Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Reverse (-)

1830557 .. 1833993

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02430.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGGTATTGCCAATCAAGAGGCGGTCAAGCAGTTTCAGAAGTTAATGGAAGAAGTTGACGAGCCACTGAAGAATACATTTGAGAATGTGCACCAGGGGTATCCAAATGAGACATTAATGCGTTTTCTTAAAGCTCGGGACATGAATGTGGGAAAAGCCCATAAAATGTTGCTCGACTGTTTACAATGGAGGATAGAAAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCAAATGATTTGTACAGAGCAGTGCGAGATTCGCAGCTTGTGGGATTGTCAGGTTACTCAAAAAAGGGTCTTCCTGTCATTGCTGTTGGTGTGGGGCAAAGCACATTTGACAAAGCTTCTGTAAATTACTATGTCCAGTCTCACATCCAAATGAATGAGTACAGAGATCGTGTTGTATTGCCTTCCGCAACAAAGAAGTATGGACAGTATATTGGAACGTGTGTGAAGGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAACCAGATAAAGCTTTTGACTGTTGTCTCTACAATTGATGACTTAAACTATCCAGAGAAGACGGATACATACTATATCGTCAATGTCCCATACATATTTTCCGCCTGTTGGAAGGTGGTAAAGCCTCTTTTACAAGAAAGAACAAGGAGGAAAATCCAGGTTCTTCAAGGTTCTGGGAAAGACGAATTACTGAAAATCATGGACTACGCATCTCTCCCACATTTTTGTAGAAAGGAGGGATCTGGGTCCTCTAGGCATTCTGACAACGGACACACTAACAATTGTTTCTCCTTTGACCATCCATTCCATCAAGAGCTCTACAATTTCGTCAAGCAACAAGCGAGCTTGAGGGAGTCCATTGCACCACTCAAGCAGGGATCCTTCCATGTTAATTTTCCAGAGACGGACCCAGAACGTGCAGACATTGCAAAGACCATAGAATCCGAGTTCCAGAAGTTCGGAAATCAGAATCAAAACGGGCTCGCCAAGTCACTAAGTGGCCTAAGAGTCAATGGTGCTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

341

Amino Acids

38.54

Weight (kDa)

8.76

Isoelectric Point (pI)

