	111, 556
BcnI	CCSGG	2 cut(s)	742, 896
BcoDI	GTCTC	4 cut(s)	104, 378, 672, 983
BfoI	RGCGCY	1 cut(s)	918
BfuI	GTATCC	2 cut(s)	111, 556
BisI	GCNGC	1 cut(s)	903
BlsI	GCNGC	1 cut(s)	904
Bme1390I	CCNGG	3 cut(s)	656, 742, 896
Bme18I	GGWCC	1 cut(s)	793
BmeT110I	CYCGRG	1 cut(s)	135
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	793
BmiI	GGNNCC	4 cut(s)	739, 877, 916, 1015
BmrFI	CCNGG	3 cut(s)	656, 742, 896
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	296, 563
BpuEI	CTTGAG	1 cut(s)	865
BpuMI	CCSGG	2 cut(s)	742, 896
BsaHI	GRCGYC	1 cut(s)	915
BsaI	GGTCTC	1 cut(s)	983
BsaJI	CCNNGG	2 cut(s)	94, 789
Bsc4I	CCNNNNNNNGG	1 cut(s)	846
Bse1I	ACTGG	2 cut(s)	370, 481
Bse3DI	GCAATG	2 cut(s)	312, 855
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	2 cut(s)	94, 789
BseGI	GGATG	5 cut(s)	198, 231, 378, 707, 796
BseLI	CCNNNNNNNGG	1 cut(s)	846
BseMI	GCAATG	2 cut(s)	312, 855
BseMII	CTCAG	2 cut(s)	281, 504
BseNI	ACTGG	2 cut(s)	370, 481
BseXI	GCAGC	1 cut(s)	889
BshFI	GGCC	1 cut(s)	999
BshNI	GGYRCC	2 cut(s)	914, 1013
BsiHKAI	GWGCWC	1 cut(s)	816
BsiHKCI	CYCGRG	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	741, 896
BslFI	GGGAC	2 cut(s)	152, 463
BslI	CCNNNNNNNGG	1 cut(s)	846
BsmAI	GTCTC	4 cut(s)	104, 378, 672, 983
BsmBI	CGTCTC	1 cut(s)	672
BsmFI	GGGAC	2 cut(s)	152, 463
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	999
Bso31I	GGTCTC	1 cut(s)	983
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp1407I	TGTACA	2 cut(s)	88, 246
Bsp143I	GATC	3 cut(s)	400, 737, 875
BspANI	GGCC	1 cut(s)	999
BspCNI	CTCAG	2 cut(s)	280, 503
BspLI	GGNNCC	4 cut(s)	739, 877, 916, 1015
BspPI	GGATC	4 cut(s)	732, 745, 870, 883
BspT107I	GGYRCC	2 cut(s)	914, 1013
BspTNI	GGTCTC	1 cut(s)	983
BsrDI	GCAATG	2 cut(s)	312, 855
BsrGI	TGTACA	2 cut(s)	88, 246
BsrI	ACTGG	2 cut(s)	370, 481
BssECI	CCNNGG	2 cut(s)	94, 789
BssMI	GATC	3 cut(s)	400, 737, 875
BssNI	GRCGYC	1 cut(s)	915
BssT1I	CCWWGG	2 cut(s)	94, 789
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	1 cut(s)	520
BstACI	GRCGYC	1 cut(s)	915
BstAUI	TGTACA	2 cut(s)	88, 246
BstDEI	CTNAG	4 cut(s)	267, 490, 992, 1001
BstF5I	GGATG	5 cut(s)	198, 231, 378, 707, 796
BstH2I	RGCGCY	1 cut(s)	918
BstHHI	GCGC	1 cut(s)	917
BstKTI	GATC	3 cut(s)	403, 740, 878
BstMAI	GTCTC	4 cut(s)	104, 378, 672, 983
BstMBI	GATC	3 cut(s)	400, 737, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 923
BstNI	CCWGG	1 cut(s)	656
BstNSI	RCATGY	1 cut(s)	606
BstSCI	CCNGG	3 cut(s)	654, 740, 894
BstV1I	GCAGC	1 cut(s)	889
