Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019498.1

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Reverse (-)

1682 .. 4778

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019498.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atgaatgaataccgagatcgtgtagttttacctgctgcaacaaataagtatggcaaatatattggaacctgtgtgaaagttttggatatgactggtttaaggctctcagcacttaatcatattaagcttttgactgttatttccactatcgatgacttgaattatccagaaaagacggatacatactatattgtcaatgccccatacatattttcagcatgttggaaggtggtaaaacctcttttgcaagaaaggactaggaggaaaatccaggttcttcaaggttgtgggaaagatgaattactcaaaatcatggattattcgtccctcccacatttttgtagaaaacagggctctggatcatctcggaattcagagaatggacatactagtaattgtttctcgttggaccatgctttccatcaagagctctacaattttgtcaagcagcaagctattcaaacggatcatgttgcaccaatcaaacagggatccttccacgtcaatttccctgatccaaaccctgaagacgcagagattgcgaaaaccatagagtctgagttccacaagtgcttaaaccgctgcgtcaagtggaaaaagccgccaccaactgttgcgcgtctggaagcttctcgcagaattcgaggacctccacctcctaatggacacggaggattttctccggctcaagaaccagttgagatcgtcgatgctttggagatccgtctcgctcagcccagacgaacgatgacctgcagcgctgtcactagttcaccagagcctccgtcgtggagcaagtcggggtcctaccggttccgaatcccgcagggggagagagagggagagagagagctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

285

Amino Acids

32.27

Weight (kDa)

