Rmu_sc0000369.1_g000015

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000369.1
OG0009845
Physical Location & Seq
Reverse (-)
66618 .. 69356
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000369.1_g000015.1.cds

Sequence Viewer

Length: 480 bp
atgtttaaatatctgcaaagggaaccgacagaagacaagatgggtgttcctgatccagaagcgatcaagcagtttcagttgttaatggaagaagttgatgaaccgctgaagaagacatttgagaatgtgcaccaagggtatccaaatgagacatttgtgcggtttcttaaagcgagggactggaatgttggcaaagcccacaaaatgttggttgactgtttgcaatggaggatagacagcgaaattgacaatatattggcgaaaccaatcatccctactgatttgtacagagcagtgcgagattctcagcttttgggattgtctggttactcaaaagagggtcttcctgtcattgctattggtgttgggctcagcacatatgacaaagcttctgtaaattactatgttcagtcgcacatccaaatgaatgaataccgagatcgtgtagttttacctgctgcaacaaataagtatccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

159

Amino Acids

18.35

Weight (kDa)

5.93

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 463
AciI CCGC 2 cut(s) 104, 160
AclWI GGATC 1 cut(s) 47
AcuI CTGAAG 1 cut(s) 128
AfaI GTAC 1 cut(s) 287
AluBI AGCT 2 cut(s) 310, 389
AluI AGCT 2 cut(s) 310, 389
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 1 cut(s) 143
Alw44I GTGCAC 1 cut(s) 128
AlwI GGATC 1 cut(s) 47
ApaLI GTGCAC 1 cut(s) 128
ApeKI GCWGC 1 cut(s) 458
BaeGI GKGCMC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 372
BbsI GAAGAC 3 cut(s) 39, 119, 335
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 445
BccI CCATC 1 cut(s) 34
BciVI GTATCC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 143
BfuAI ACCTGC 1 cut(s) 463
BfuI GTATCC 1 cut(s) 150
BisI GCNGC 1 cut(s) 459
BlpI GCTNAGC 1 cut(s) 371
BlsI GCNGC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 24
BpiI GAAGAC 3 cut(s) 39, 119, 335
Bpu1102I GCTNAGC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 133
Bse1I ACTGG 1 cut(s) 185
Bse3DI GCAATG 2 cut(s) 230, 351
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 2 cut(s) 270, 417
BseMI GCAATG 2 cut(s) 230, 351
BseMII CTCAG 2 cut(s) 320, 385
BseNI ACTGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 445
BsiHKAI GWGCWC 1 cut(s) 132
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 191
Bsp1286I GDGCHC 2 cut(s) 132, 372
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 52, 63, 439
Bsp1720I GCTNAGC 1 cut(s) 371
BspACI CCGC 2 cut(s) 104, 160
BspCNI CTCAG 2 cut(s) 319, 384
BspLI GGNNCC 1 cut(s) 24
BspMI ACCTGC 1 cut(s) 463
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 2 cut(s) 230, 351
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 185
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 3 cut(s) 52, 63, 439
BssT1I CCWWGG 1 cut(s) 133
Bst4CI ACNGT 1 cut(s) 218
BstAUI TGTACA 1 cut(s) 285
BstDEI CTNAG 2 cut(s) 306, 371
BstF5I GGATG 2 cut(s) 270, 417
BstKTI GATC 3 cut(s) 55, 66, 442
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 3 cut(s) 52, 63, 439
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 445
BstV2I GAAGAC 3 cut(s) 39, 119, 335
BsuI GTATCC 1 cut(s) 150
BtsCI GGATG 2 cut(s) 270, 417
BtsI GCAGTG 1 cut(s) 300
BtsIMutI CAGTG 1 cut(s) 300
BveI ACCTGC 1 cut(s) 463
Csp6I GTAC 1 cut(s) 286
CviJI RGCY 4 cut(s) 197, 310, 370, 389
CviKI_1 RGCY 4 cut(s) 197, 310, 370, 389
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 2 cut(s) 306, 371
DpnI GATC 3 cut(s) 54, 65, 441
DpnII GATC 3 cut(s) 52, 63, 439
DraI TTTAAA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 372
Eco57I CTGAAG 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 133
FaiI YATR 4 cut(s) 254, 379, 381, 405
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 191
FauNDI CATATG 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 459
FokI GGATG 2 cut(s) 257, 404
FriOI GRGCYC 1 cut(s) 372
Fsp4HI GCNGC 1 cut(s) 459
GluI GCNGC 1 cut(s) 459
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 130, 214
Hpy188III TCNNGA 2 cut(s) 50, 56
Hpy8I GTNNAC 2 cut(s) 130, 214
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 4 cut(s) 16, 130, 223, 461
HpyF3I CTNAG 2 cut(s) 306, 371
Kzo9I GATC 3 cut(s) 52, 63, 439
LpnPI CCDG 6 cut(s) 63, 69, 166, 309, 360, 468
Lsp1109I GCAGC 1 cut(s) 445
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 54, 65, 441
MboI GATC 3 cut(s) 52, 63, 439
MboII GAAGA 5 cut(s) 44, 101, 121, 124, 335
MhlI GDGCHC 2 cut(s) 132, 372
MluCI AATT 2 cut(s) 243, 397
MnlI CCTC 3 cut(s) 168, 222, 331
MseI TTAA 3 cut(s) 6, 83, 168
MslI CAYNNNNRTG 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 106
NdeI CATATG 1 cut(s) 379
NdeII GATC 3 cut(s) 52, 63, 439
NlaIV GGNNCC 1 cut(s) 24
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 1 cut(s) 460
PspN4I GGNNCC 1 cut(s) 24
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 422
SaqAI TTAA 3 cut(s) 6, 83, 168
SatI GCNGC 1 cut(s) 459
Sau3AI GATC 3 cut(s) 52, 63, 439
SduI GDGCHC 2 cut(s) 132, 372
SetI ASST 3 cut(s) 312, 391, 457
SmiMI CAYNNNNRTG 1 cut(s) 422
Sse9I AATT 2 cut(s) 243, 397
SsiI CCGC 2 cut(s) 104, 160
StyI CCWWGG 1 cut(s) 133
TaaI ACNGT 1 cut(s) 218
TasI AATT 2 cut(s) 243, 397
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 6, 83, 168
Tru9I TTAA 3 cut(s) 6, 83, 168
TscAI CASTG 1 cut(s) 300
TseI GCWGC 1 cut(s) 458
TspDTI ATGAA 3 cut(s) 114, 440, 444
TspRI CASTG 1 cut(s) 300
VneI GTGCAC 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.