Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Forward (+)

80929928 .. 80934114

Gene Structure 4187 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTTTAAATATCTGCAAAGGGAACCGACAGAAGACAAGATGGGTGTTCCTGATCCAGAAGCGATCAAGCAGTTTCAGTTGTTAATGGAAGAAGTTGATGAACCGCTGAAGAAGACATTTGAGAATGTGCACCAAGGGTATCCAAATGAGACATTTGTGCGGTTTCTTAAAGCGAGGGACTGGAATGTTGGCAAAGCCCACAAAATGTTGGTTGACTGTTTGCAATGGAGGATAGACAGCGAAATTGACAATATATTGGCGAAACCAATCATCCCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTTTGGGATTGTCTGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTATTGGTGTTGGGCTCAGCACATATGACAAAGCTTCTGTAAATTACTATGTTCAGTCGCACATCCAAATGAATGAATACCGAGATCGTGTAGTTTTACCTGCTGCAACAAATAAGTATGGCAAATATATTGGAACCTGTGTGAAAGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAATCATATTAAGCTTTTGACTGTTATTTCCACTATCGATGACTTGAATTATCCAGAAAAGACGGATACATACTATATTGTCAATGCCCCATACATATTTTCAGCATGTTGGAAGGTGGTAAAACCTCTTTTGCAAGAAAGGACTAGGAGGAAAATCCAGGTTCTTCAAGGTTGTGGGAAAGATGAATTACTCAAAATCATGGATTATTCGTCCCTCCCACATTTTTGTAGAAAACAGGGCTCTGGATCATCTCGGAATTCAGAGAATGGACATACTAGTAATTGTTTCTCGTTGGACCATGCTTTCCATCAAGAGCTCTACAATTTTGTCAAGCAGCAAGCTATTCAAACGGATCATGTTGCACCAATCAAACAGGGATCCTTCCACGTCAATTTCCCTGATCCAAACCCTGAAGACGCAGAGATTGCGAAAACCATAGAGTCTGAGTTCCACAAGTATGGAAACCACAACGGCCTCAACGGCCTCACCAAGTCACTAAGTGGCCTAAGATTTAACGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

353

Amino Acids

40.2

Weight (kDa)