BstV2I	GAAGAC	2 cut(s)	296, 563
BstX2I	RGATCY	2 cut(s)	737, 875
BstYI	RGATCY	2 cut(s)	737, 875
BsuI	GTATCC	2 cut(s)	111, 556
BsuRI	GGCC	1 cut(s)	999
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	5 cut(s)	198, 231, 378, 707, 796
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	65, 261
CfoI	GCGC	1 cut(s)	917
Cfr13I	GGNCC	1 cut(s)	793
CseI	GACGC	1 cut(s)	777
Csp6I	GTAC	2 cut(s)	89, 247
CviAII	CATG	5 cut(s)	142, 603, 697, 884, 1010
CviQI	GTAC	2 cut(s)	89, 247
DdeI	CTNAG	4 cut(s)	267, 490, 992, 1001
DinI	GGCGCC	1 cut(s)	916
DpnI	GATC	3 cut(s)	402, 739, 877
DpnII	GATC	3 cut(s)	400, 737, 875
DraIII	CACNNNGTG	1 cut(s)	995
Ecl136II	GAGCTC	1 cut(s)	814
Eco130I	CCWWGG	2 cut(s)	94, 789
Eco24I	GRGCYC	1 cut(s)	816
Eco31I	GGTCTC	1 cut(s)	983
Eco47I	GGWCC	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	2 cut(s)	89, 647
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	2 cut(s)	94, 789
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	816
EgeI	GGCGCC	1 cut(s)	916
EheI	GGCGCC	1 cut(s)	916
ErhI	CCWWGG	2 cut(s)	94, 789
Esp3I	CGTCTC	1 cut(s)	672
FaeI	CATG	5 cut(s)	145, 606, 700, 887, 1013
FalI	AAGNNNNNCTT	2 cut(s)	288, 320
FaqI	GGGAC	2 cut(s)	152, 463
FatI	CATG	5 cut(s)	141, 602, 696, 883, 1009
Fnu4HI	GCNGC	1 cut(s)	903
FokI	GGATG	5 cut(s)	205, 218, 365, 694, 783
FriOI	GRGCYC	1 cut(s)	816
Fsp4HI	GCNGC	1 cut(s)	903
GlaI	GCGC	1 cut(s)	916
GluI	GCNGC	1 cut(s)	903
HaeII	RGCGCY	1 cut(s)	918
HaeIII	GGCC	1 cut(s)	999
HapII	CCGG	2 cut(s)	741, 896
HgaI	GACGC	1 cut(s)	777
HhaI	GCGC	1 cut(s)	917
Hin1I	GRCGYC	1 cut(s)	915
Hin1II	CATG	5 cut(s)	145, 606, 700, 887, 1013
Hin6I	GCGC	1 cut(s)	915
HinP1I	GCGC	1 cut(s)	915
HindIII	AAGCTT	1 cut(s)	348
HinfI	GANTC	3 cut(s)	263, 851, 938
HpaII	CCGG	2 cut(s)	741, 896
HphI	GGTGA	1 cut(s)	973
Hpy166II	GTNNAC	2 cut(s)	91, 182
Hpy188I	TCNGA	3 cut(s)	760, 943, 959
Hpy188III	TCNNGA	5 cut(s)	17, 137, 551, 809, 844
Hpy8I	GTNNAC	2 cut(s)	91, 182
HpyAV	CCTTC	5 cut(s)	426, 454, 604, 889, 905
HpyCH4III	ACNGT	1 cut(s)	520
HpyCH4IV	ACGT	1 cut(s)	452
HpyCH4V	TGCA	5 cut(s)	422, 631, 707, 860, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 923
HpyF3I	CTNAG	4 cut(s)	267, 490, 992, 1001
HpySE526I	ACGT	1 cut(s)	452
Hsp92I	GRCGYC	1 cut(s)	915
Hsp92II	CATG	5 cut(s)	145, 606, 700, 887, 1013
HspAI	GCGC	1 cut(s)	915
KasI	GGCGCC	1 cut(s)	914
Kzo9I	GATC	3 cut(s)	400, 737, 875
Lsp1109I	GCAGC	1 cut(s)	889
LweI	GCATC	1 cut(s)	716
MaeII	ACGT	1 cut(s)	452
MaeIII	GTNAC	2 cut(s)	287, 987
MalI	GATC	3 cut(s)	402, 739, 877