9.03

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	40, 761
AccII	CGCG	1 cut(s)	619
AciI	CCGC	3 cut(s)	580, 602, 824
AclWI	GGATC	6 cut(s)	367, 474, 486, 499, 509, 715
AcsI	RAATTY	2 cut(s)	370, 639
AcuI	CTGAAG	1 cut(s)	546
AfeI	AGCGCT	1 cut(s)	760
AfiI	CCNNNNNNNGG	2 cut(s)	662, 829
AgeI	ACCGGT	1 cut(s)	810
AgsI	TTSAA	3 cut(s)	160, 281, 461
AhlI	ACTAGT	2 cut(s)	389, 767
AjiI	CACGTC	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	5 cut(s)	127, 430, 455, 629, 853
AluI	AGCT	5 cut(s)	127, 430, 455, 629, 853
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	1 cut(s)	731
AlwI	GGATC	6 cut(s)	367, 474, 486, 499, 509, 715
Aor51HI	AGCGCT	1 cut(s)	760
ApeKI	GCWGC	4 cut(s)	35, 448, 582, 756
ApoI	RAATTY	2 cut(s)	370, 639
AsiGI	ACCGGT	1 cut(s)	810
AspLEI	GCGC	2 cut(s)	619, 761
AspS9I	GGNCC	3 cut(s)	409, 647, 804
AsuHPI	GGTGA	1 cut(s)	765
AvaII	GGWCC	3 cut(s)	409, 647, 804
BamHI	GGATCC	1 cut(s)	491
BanII	GRGCYC	2 cut(s)	356, 432
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	4 cut(s)	22, 460, 569, 768
BccI	CCATC	1 cut(s)	429
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	172
BcoDI	GTCTC	1 cut(s)	731
BcuI	ACTAGT	2 cut(s)	389, 767
BfaI	CTAG	3 cut(s)	258, 390, 768
BfmI	CTRYAG	1 cut(s)	754
BfoI	RGCGCY	1 cut(s)	762
BfuAI	ACCTGC	2 cut(s)	40, 761
BfuI	GTATCC	1 cut(s)	172
BisI	GCNGC	5 cut(s)	36, 449, 583, 602, 757
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	5 cut(s)	37, 450, 584, 603, 758
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	3 cut(s)	409, 647, 804
BmgBI	CACGTC	1 cut(s)	502
BmgT120I	GGNCC	3 cut(s)	409, 647, 804
BmiI	GGNNCC	4 cut(s)	67, 493, 805, 815
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	700
BpiI	GAAGAC	1 cut(s)	534
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	672
Bsa29I	ATCGAT	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	2 cut(s)	662, 829
Bse118I	RCCGGY	1 cut(s)	810
Bse1I	ACTGG	2 cut(s)	97, 695
BseBI	CCWGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	150
BseLI	CCNNNNNNNGG	2 cut(s)	662, 829
BseMII	CTCAG	3 cut(s)	120, 549, 746
BseNI	ACTGG	2 cut(s)	97, 695
BseXI	GCAGC	4 cut(s)	22, 460, 569, 768
Bsh1236I	CGCG	1 cut(s)	619
BshTI	ACCGGT	1 cut(s)	810
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	432
BsiSI	CCGG	2 cut(s)	683, 811
BslFI	GGGAC	1 cut(s)	310
BslI	CCNNNNNNNGG	2 cut(s)	662, 829
BsmAI	GTCTC	1 cut(s)	731
BsmBI	CGTCTC	1 cut(s)	731
BsmFI	GGGAC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	356, 432
Bsp143I	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	3 cut(s)	580, 602, 824
BspCNI	CTCAG	3 cut(s)	119, 550, 745
BspDI	ATCGAT	1 cut(s)	150
BspFNI	CGCG	1 cut(s)	619
BspLI	GGNNCC	4 cut(s)	67, 493, 805, 815
BspMAI	CTGCAG	1 cut(s)	758
BspMI	ACCTGC	2 cut(s)	40, 761
BspPI	GGATC	6 cut(s)	367, 474, 486, 499, 509, 715
BsrFI	RCCGGY	1 cut(s)	810
BsrI	ACTGG	2 cut(s)	97, 695
BssAI	RCCGGY	1 cut(s)	810
BssMI	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	136, 613
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	106, 558, 732
BstFNI	CGCG	1 cut(s)	619
BstH2I	RGCGCY	1 cut(s)	762
BstHHI	GCGC	2 cut(s)	619, 761
BstKTI	GATC	7 cut(s)	19, 362, 469, 494, 517, 705, 723
BstMAI	GTCTC	1 cut(s)	731
BstMBI	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 579
BstNI	CCWGG	1 cut(s)	272
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	754
BstUI	CGCG	1 cut(s)	619
BstV1I	GCAGC	4 cut(s)	22, 460, 569, 768
BstV2I	GAAGAC	1 cut(s)	534
BstX2I	RGATCY	2 cut(s)	491, 720
BstYI	RGATCY	2 cut(s)	491, 720
Bsu15I	ATCGAT	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	150
BtrI	CACGTC	1 cut(s)	502
BveI	ACCTGC	2 cut(s)	40, 761
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	2 cut(s)	619, 761
Cfr10I	RCCGGY	1 cut(s)	810
Cfr13I	GGNCC	3 cut(s)	409, 647, 804
ClaI	ATCGAT	1 cut(s)	150
CseI	GACGC	3 cut(s)	539, 574, 608
CspAI	ACCGGT	1 cut(s)	810
CviAII	CATG	4 cut(s)	219, 313, 413, 470
DdeI	CTNAG	3 cut(s)	106, 558, 732
DpnI	GATC	7 cut(s)	18, 361, 468, 493, 516, 704, 722
DpnII	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
Ecl136II	GAGCTC	1 cut(s)	430
Eco24I	GRGCYC	2 cut(s)	356, 432
Eco47I	GGWCC	3 cut(s)	409, 647, 804
Eco47III	AGCGCT	1 cut(s)	760
Eco53kI	GAGCTC	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	430