7.65

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	21 - 72	1.8e-12	CRAL/TRIO, N-terminal domain
CRAL_TRIO	PF00650	102 - 254	9.4e-19	CRAL/TRIO domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	463
AciI	CCGC	2 cut(s)	104, 160
AclWI	GGATC	6 cut(s)	47, 790, 897, 909, 922, 932
AcsI	RAATTY	1 cut(s)	793
AcuI	CTGAAG	2 cut(s)	128, 969
AdeI	CACNNNGTG	1 cut(s)	1037
AfaI	GTAC	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	583, 704, 884
AhlI	ACTAGT	1 cut(s)	812
AjiI	CACGTC	1 cut(s)	925
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	5 cut(s)	310, 389, 550, 853, 878
AluI	AGCT	5 cut(s)	310, 389, 550, 853, 878
Alw21I	GWGCWC	2 cut(s)	132, 855
Alw26I	GTCTC	1 cut(s)	143
Alw44I	GTGCAC	1 cut(s)	128
AlwI	GGATC	6 cut(s)	47, 790, 897, 909, 922, 932
AoxI	GGCC	3 cut(s)	1009, 1018, 1039
ApaLI	GTGCAC	1 cut(s)	128
ApeKI	GCWGC	2 cut(s)	458, 871
ApoI	RAATTY	1 cut(s)	793
AspS9I	GGNCC	1 cut(s)	832
AsuHPI	GGTGA	1 cut(s)	1015
AvaII	GGWCC	1 cut(s)	832
BaeGI	GKGCMC	1 cut(s)	132
BamHI	GGATCC	1 cut(s)	914
BanII	GRGCYC	3 cut(s)	372, 779, 855
BbsI	GAAGAC	4 cut(s)	39, 119, 335, 957
Bbv12I	GWGCWC	2 cut(s)	132, 855
BbvI	GCAGC	2 cut(s)	445, 883
BccI	CCATC	2 cut(s)	34, 852
BceAI	ACGGC	2 cut(s)	1024, 1033
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	2 cut(s)	150, 595
BcoDI	GTCTC	1 cut(s)	143
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	2 cut(s)	681, 813
BfuAI	ACCTGC	1 cut(s)	463
BfuI	GTATCC	2 cut(s)	150, 595
BglI	GCCNNNNNGGC	1 cut(s)	1017
BisI	GCNGC	2 cut(s)	459, 872
BlpI	GCTNAGC	1 cut(s)	371
BlsI	GCNGC	2 cut(s)	460, 873
Bme1390I	CCNGG	1 cut(s)	695
Bme18I	GGWCC	1 cut(s)	832
BmgBI	CACGTC	1 cut(s)	925
BmgT120I	GGNCC	1 cut(s)	832
BmiI	GGNNCC	3 cut(s)	24, 490, 916
BmrFI	CCNGG	1 cut(s)	695
BpiI	GAAGAC	4 cut(s)	39, 119, 335, 957
Bpu1102I	GCTNAGC	1 cut(s)	371
Bsa29I	ATCGAT	1 cut(s)	573
BsaJI	CCNNGG	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	185, 520
Bse3DI	GCAATG	2 cut(s)	230, 351
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	573
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	2 cut(s)	270, 417
BseMI	GCAATG	2 cut(s)	230, 351
BseMII	CTCAG	4 cut(s)	320, 385, 543, 972
BseNI	ACTGG	2 cut(s)	185, 520
BseSI	GKGCMC	1 cut(s)	132
BseXI	GCAGC	2 cut(s)	445, 883
BshFI	GGCC	3 cut(s)	1011, 1020, 1041
BshVI	ATCGAT	1 cut(s)	573
BsiHKAI	GWGCWC	2 cut(s)	132, 855
BslFI	GGGAC	2 cut(s)	191, 733
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	191, 733
BsnI	GGCC	3 cut(s)	1011, 1020, 1041
Bsp1286I	GDGCHC	4 cut(s)	132, 372, 779, 855
Bsp1407I	TGTACA	1 cut(s)	285
Bsp143I	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
Bsp1720I	GCTNAGC	1 cut(s)	371
BspACI	CCGC	2 cut(s)	104, 160
BspANI	GGCC	3 cut(s)	1011, 1020, 1041
BspCNI	CTCAG	4 cut(s)	319, 384, 542, 973
BspDI	ATCGAT	1 cut(s)	573
BspLI	GGNNCC	3 cut(s)	24, 490, 916
BspMI	ACCTGC	1 cut(s)	463
BspPI	GGATC	6 cut(s)	47, 790, 897, 909, 922, 932
BsrDI	GCAATG	2 cut(s)	230, 351
BsrGI	TGTACA	1 cut(s)	285
BsrI	ACTGG	2 cut(s)	185, 520
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
BssT1I	CCWWGG	1 cut(s)	133
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	2 cut(s)	218, 559
BstAPI	GCANNNNNTGC	1 cut(s)	962
BstAUI	TGTACA	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	6 cut(s)	306, 371, 529, 981, 1034, 1043
BstF5I	GGATG	2 cut(s)	270, 417
BstKTI	GATC	7 cut(s)	55, 66, 442, 785, 892, 917, 940
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	962, 1017
BstNI	CCWGG	1 cut(s)	695
BstNSI	RCATGY	1 cut(s)	645
BstSCI	CCNGG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	445, 883
BstV2I	GAAGAC	4 cut(s)	39, 119, 335, 957
BstX2I	RGATCY	1 cut(s)	914
BstXI	CCANNNNNNTGG	1 cut(s)	995
BstYI	RGATCY	1 cut(s)	914
Bsu15I	ATCGAT	1 cut(s)	573
BsuI	GTATCC	2 cut(s)	150, 595
BsuRI	GGCC	3 cut(s)	1011, 1020, 1041
BsuTUI	ATCGAT	1 cut(s)	573
BtrI	CACGTC	1 cut(s)	925
BtsCI	GGATG	2 cut(s)	270, 417
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	463
Cac8I	GCNNGC	1 cut(s)	876
Cfr13I	GGNCC	1 cut(s)	832
ClaI	ATCGAT	1 cut(s)	573
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	642, 736, 836, 893
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	6 cut(s)	306, 371, 529, 981, 1034, 1043
DpnI	GATC	7 cut(s)	54, 65, 441, 784, 891, 916, 939
