Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009845

Physical Location & Seq

Genomic Coordinates Reverse (-)

2029993 .. 2034716

Gene Structure 4724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G025500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTATTGCCAATAAGGAGGCGATCAAGCAGTTTCAGTTGTTAATGGAAGAAGTTGATGAGCCATTGAAGAATACATTTGAGAATGTGCACCAGGGATATCCAGATGAGACATTTGTGCGTTTTCTTAAAGCTAGGGACGGGAATGTTGGAAAAGCCCATAAAATGCTGATTGACTGTTTACAATGGAGGATCCAAAGTGAAATTGACAATATATTGGCGAAACCAATTATCCCTACTGATTTGTACAGAGCAGTGCGAGATTCTCAGCTTGTGGGGTTGTCAGGTTACTCAAAAGAGGGTCTTCCTGTCATTGCTGTTGGTCTGGGGCTCAGCACATTTGACAAAGCTTCTGTAAATTACTATGTCCAATCACACATCCAAATGAATGAATACAGAGATCGTGTTGTTTTACCTTCCGCAACAAAGAAGTATGGACAATATATTGGAACATGTGTGAAGGTTTTGGATATGACTGGTTTAAGGCTCTCAGCACTTAACCAGATAAAGCTTTTGACTGTTATCTCTACAATAGATGACTTAAACTATCCAGAGAAGACAGATACATACTATGTTGTCAATGTCCCGTACATATTTTCAGCATGTTGGAAGGTGGTCAAGCCTCTTTTGCAAGAAAGGACGAGGAGGAAAATCCAAGTTCTTCAAGGCTGTGGGAGAGATGAGTTACTGAAAATCATGGATTATGCATCCCTCCCACATTTTTGTAGAAAAGAGGGCTCTGGGTCATCTCGGCATTCGGAGAATGGACATACTAACAATTGTTTCTCCTTCGACCATCCTTTCCATCAAGAGCTCTACAATTTTGTCAAGCAACAAGCTGTCCTTAGAGAGTCTGTTGCACCACTCAAGCAGGGATCCTTCCATGTTAATTTCCCCGAGACAGACCACGAAGGTGCAGAGATTGCAAAGACCATAGAAACTGAGTTCCACAAGTTTGGAAATCAAAATGGGCTCACCAAGTCACTAAATGGCCTAAGAGTCAACGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

338

Amino Acids

38.23

Weight (kDa)

8.11

Isoelectric Point (pI)