EcoO109I	RGGNCCY	2 cut(s)	647, 804
EcoRI	GAATTC	2 cut(s)	370, 639
EcoRII	CCWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	356, 432
Esp3I	CGTCTC	1 cut(s)	731
FaeI	CATG	4 cut(s)	222, 316, 416, 473
FaqI	GGGAC	1 cut(s)	310
FatI	CATG	4 cut(s)	218, 312, 412, 469
FauI	CCCGC	1 cut(s)	831
Fnu4HI	GCNGC	5 cut(s)	36, 449, 583, 602, 757
FriOI	GRGCYC	2 cut(s)	356, 432
Fsp4HI	GCNGC	5 cut(s)	36, 449, 583, 602, 757
FspBI	CTAG	3 cut(s)	258, 390, 768
GlaI	GCGC	2 cut(s)	618, 760
GluI	GCNGC	5 cut(s)	36, 449, 583, 602, 757
HaeII	RGCGCY	1 cut(s)	762
HapII	CCGG	2 cut(s)	683, 811
HgaI	GACGC	3 cut(s)	539, 574, 608
HhaI	GCGC	2 cut(s)	619, 761
Hin1II	CATG	4 cut(s)	222, 316, 416, 473
Hin6I	GCGC	2 cut(s)	617, 759
HinP1I	GCGC	2 cut(s)	617, 759
HindIII	AAGCTT	2 cut(s)	125, 627
HinfI	GANTC	2 cut(s)	554, 819
HpaII	CCGG	2 cut(s)	683, 811
HphI	GGTGA	1 cut(s)	765
Hpy166II	GTNNAC	1 cut(s)	773
Hpy188I	TCNGA	4 cut(s)	369, 376, 559, 818
Hpy188III	TCNNGA	5 cut(s)	167, 357, 425, 623, 689
Hpy8I	GTNNAC	1 cut(s)	773
Hpy99I	CGWCG	2 cut(s)	710, 790
HpyAV	CCTTC	2 cut(s)	220, 505
HpyCH4III	ACNGT	2 cut(s)	136, 613
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	38, 247, 476, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 579
HpyF3I	CTNAG	3 cut(s)	106, 558, 732
HpySE526I	ACGT	1 cut(s)	501
Hsp92II	CATG	4 cut(s)	222, 316, 416, 473
HspAI	GCGC	2 cut(s)	617, 759
Kzo9I	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
LmnI	GCTCC	1 cut(s)	792
Lsp1109I	GCAGC	4 cut(s)	22, 460, 569, 768
LweI	GCATC	1 cut(s)	700
MaeI	CTAG	3 cut(s)	258, 390, 768
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	763
MalI	GATC	7 cut(s)	18, 361, 468, 493, 516, 704, 722
MboI	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
MboII	GAAGA	2 cut(s)	269, 539
MflI	RGATCY	2 cut(s)	491, 720
MhlI	GDGCHC	2 cut(s)	356, 432
MluCI	AATT	7 cut(s)	160, 299, 370, 394, 436, 505, 639
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	203, 387
MnlI	CCTC	9 cut(s)	249, 255, 338, 638, 660, 665, 666, 792, 832
MseI	TTAA	4 cut(s)	98, 114, 123, 575
MspA1I	CMGCKG	1 cut(s)	582
MspI	CCGG	2 cut(s)	683, 811
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	619
MwoI	GCNNNNNNNGC	2 cut(s)	539, 579
NdeII	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
NlaIII	CATG	4 cut(s)	222, 316, 416, 473
NlaIV	GGNNCC	4 cut(s)	67, 493, 805, 815
NmuCI	GTSAC	1 cut(s)	763
NspI	RCATGY	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	640
PfeI	GAWTC	1 cut(s)	819
PinAI	ACCGGT	1 cut(s)	810
PkrI	GCNGC	5 cut(s)	37, 450, 584, 603, 758
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	2 cut(s)	647, 804
Psp124BI	GAGCTC	1 cut(s)	432
Psp5II	RGGWCCY	2 cut(s)	647, 804
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	4 cut(s)	67, 493, 805, 815
PspPI	GGNCC	3 cut(s)	409, 647, 804
PspPPI	RGGWCCY	2 cut(s)	647, 804
PstI	CTGCAG	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	491, 720
SacI	GAGCTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	98, 114, 123, 575
SatI	GCNGC	5 cut(s)	36, 449, 583, 602, 757
Sau3AI	GATC	7 cut(s)	16, 359, 466, 491, 514, 702, 720
Sau96I	GGNCC	3 cut(s)	409, 647, 804
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	2 cut(s)	356, 432
SfaNI	GCATC	1 cut(s)	700
SfcI	CTRYAG	1 cut(s)	754
SinI	GGWCC	3 cut(s)	409, 647, 804
SmlI	CTYRAG	1 cut(s)	687
SmoI	CTYRAG	1 cut(s)	687
SpeI	ACTAGT	2 cut(s)	389, 767
Sse9I	AATT	7 cut(s)	160, 299, 370, 394, 436, 505, 639
SsiI	CCGC	3 cut(s)	580, 602, 824
SspMI	CTAG	3 cut(s)	258, 390, 768
SstI	GAGCTC	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	136, 613
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	3 cut(s)	150, 643, 708
TasI	AATT	7 cut(s)	160, 299, 370, 394, 436, 505, 639
TauI	GCSGC	1 cut(s)	604
TfiI	GAWTC	1 cut(s)	819
Tru1I	TTAA	4 cut(s)	98, 114, 123, 575
Tru9I	TTAA	4 cut(s)	98, 114, 123, 575
TseFI	GTSAC	1 cut(s)	763
TseI	GCWGC	4 cut(s)	35, 448, 582, 756
Tsp45I	GTSAC	1 cut(s)	763
TspDTI	ATGAA	3 cut(s)	17, 21, 312
TspGWI	ACGGA	5 cut(s)	191, 479, 684, 713, 774
VpaK11BI	GGWCC	3 cut(s)	409, 647, 804
XapI	RAATTY	2 cut(s)	370, 639
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	3 cut(s)	258, 390, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.