34.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	23, 420, 600
AclWI	GGATC	3 cut(s)	745, 870, 883
AcuI	CTGAAG	1 cut(s)	89
AdeI	CACNNNGTG	1 cut(s)	995
AfaI	GTAC	2 cut(s)	248, 395
AfiI	CCNNNNNNNGG	1 cut(s)	606
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	1 cut(s)	665
AjnI	CCWGG	2 cut(s)	93, 654
AluBI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 843
AluI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 843
Alw21I	GWGCWC	2 cut(s)	93, 816
Alw26I	GTCTC	4 cut(s)	104, 378, 529, 893
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	3 cut(s)	745, 870, 883
Ama87I	CYCGRG	1 cut(s)	135
AoxI	GGCC	1 cut(s)	997
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	268
AseI	ATTAAT	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	744, 904
AvaI	CYCGRG	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	744, 904
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	1 cut(s)	875
BanII	GRGCYC	2 cut(s)	816, 981
BbsI	GAAGAC	2 cut(s)	296, 563
Bbv12I	GWGCWC	2 cut(s)	93, 816
BbvI	GCAGC	1 cut(s)	280
BccI	CCATC	2 cut(s)	804, 813
BciT130I	CCWGG	2 cut(s)	95, 656
BciVI	GTATCC	2 cut(s)	111, 556
BcoDI	GTCTC	4 cut(s)	104, 378, 529, 893
BfaI	CTAG	1 cut(s)	750
BfuI	GTATCC	2 cut(s)	111, 556
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme1390I	CCNGG	2 cut(s)	95, 656
Bme18I	GGWCC	2 cut(s)	744, 904
BmeT110I	CYCGRG	1 cut(s)	135
BmgT120I	GGNCC	2 cut(s)	744, 904
BmiI	GGNNCC	3 cut(s)	745, 877, 906
BmrFI	CCNGG	2 cut(s)	95, 656
BmsI	GCATC	1 cut(s)	716
BoxI	GACNNNNGTC	1 cut(s)	521
BpiI	GAAGAC	2 cut(s)	296, 563
BpuEI	CTTGAG	2 cut(s)	851, 865
BsaJI	CCNNGG	1 cut(s)	94
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse1I	ACTGG	2 cut(s)	370, 481
Bse3DI	GCAATG	3 cut(s)	312, 855, 921
BseBI	CCWGG	2 cut(s)	95, 656
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	231, 378, 796
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMI	GCAATG	3 cut(s)	312, 855, 921
BseMII	CTCAG	1 cut(s)	504
BseNI	ACTGG	2 cut(s)	370, 481
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	280
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	1 cut(s)	999
BsiHKAI	GWGCWC	2 cut(s)	93, 816
BsiHKCI	CYCGRG	1 cut(s)	135
BslFI	GGGAC	2 cut(s)	152, 569
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	4 cut(s)	104, 378, 529, 893
BsmBI	CGTCTC	1 cut(s)	893
BsmFI	GGGAC	2 cut(s)	152, 569
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	999
BsoBI	CYCGRG	1 cut(s)	135
Bsp1286I	GDGCHC	3 cut(s)	93, 816, 981
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	400, 737, 875
BspACI	CCGC	3 cut(s)	23, 420, 600
BspANI	GGCC	1 cut(s)	999
BspCNI	CTCAG	1 cut(s)	503
BspLI	GGNNCC	3 cut(s)	745, 877, 906
BspPI	GGATC	3 cut(s)	745, 870, 883
BsrDI	GCAATG	3 cut(s)	312, 855, 921
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	2 cut(s)	370, 481
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	3 cut(s)	400, 737, 875
Bst2UI	CCWGG	2 cut(s)	95, 656
Bst4CI	ACNGT	3 cut(s)	179, 441, 520
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	841, 981
BstDEI	CTNAG	3 cut(s)	490, 992, 1001
BstF5I	GGATG	3 cut(s)	231, 378, 796
BstKTI	GATC	3 cut(s)	403, 740, 878
BstMAI	GTCTC	4 cut(s)	104, 378, 529, 893
BstMBI	GATC	3 cut(s)	400, 737, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 923
BstNI	CCWGG	2 cut(s)	95, 656
BstPAI	GACNNNNGTC	1 cut(s)	521
BstSCI	CCNGG	2 cut(s)	93, 654
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	280
BstV2I	GAAGAC	2 cut(s)	296, 563
BstX2I	RGATCY	2 cut(s)	737, 875
BstYI	RGATCY	2 cut(s)	737, 875
BsuI	GTATCC	2 cut(s)	111, 556
BsuRI	GGCC	1 cut(s)	999
BtsCI	GGATG	3 cut(s)	231, 378, 796
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	65, 261
Cac8I	GCNNGC	2 cut(s)	841, 981
Cfr13I	GGNCC	2 cut(s)	744, 904
Csp6I	GTAC	2 cut(s)	247, 394
CviAII	CATG	3 cut(s)	142, 697, 884
CviQI	GTAC	2 cut(s)	247, 394
DdeI	CTNAG	3 cut(s)	490, 992, 1001
DpnI	GATC	3 cut(s)	402, 739, 877
DpnII	GATC	3 cut(s)	400, 737, 875
DraIII	CACNNNGTG	1 cut(s)	995
EciI	GGCGGA	1 cut(s)	589
Ecl136II	GAGCTC	1 cut(s)	814
Eco24I	GRGCYC	2 cut(s)	816, 981