36.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55840 AT1G55840
fragaria_vesca	FvH4_3g42730 FvH4_3g42730 FvH4_3g42730 FvH4_3g42730
malus_domestica	MD03G1029400.v1.1 MD11G1032700.v1.1
prunus_persica	Prupe.6G025500_v2.0.a1
pyrus_communis	pycom03g02430 pycom11g02840
rosa_chinensis	RchiOBHm_Chr5g0076461
rosa_laevigata	RLG00000036621
rosa_multiflora	Rmu_sc0000369.1_g000015 Rmu_sc0019498.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005440
rosa_rugosa	Rorug05G0448200 Rorug05G0448300.1
rosa_samantha	Rh5BG524700 Rh5DG536400
rosa_wichuraiana	Rw5G046650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	420
AclWI	GGATC	4 cut(s)	187, 200, 870, 883
AfaI	GTAC	2 cut(s)	248, 590
AflIII	ACRYGT	1 cut(s)	452
AgsI	TTSAA	2 cut(s)	70, 665
AjnI	CCWGG	1 cut(s)	93
AleI	CACNNNNGTG	1 cut(s)	912
AluBI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 839
AluI	AGCT	6 cut(s)	134, 271, 350, 511, 814, 839
Alw21I	GWGCWC	2 cut(s)	93, 816
Alw26I	GTCTC	2 cut(s)	104, 893
Alw44I	GTGCAC	1 cut(s)	89
AlwI	GGATC	4 cut(s)	187, 200, 870, 883
Ama87I	CYCGRG	1 cut(s)	896
AoxI	GGCC	1 cut(s)	991
ApaLI	GTGCAC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	1007
AsuHPI	GGTGA	1 cut(s)	967
AvaI	CYCGRG	1 cut(s)	896
BaeGI	GKGCMC	1 cut(s)	93
BamHI	GGATCC	2 cut(s)	192, 875
BanII	GRGCYC	4 cut(s)	333, 740, 816, 975
BbsI	GAAGAC	2 cut(s)	296, 563
Bbv12I	GWGCWC	2 cut(s)	93, 816
BbvI	GCAGC	1 cut(s)	994
BccI	CCATC	2 cut(s)	804, 813
BciT130I	CCWGG	1 cut(s)	95
BcoDI	GTCTC	2 cut(s)	104, 893
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	1008
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	1009
Bme1390I	CCNGG	1 cut(s)	95
BmeT110I	CYCGRG	1 cut(s)	896
BmiI	GGNNCC	2 cut(s)	194, 877
BmrFI	CCNGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	716
BpiI	GAAGAC	2 cut(s)	296, 563
Bpu1102I	GCTNAGC	1 cut(s)	332
BpuEI	CTTGAG	1 cut(s)	851
BsaJI	CCNNGG	1 cut(s)	94
Bse1I	ACTGG	1 cut(s)	481
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	95
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	3 cut(s)	378, 707, 796
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	4 cut(s)	281, 346, 504, 933
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	658
BseSI	GKGCMC	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	994
BsgI	GTGCAG	1 cut(s)	936
BshFI	GGCC	1 cut(s)	993
BsiHKAI	GWGCWC	2 cut(s)	93, 816
BsiHKCI	CYCGRG	1 cut(s)	896
BslFI	GGGAC	2 cut(s)	152, 569
BsmAI	GTCTC	2 cut(s)	104, 893
BsmFI	GGGAC	2 cut(s)	152, 569
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	993
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	5 cut(s)	93, 333, 740, 816, 975
Bsp1407I	TGTACA	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	24, 192, 400, 875
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	1 cut(s)	420
BspANI	GGCC	1 cut(s)	993
BspCNI	CTCAG	4 cut(s)	280, 345, 503, 934
BspLI	GGNNCC	2 cut(s)	194, 877
BspPI	GGATC	4 cut(s)	187, 200, 870, 883
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	4 cut(s)	24, 192, 400, 875
Bst2UI	CCWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	179, 520
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstAUI	TGTACA	1 cut(s)	246
BstDEI	CTNAG	6 cut(s)	267, 332, 490, 845, 942, 995
BstF5I	GGATG	3 cut(s)	378, 707, 796
BstKTI	GATC	4 cut(s)	27, 195, 403, 878
BstMAI	GTCTC	2 cut(s)	104, 893
BstMBI	GATC	4 cut(s)	24, 192, 400, 875
BstMWI	GCNNNNNNNGC	2 cut(s)	628, 923
BstNI	CCWGG	1 cut(s)	95
BstNSI	RCATGY	2 cut(s)	456, 606
BstSCI	CCNGG	1 cut(s)	93
BstSLI	GKGCMC	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	994
BstV2I	GAAGAC	2 cut(s)	296, 563
BstX2I	RGATCY	2 cut(s)	192, 875
BstXI	CCANNNNNNTGG	1 cut(s)	956
BstYI	RGATCY	2 cut(s)	192, 875
BsuRI	GGCC	1 cut(s)	993
BtsCI	GGATG	3 cut(s)	378, 707, 796
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	247, 589
CviAII	CATG	4 cut(s)	453, 603, 697, 884
CviQI	GTAC	2 cut(s)	247, 589
DdeI	CTNAG	6 cut(s)	267, 332, 490, 845, 942, 995
DpnI	GATC	4 cut(s)	26, 194, 402, 877