DpnII	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
DraI	TTTAAA	1 cut(s)	7
DraIII	CACNNNGTG	1 cut(s)	1037
Ecl136II	GAGCTC	1 cut(s)	853
Eco130I	CCWWGG	1 cut(s)	133
Eco24I	GRGCYC	3 cut(s)	372, 779, 855
Eco47I	GGWCC	1 cut(s)	832
Eco53kI	GAGCTC	1 cut(s)	853
Eco57I	CTGAAG	2 cut(s)	128, 969
EcoICRI	GAGCTC	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	793
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	133
EcoT38I	GRGCYC	3 cut(s)	372, 779, 855
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	4 cut(s)	645, 739, 839, 896
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FaqI	GGGAC	2 cut(s)	191, 733
FatI	CATG	4 cut(s)	641, 735, 835, 892
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	2 cut(s)	459, 872
FokI	GGATG	2 cut(s)	257, 404
FriOI	GRGCYC	3 cut(s)	372, 779, 855
Fsp4HI	GCNGC	2 cut(s)	459, 872
FspBI	CTAG	2 cut(s)	681, 813
GluI	GCNGC	2 cut(s)	459, 872
HaeIII	GGCC	3 cut(s)	1011, 1020, 1041
HgaI	GACGC	1 cut(s)	962
Hin1II	CATG	4 cut(s)	645, 739, 839, 896
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	2 cut(s)	387, 548
HinfI	GANTC	2 cut(s)	302, 977
HphI	GGTGA	1 cut(s)	1015
Hpy166II	GTNNAC	2 cut(s)	130, 214
Hpy188I	TCNGA	3 cut(s)	792, 799, 982
Hpy188III	TCNNGA	6 cut(s)	50, 56, 590, 780, 848, 1059
Hpy8I	GTNNAC	2 cut(s)	130, 214
HpyAV	CCTTC	2 cut(s)	643, 928
HpyCH4III	ACNGT	2 cut(s)	218, 559
HpyCH4IV	ACGT	1 cut(s)	924
HpyCH4V	TGCA	6 cut(s)	16, 130, 223, 461, 670, 899
HpyF10VI	GCNNNNNNNGC	2 cut(s)	962, 1017
HpyF3I	CTNAG	6 cut(s)	306, 371, 529, 981, 1034, 1043
HpySE526I	ACGT	1 cut(s)	924
Hsp92II	CATG	4 cut(s)	645, 739, 839, 896
Kzo9I	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
Lsp1109I	GCAGC	2 cut(s)	445, 883
MaeI	CTAG	2 cut(s)	681, 813
MaeII	ACGT	1 cut(s)	924
MaeIII	GTNAC	2 cut(s)	326, 1029
MalI	GATC	7 cut(s)	54, 65, 441, 784, 891, 916, 939
MboI	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
MboII	GAAGA	7 cut(s)	44, 101, 121, 124, 335, 692, 962
MflI	RGATCY	1 cut(s)	914
MhlI	GDGCHC	4 cut(s)	132, 372, 779, 855
MluCI	AATT	8 cut(s)	243, 397, 583, 722, 793, 817, 859, 928
MlyI	GAGTC	1 cut(s)	986
MmeI	TCCRAC	2 cut(s)	626, 810
MnlI	CCTC	8 cut(s)	168, 222, 331, 672, 678, 761, 1022, 1031
MseI	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1050
MslI	CAYNNNNRTG	2 cut(s)	422, 993
MspA1I	CMGCKG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	2 cut(s)	962, 1017
NdeI	CATATG	1 cut(s)	379
NdeII	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
NlaIII	CATG	4 cut(s)	645, 739, 839, 896
NlaIV	GGNNCC	3 cut(s)	24, 490, 916
NmuCI	GTSAC	1 cut(s)	1029
NspI	RCATGY	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	2 cut(s)	460, 873
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
Psp124BI	GAGCTC	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	3 cut(s)	24, 490, 916
PspPI	GGNCC	1 cut(s)	832
PsuI	RGATCY	1 cut(s)	914
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	2 cut(s)	422, 993
SacI	GAGCTC	1 cut(s)	855
SaqAI	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1050
SatI	GCNGC	2 cut(s)	459, 872
Sau3AI	GATC	7 cut(s)	52, 63, 439, 782, 889, 914, 937
Sau96I	GGNCC	1 cut(s)	832
SchI	GAGTC	1 cut(s)	986
ScrFI	CCNGG	1 cut(s)	695
SduI	GDGCHC	4 cut(s)	132, 372, 779, 855
SfiI	GGCCNNNNNGGCC	1 cut(s)	1017
SinI	GGWCC	1 cut(s)	832
SmiMI	CAYNNNNRTG	2 cut(s)	422, 993
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	8 cut(s)	243, 397, 583, 722, 793, 817, 859, 928
SsiI	CCGC	2 cut(s)	104, 160
SspMI	CTAG	2 cut(s)	681, 813
SstI	GAGCTC	1 cut(s)	855
StyD4I	CCNGG	1 cut(s)	693
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	2 cut(s)	218, 559
TaiI	ACGT	1 cut(s)	927
TaqI	TCGA	1 cut(s)	573
TasI	AATT	8 cut(s)	243, 397, 583, 722, 793, 817, 859, 928
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1050
Tru9I	TTAA	7 cut(s)	6, 83, 168, 521, 537, 546, 1050
TscAI	CASTG	1 cut(s)	300
TseFI	GTSAC	1 cut(s)	1029
TseI	GCWGC	2 cut(s)	458, 871
Tsp45I	GTSAC	1 cut(s)	1029
TspDTI	ATGAA	4 cut(s)	114, 440, 444, 735
TspGWI	ACGGA	2 cut(s)	614, 902
TspRI	CASTG	1 cut(s)	300
VneI	GTGCAC	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	832
XapI	RAATTY	1 cut(s)	793
XceI	RCATGY	1 cut(s)	645
XspI	CTAG	2 cut(s)	681, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.