MboI	GATC	3 cut(s)	400, 737, 875
MboII	GAAGA	7 cut(s)	62, 82, 296, 439, 568, 653, 658
MfeI	CAATTG	1 cut(s)	778
MflI	RGATCY	2 cut(s)	737, 875
MhlI	GDGCHC	1 cut(s)	816
MluCI	AATT	6 cut(s)	358, 683, 778, 820, 889, 944
Mly113I	GGCGCC	1 cut(s)	915
MlyI	GAGTC	1 cut(s)	860
MmeI	TCCRAC	2 cut(s)	130, 587
MnlI	CCTC	7 cut(s)	13, 183, 292, 633, 722, 727, 840
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	2 cut(s)	741, 896
MspR9I	CCNGG	3 cut(s)	656, 742, 896
MunI	CAATTG	1 cut(s)	778
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	628, 923
NarI	GGCGCC	1 cut(s)	915
NciI	CCSGG	2 cut(s)	742, 896
NdeII	GATC	3 cut(s)	400, 737, 875
NlaIII	CATG	5 cut(s)	145, 606, 700, 887, 1013
NlaIV	GGNNCC	4 cut(s)	739, 877, 916, 1015
NmeAIII	GCCGAG	2 cut(s)	730, 943
NmuCI	GTSAC	1 cut(s)	987
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	1 cut(s)	606
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	2 cut(s)	263, 938
PfoI	TCCNGGA	1 cut(s)	894
PkrI	GCNGC	1 cut(s)	904
PleI	GAGTC	1 cut(s)	859
PluTI	GGCGCC	1 cut(s)	918
PpsI	GAGTC	1 cut(s)	859
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	4 cut(s)	739, 877, 916, 1015
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	737, 875
RsaI	GTAC	2 cut(s)	90, 248
RsaNI	GTAC	2 cut(s)	89, 247
RseI	CAYNNNNRTG	1 cut(s)	383
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
SatI	GCNGC	1 cut(s)	903
Sau3AI	GATC	3 cut(s)	400, 737, 875
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	860
ScrFI	CCNGG	3 cut(s)	656, 742, 896
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	1 cut(s)	716
SfoI	GGCGCC	1 cut(s)	916
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	6 cut(s)	358, 683, 778, 820, 889, 944
SspDI	GGCGCC	1 cut(s)	914
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	3 cut(s)	654, 740, 894
StyI	CCWWGG	2 cut(s)	94, 789
TaaI	ACNGT	1 cut(s)	520
TaiI	ACGT	1 cut(s)	455
TaqI	TCGA	2 cut(s)	37, 207
TasI	AATT	6 cut(s)	358, 683, 778, 820, 889, 944
TatI	WGTACW	2 cut(s)	88, 246
TfiI	GAWTC	2 cut(s)	263, 938
Tru1I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
Tru9I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
TscAI	CASTG	2 cut(s)	72, 261
TseFI	GTSAC	1 cut(s)	987
TseI	GCWGC	1 cut(s)	902
Tsp45I	GTSAC	1 cut(s)	987
TspDTI	ATGAA	3 cut(s)	158, 401, 998
TspGWI	ACGGA	2 cut(s)	575, 780
TspRI	CASTG	2 cut(s)	72, 261
VpaK11BI	GGWCC	1 cut(s)	793
VspI	ATTAAT	1 cut(s)	116
XapI	RAATTY	1 cut(s)	944
XceI	RCATGY	1 cut(s)	606
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.