DpnII	GATC	4 cut(s)	24, 192, 400, 875
Ecl136II	GAGCTC	1 cut(s)	814
Eco24I	GRGCYC	4 cut(s)	333, 740, 816, 975
Eco32I	GATATC	1 cut(s)	101
Eco53kI	GAGCTC	1 cut(s)	814
Eco88I	CYCGRG	1 cut(s)	896
EcoICRI	GAGCTC	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	93
EcoRV	GATATC	1 cut(s)	101
EcoT22I	ATGCAT	1 cut(s)	709
EcoT38I	GRGCYC	4 cut(s)	333, 740, 816, 975
FaeI	CATG	4 cut(s)	456, 606, 700, 887
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 828, 860
FaqI	GGGAC	2 cut(s)	152, 569
FatI	CATG	4 cut(s)	452, 602, 696, 883
Fnu4HI	GCNGC	1 cut(s)	1008
FokI	GGATG	3 cut(s)	365, 694, 783
FriOI	GRGCYC	4 cut(s)	333, 740, 816, 975
Fsp4HI	GCNGC	1 cut(s)	1008
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	1008
HaeIII	GGCC	1 cut(s)	993
Hin1II	CATG	4 cut(s)	456, 606, 700, 887
HincII	GTYRAC	1 cut(s)	1003
HindII	GTYRAC	1 cut(s)	1003
HindIII	AAGCTT	2 cut(s)	348, 509
HinfI	GANTC	3 cut(s)	263, 851, 999
HphI	GGTGA	1 cut(s)	967
Hpy166II	GTNNAC	3 cut(s)	91, 182, 1003
Hpy188I	TCNGA	1 cut(s)	760
Hpy188III	TCNNGA	3 cut(s)	104, 551, 809
Hpy8I	GTNNAC	3 cut(s)	91, 182, 1003
HpyAV	CCTTC	6 cut(s)	426, 454, 604, 799, 889, 905
HpyCH4III	ACNGT	2 cut(s)	179, 520
HpyCH4V	TGCA	6 cut(s)	91, 631, 707, 860, 917, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	628, 923
HpyF3I	CTNAG	6 cut(s)	267, 332, 490, 845, 942, 995
Hsp92II	CATG	4 cut(s)	456, 606, 700, 887
Kzo9I	GATC	4 cut(s)	24, 192, 400, 875
Lsp1109I	GCAGC	1 cut(s)	994
LweI	GCATC	1 cut(s)	716
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	287, 684, 981
MalI	GATC	4 cut(s)	26, 194, 402, 877
MboI	GATC	4 cut(s)	24, 192, 400, 875
MboII	GAAGA	5 cut(s)	62, 82, 296, 568, 653
MfeI	CAATTG	1 cut(s)	778
MflI	RGATCY	2 cut(s)	192, 875
MhlI	GDGCHC	5 cut(s)	93, 333, 740, 816, 975
MluCI	AATT	6 cut(s)	204, 228, 358, 778, 820, 889
MlyI	GAGTC	2 cut(s)	860, 1008
MmeI	TCCRAC	2 cut(s)	130, 587
MnlI	CCTC	8 cut(s)	13, 183, 292, 633, 636, 639, 722, 727
Mph1103I	ATGCAT	1 cut(s)	709
MseI	TTAA	6 cut(s)	44, 129, 482, 498, 542, 888
MslI	CAYNNNNRTG	2 cut(s)	383, 912
MspR9I	CCNGG	1 cut(s)	95
MunI	CAATTG	1 cut(s)	778
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	2 cut(s)	628, 923
NdeII	GATC	4 cut(s)	24, 192, 400, 875
NlaIII	CATG	4 cut(s)	456, 606, 700, 887
NlaIV	GGNNCC	2 cut(s)	194, 877
NmeAIII	GCCGAG	1 cut(s)	730
NmuCI	GTSAC	1 cut(s)	981
NsiI	ATGCAT	1 cut(s)	709
NspI	RCATGY	2 cut(s)	456, 606
OliI	CACNNNNGTG	1 cut(s)	912
PciI	ACATGT	1 cut(s)	452
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	1009
PleI	GAGTC	2 cut(s)	859, 1007
PpsI	GAGTC	2 cut(s)	859, 1007
PscI	ACATGT	1 cut(s)	452
Psp124BI	GAGCTC	1 cut(s)	816
Psp6I	CCWGG	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	93
PspN4I	GGNNCC	2 cut(s)	194, 877
PsuI	RGATCY	2 cut(s)	192, 875
RsaI	GTAC	2 cut(s)	248, 590
RsaNI	GTAC	2 cut(s)	247, 589
RseI	CAYNNNNRTG	2 cut(s)	383, 912
SacI	GAGCTC	1 cut(s)	816
SaqAI	TTAA	6 cut(s)	44, 129, 482, 498, 542, 888
SatI	GCNGC	1 cut(s)	1008
Sau3AI	GATC	4 cut(s)	24, 192, 400, 875
SchI	GAGTC	2 cut(s)	860, 1008
ScrFI	CCNGG	1 cut(s)	95
SduI	GDGCHC	5 cut(s)	93, 333, 740, 816, 975
SfaNI	GCATC	1 cut(s)	716
SmiMI	CAYNNNNRTG	2 cut(s)	383, 912
SmlI	CTYRAG	1 cut(s)	866
SmoI	CTYRAG	1 cut(s)	866
Sse9I	AATT	6 cut(s)	204, 228, 358, 778, 820, 889
SsiI	CCGC	1 cut(s)	420
SspMI	CTAG	1 cut(s)	135
SstI	GAGCTC	1 cut(s)	816
StyD4I	CCNGG	1 cut(s)	93
TaaI	ACNGT	2 cut(s)	179, 520
TaqI	TCGA	1 cut(s)	792
TasI	AATT	6 cut(s)	204, 228, 358, 778, 820, 889
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	6 cut(s)	44, 129, 482, 498, 542, 888
Tru9I	TTAA	6 cut(s)	44, 129, 482, 498, 542, 888
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	981
TseI	GCWGC	1 cut(s)	1007
Tsp45I	GTSAC	1 cut(s)	981
TspDTI	ATGAA	2 cut(s)	401, 405
TspRI	CASTG	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	89
XceI	RCATGY	2 cut(s)	456, 606
XspI	CTAG	1 cut(s)	135
Zsp2I	ATGCAT	1 cut(s)	709

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.