Eco47I	GGWCC	2 cut(s)	744, 904
Eco53kI	GAGCTC	1 cut(s)	814
Eco57I	CTGAAG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	135
EcoICRI	GAGCTC	1 cut(s)	814
EcoO109I	RGGNCCY	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	93, 654
EcoT38I	GRGCYC	2 cut(s)	816, 981
Esp3I	CGTCTC	1 cut(s)	893
FaeI	CATG	3 cut(s)	145, 700, 887
FaqI	GGGAC	2 cut(s)	152, 569
FatI	CATG	3 cut(s)	141, 696, 883
Fnu4HI	GCNGC	1 cut(s)	269
FokI	GGATG	3 cut(s)	218, 365, 783
FriOI	GRGCYC	2 cut(s)	816, 981
Fsp4HI	GCNGC	1 cut(s)	269
FspBI	CTAG	1 cut(s)	750
GluI	GCNGC	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	999
Hin1II	CATG	3 cut(s)	145, 700, 887
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HindIII	AAGCTT	2 cut(s)	348, 509
HinfI	GANTC	5 cut(s)	263, 851, 938, 967, 1005
Hpy166II	GTNNAC	3 cut(s)	58, 91, 182
Hpy188I	TCNGA	5 cut(s)	39, 760, 943, 959, 966
Hpy188III	TCNNGA	6 cut(s)	17, 137, 551, 809, 896, 949
Hpy8I	GTNNAC	3 cut(s)	58, 91, 182
HpyAV	CCTTC	4 cut(s)	426, 454, 604, 889
HpyCH4III	ACNGT	3 cut(s)	179, 441, 520
HpyCH4IV	ACGT	2 cut(s)	452, 913
HpyCH4V	TGCA	4 cut(s)	91, 860, 917, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 923
HpyF3I	CTNAG	3 cut(s)	490, 992, 1001
HpySE526I	ACGT	2 cut(s)	452, 913
Hsp92II	CATG	3 cut(s)	145, 700, 887
Kzo9I	GATC	3 cut(s)	400, 737, 875
Lsp1109I	GCAGC	1 cut(s)	280
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	750
MaeII	ACGT	2 cut(s)	452, 913
MaeIII	GTNAC	2 cut(s)	287, 987
MalI	GATC	3 cut(s)	402, 739, 877
MboI	GATC	3 cut(s)	400, 737, 875
MboII	GAAGA	5 cut(s)	62, 82, 296, 568, 653
MfeI	CAATTG	2 cut(s)	531, 778
MflI	RGATCY	2 cut(s)	737, 875
MhlI	GDGCHC	3 cut(s)	93, 816, 981
MluCI	AATT	7 cut(s)	204, 358, 531, 683, 778, 820, 889
MlyI	GAGTC	2 cut(s)	860, 1014
MmeI	TCCRAC	1 cut(s)	587
MnlI	CCTC	7 cut(s)	13, 183, 633, 639, 727, 757, 840
MseI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
MslI	CAYNNNNRTG	2 cut(s)	146, 383
MspR9I	CCNGG	2 cut(s)	95, 656
MunI	CAATTG	2 cut(s)	531, 778
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	2 cut(s)	95, 656
MwoI	GCNNNNNNNGC	2 cut(s)	265, 923
NdeII	GATC	3 cut(s)	400, 737, 875
NlaIII	CATG	3 cut(s)	145, 700, 887
NlaIV	GGNNCC	3 cut(s)	745, 877, 906
NmuCI	GTSAC	1 cut(s)	987
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	3 cut(s)	263, 938, 967
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	2 cut(s)	859, 1013
PpsI	GAGTC	2 cut(s)	859, 1013
PpuMI	RGGWCCY	1 cut(s)	744
PshAI	GACNNNNGTC	1 cut(s)	521
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	744
Psp6I	CCWGG	2 cut(s)	93, 654
PspGI	CCWGG	2 cut(s)	93, 654
PspN4I	GGNNCC	3 cut(s)	745, 877, 906
PspPI	GGNCC	2 cut(s)	744, 904
PspPPI	RGGWCCY	1 cut(s)	744
PsuI	RGATCY	2 cut(s)	737, 875
RsaI	GTAC	2 cut(s)	248, 395
RsaNI	GTAC	2 cut(s)	247, 394
RseI	CAYNNNNRTG	2 cut(s)	146, 383
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	400, 737, 875
Sau96I	GGNCC	2 cut(s)	744, 904
SchI	GAGTC	2 cut(s)	860, 1014
ScrFI	CCNGG	2 cut(s)	95, 656
SduI	GDGCHC	3 cut(s)	93, 816, 981
SfaNI	GCATC	1 cut(s)	716
SinI	GGWCC	2 cut(s)	744, 904
SmiMI	CAYNNNNRTG	2 cut(s)	146, 383
SmlI	CTYRAG	2 cut(s)	844, 866
SmoI	CTYRAG	2 cut(s)	844, 866
Sse9I	AATT	7 cut(s)	204, 358, 531, 683, 778, 820, 889
SsiI	CCGC	3 cut(s)	23, 420, 600
SspMI	CTAG	1 cut(s)	750
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	2 cut(s)	93, 654
TaaI	ACNGT	3 cut(s)	179, 441, 520
TaiI	ACGT	2 cut(s)	455, 916
TaqI	TCGA	1 cut(s)	174
TasI	AATT	7 cut(s)	204, 358, 531, 683, 778, 820, 889
TatI	WGTACW	2 cut(s)	246, 393
TfiI	GAWTC	3 cut(s)	263, 938, 967
Tru1I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
Tru9I	TTAA	7 cut(s)	44, 116, 129, 482, 498, 542, 888
TscAI	CASTG	2 cut(s)	72, 261
TseFI	GTSAC	1 cut(s)	987
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	987
TspDTI	ATGAA	3 cut(s)	158, 401, 1008
TspGWI	ACGGA	3 cut(s)	575, 780, 917
TspRI	CASTG	2 cut(s)	72, 261
VneI	GTGCAC	1 cut(s)	89
VpaK11BI	GGWCC	2 cut(s)	744, 904
VspI	ATTAAT	1 cut(s)	116
XspI	CTAG	1 cut(s)	750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.